CV712620

Overview
NameCV712620
Unique NameCV712620
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length870
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712620 vs. ExPASy Swiss-Prot
Match: COX3_PROWI (Cytochrome c oxidase subunit 3 OS=Prototheca wickerhamii GN=COX3 PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.400e-43
Identity = 78/116 (67.24%), Postives = 88/116 (75.86%), Query Frame = -2
Query:  513 WAHHAILAGKEKRXXXXXXXXXXXXXVFTGFQGMEYYQAPFTISDSIYGSTFYLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWGG 860
            WAHHAILAG  K+             +FTGFQ +EY +APFTISD IYGSTFYLATGFHGFHVIIGT+F+ +C  R  L H +K HH+GFEAAAWYWH VDVVWLFLFV IY+WGG
Sbjct:  146 WAHHAILAGNRKQGIISLAITVLLAVIFTGFQALEYLEAPFTISDGIYGSTFYLATGFHGFHVIIGTIFIAVCLFRLVLHHFSKSHHLGFEAAAWYWHMVDVVWLFLFVCIYYWGG 261          
BLAST of CV712620 vs. ExPASy Swiss-Prot
Match: COX3_SALSA (Cytochrome c oxidase subunit 3 OS=Salmo salar GN=mt-co3 PE=3 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 7.722e-42
Identity = 74/115 (64.35%), Postives = 86/115 (74.78%), Query Frame = -2
Query:  516 WAHHAILAGKEKRXXXXXXXXXXXXXVFTGFQGMEYYQAPFTISDSIYGSTFYLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWG 860
            WAHH+I+ G+ K+              FT  QGMEYY+APFTI+D +YGSTF++ATGFHG HVIIG+ FL IC +RQ   H T EHH GFEAAAWYWHFVDVVWLFL+VSIYWWG
Sbjct:  146 WAHHSIMEGERKQTIQALTLTILLGFYFTFLQGMEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSTFLAICLLRQIQYHFTSEHHFGFEAAAWYWHFVDVVWLFLYVSIYWWG 260          
BLAST of CV712620 vs. ExPASy Swiss-Prot
Match: COX3_ONCNE (Cytochrome c oxidase subunit 3 OS=Oncorhynchus nerka GN=mt-co3 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.008e-41
Identity = 73/115 (63.48%), Postives = 86/115 (74.78%), Query Frame = -2
Query:  516 WAHHAILAGKEKRXXXXXXXXXXXXXVFTGFQGMEYYQAPFTISDSIYGSTFYLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWG 860
            WAHH+I+ G+ K+              FT  QGMEYY+APFTI+D +YGSTF++ATGFHG HVIIG+ FL +C +RQ   H T EHH GFEAAAWYWHFVDVVWLFL+VSIYWWG
Sbjct:  146 WAHHSIMEGERKQTIQALTLTILLGFYFTFLQGMEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRQVQYHFTSEHHFGFEAAAWYWHFVDVVWLFLYVSIYWWG 260          
BLAST of CV712620 vs. ExPASy Swiss-Prot
Match: COX3_ONCMY (Cytochrome c oxidase subunit 3 OS=Oncorhynchus mykiss GN=mt-co3 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.008e-41
Identity = 73/115 (63.48%), Postives = 86/115 (74.78%), Query Frame = -2
Query:  516 WAHHAILAGKEKRXXXXXXXXXXXXXVFTGFQGMEYYQAPFTISDSIYGSTFYLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWG 860
            WAHH+I+ G+ K+              FT  QGMEYY+APFTI+D +YGSTF++ATGFHG HVIIG+ FL +C +RQ   H T EHH GFEAAAWYWHFVDVVWLFL+VSIYWWG
Sbjct:  146 WAHHSIMEGERKQTIQALTLTILLGFYFTFLQGMEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRQVQYHFTSEHHFGFEAAAWYWHFVDVVWLFLYVSIYWWG 260          
BLAST of CV712620 vs. ExPASy Swiss-Prot
Match: COX3_ONCMA (Cytochrome c oxidase subunit 3 OS=Oncorhynchus masou GN=mt-co3 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.008e-41
