CV712620

Overview
NameCV712620
Unique NameCV712620
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length870
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712620 vs. ExPASy Swiss-Prot
Match: COX3_STRCO (Probable cytochrome c oxidase subunit 3 OS=Streptomyces coelicolor GN=ctaE PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.088e-11
Identity = 38/90 (42.22%), Postives = 48/90 (53.33%), Query Frame = -2
Query:  525 FTGFQGMEYYQAP----FTISDSIYGSTFYLATGFHGFHVIIGTL-FLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIY 779
            F G Q  EY +       ++S   YGS FYL TGFHG HV  G + FL++ G        T E        ++YWHFVDVVW+ LF +IY
Sbjct:  114 FIGGQVFEYTELVKHEGISLSSDPYGSAFYLTTGFHGLHVTGGLIAFLLVLGRTYAARRFTHEQATAAIVVSYYWHFVDVVWIGLFATIY 203          
BLAST of CV712620 vs. ExPASy Swiss-Prot
Match: COX3_STRAW (Probable cytochrome c oxidase subunit 3 OS=Streptomyces avermitilis GN=ctaE PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.088e-11
Identity = 38/90 (42.22%), Postives = 48/90 (53.33%), Query Frame = -2
Query:  525 FTGFQGMEYYQAP----FTISDSIYGSTFYLATGFHGFHVIIGTL-FLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIY 779
            F G Q  EY +       ++S   YGS FYL TGFHG HV  G + FL++ G        T E        ++YWHFVDVVW+ LF +IY
Sbjct:  114 FIGGQVFEYTELVKKDGLSLSSDPYGSVFYLTTGFHGLHVTGGLIAFLLVLGRTYAARRFTHEQATAAIVVSYYWHFVDVVWIGLFATIY 203          
BLAST of CV712620 vs. ExPASy Swiss-Prot
Match: COX3_MYCTU (Probable cytochrome c oxidase subunit 3 OS=Mycobacterium tuberculosis GN=ctaE PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.420e-11
Identity = 32/72 (44.44%), Postives = 41/72 (56.94%), Query Frame = -2
Query:  522 TISDSIYGSTFYLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYW 737
            +I  S YGS FYLATGFHG HV  G +  I   +R  +   T          ++YWHFVD+VW+ LF  IY+
Sbjct:  130 SIPSSAYGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIVVSYYWHFVDIVWIALFTVIYF 201          
BLAST of CV712620 vs. ExPASy Swiss-Prot
Match: COX3_MYCBO (Probable cytochrome c oxidase subunit 3 OS=Mycobacterium bovis GN=ctaE PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.420e-11
Identity = 32/72 (44.44%), Postives = 41/72 (56.94%), Query Frame = -2
Query:  522 TISDSIYGSTFYLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYW 737
            +I  S YGS FYLATGFHG HV  G +  I