Identity = 73/115 (63.48%), Postives = 86/115 (74.78%), Query Frame = -2
Query:  516 WAHHAILAGKEKRXXXXXXXXXXXXXVFTGFQGMEYYQAPFTISDSIYGSTFYLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWG 860
            WAHH+I+ G+ K+              FT  QGMEYY+APFTI+D +YGSTF++ATGFHG HVIIG+ FL +C +RQ   H T EHH GFEAAAWYWHFVDVVWLFL+VSIYWWG
Sbjct:  146 WAHHSIMEGERKQTIQALTLTILLGFYFTFLQGMEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRQVQYHFTSEHHFGFEAAAWYWHFVDVVWLFLYVSIYWWG 260          
BLAST of CV712620 vs. ExPASy Swiss-Prot
Match: COX3_ONCCL (Cytochrome c oxidase subunit 3 OS=Oncorhynchus clarki GN=mt-co3 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.008e-41
Identity = 73/115 (63.48%), Postives = 86/115 (74.78%), Query Frame = -2
Query:  516 WAHHAILAGKEKRXXXXXXXXXXXXXVFTGFQGMEYYQAPFTISDSIYGSTFYLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWG 860
            WAHH+I+ G+ K+              FT  QGMEYY+APFTI+D +YGSTF++ATGFHG HVIIG+ FL +C +RQ   H T EHH GFEAAAWYWHFVDVVWLFL+VSIYWWG
Sbjct:  146 WAHHSIMEGERKQTIQALTLTILLGFYFTFLQGMEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRQVQYHFTSEHHFGFEAAAWYWHFVDVVWLFLYVSIYWWG 260          
BLAST of CV712620 vs. ExPASy Swiss-Prot
Match: COX3_DANRE (Cytochrome c oxidase subunit 3 OS=Danio rerio GN=mt-co3 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.720e-41
Identity = 71/115 (61.74%), Postives = 86/115 (74.78%), Query Frame = -2
Query:  516 WAHHAILAGKEKRXXXXXXXXXXXXXVFTGFQGMEYYQAPFTISDSIYGSTFYLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWG 860
            WAHH+++ G+ K+              FT  Q MEYY+APFTI+D +YGSTF++ATGFHG HVIIG+ FL +C +RQ L H T +HH GFEAAAWYWHFVDVVWLFL+VSIYWWG
Sbjct:  146 WAHHSLMEGERKQAIQSLALTILLGLYFTALQAMEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRQVLFHFTSDHHFGFEAAAWYWHFVDVVWLFLYVSIYWWG 260          
BLAST of CV712620 vs. ExPASy Swiss-Prot
Match: COX3_CYPCA (Cytochrome c oxidase subunit 3 OS=Cyprinus carpio GN=mt-co3 PE=2 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 2.247e-41
Identity = 72/115 (62.61%), Postives = 85/115 (73.91%), Query Frame = -2
Query:  516 WAHHAILAGKEKRXXXXXXXXXXXXXVFTGFQGMEYYQAPFTISDSIYGSTFYLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWG 860
            WAHH+I+ G+ K+              FT  Q MEYY+APFTI+D +YGSTF++ATGFHG HVIIG+ FL +C +RQ   H T EHH GFEAAAWYWHFVDVVWLFL+VSIYWWG
Sbjct:  146 WAHHSIMEGERKQAIQSLALTILLGLYFTALQAMEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRQIQYHFTSEHHFGFEAAAWYWHFVDVVWLFLYVSIYWWG 260          
BLAST of CV712620 vs. ExPASy Swiss-Prot
Match: COX3_CARAU (Cytochrome c oxidase subunit 3 OS=Carassius auratus GN=mt-co3 PE=2 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 2.247e-41
Identity = 72/115 (62.61%), Postives = 85/115 (73.91%), Query Frame = -2
Query:  516 WAHHAILAGKEKRXXXXXXXXXXXXXVFTGFQGMEYYQAPFTISDSIYGSTFYLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWG 860
            WAHH+I+ G+ K+              FT  Q MEYY+APFTI+D +YGSTF++ATGFHG HVIIG+ FL +C +RQ   H T EHH GFEAAAWYWHFVDVVWLFL+VSIYWWG
Sbjct:  146 WAHHSIMEGERKQAIQSLALTILLGFYFTALQAMEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRQIQYHFTSEHHFGFEAAAWYWHFVDVVWLFLYVSIYWWG 260          
BLAST of CV712620 vs. ExPASy Swiss-Prot
Match: COX3_SCYCA (Cytochrome c oxidase subunit 3 OS=Scyliorhinus canicula GN=MT-CO3 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.832e-41
Identity = 71/115 (61.74%), Postives = 83/115 (72.17%), Query Frame = -2
Query:  516 WAHHAILAGKEKRXXXXXXXXXXXXXVFTGFQGMEYYQAPFTISDSIYGSTFYLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWG 860
            WAHH ++ G  K               FT  Q MEYY+APFTI+D +YG+TF++ATGFHG HVIIG+ FL +C +RQ L H T EHH GFEAAAWYWHFVDVVWLFL+VSIYWWG
Sbjct:  146 WAHHGLMEGNRKEAIQALTLTIILGVYFTALQAMEYYEAPFTIADGVYGTTFFVATGFHGLHVIIGSTFLAVCLLRQVLYHFTSEHHFGFEAAAWYWHFVDVVWLFLYVSIYWWG 260          
The following BLAST results are available for this feature:
BLAST of CV712620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
COX3_PROWI2.400e-4367.24Cytochrome c oxidase subunit 3 OS=Prototheca wicke... [more]
COX3_SALSA7.722e-4264.35Cytochrome c oxidase subunit 3 OS=Salmo salar GN=m... [more]
COX3_ONCNE1.008e-4163.48Cytochrome c oxidase subunit 3 OS=Oncorhynchus ner... [more]
COX3_ONCMY1.008e-4163.48Cytochrome c oxidase subunit 3 OS=Oncorhynchus myk... [more]
COX3_ONCMA1.008e-4163.48Cytochrome c oxidase subunit 3 OS=Oncorhynchus mas... [more]
COX3_ONCCL1.008e-4163.48Cytochrome c oxidase subunit 3 OS=Oncorhynchus cla... [more]
COX3_DANRE1.720e-4161.74Cytochrome c oxidase subunit 3 OS=Danio rerio GN=m... [more]
COX3_CYPCA2.247e-4162.61Cytochrome c oxidase subunit 3 OS=Cyprinus carpio ... [more]
COX3_CARAU2.247e-4162.61Cytochrome c oxidase subunit 3 OS=Carassius auratu... [more]
COX3_SCYCA3.832e-4161.74Cytochrome c oxidase subunit 3 OS=Scyliorhinus can... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001K13_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001K13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712620 ID=CV712620; Name=CV712620; organism=Citrus sinensis; type=EST; length=870bp
TTCTAACTGAAGCTGCTCACGTTTTTAAGCAGGGTTAACTACTGGTCTTG
GAAAGCCAGGCAGCTCAGGCAGTTCGGCTTGAAGACAAGACTCGTTCCGT
TCCGTACTTGACTTAGGAGCTAGTTTAGTTTTAGTACTCGCCCCTATCTC
TAAAGGCCGATATCTTTCGTAGCAGCCAAGGATGAGTTCAGTTCGATCCA
TTAGGTTCTTCGATTTGTTCAGAAAAGAAACGAGAGACAAGAAAACATCT
TTGATTACGATTAAAAGGAACAATCTCAAATAGATCAAGATCCAATTTCG
AGTCATTTCTTGGTGAACATAATCTGCCATAATCTCTTCGATCCCTTCAT
TGATGTGCCAGAATAAAGAGAGATTTAGTAGGAAAGTGGAAGAGACTTTT
TTGTATATGATAATCAAAGGGAGTAGTAAAGCTGCAGTAATTCTTTGGAA
AAGCCCGATTCTCTTTGTCTTCGAGCTTTCATTCCTCAATCCACTCTTTC
CTTCCTTCATATACCTCCCCACCAATAGATAGAGACAAATAGGAATAACC
AAACCACGTCTACAAAATGCCAGTACCATGCAGCTGCTTCAAAGCCAACG
TGATGCTCCTTGGTCAGATGACCAAGATATTGGCGAATACCACATATGAT
CAAAAAAAGAGTACCTATAATCACATGAAAACCATGAAAGCCAGTTGCTA
AGTAAAAGGTAGAACCATAAATACTATCCGAAATAGTGAAGGGTGCTTGA
TAATATTCCATTCCTTGAAAGCCGGTGAATACTAGAGCCAGTAAAACGGT
AGCTACTAGAGCATAAACTGCTCGTTTTTCCTTCCCCGCGAGTATAGCAT
GATGAGCCCAGTTACGGCAG
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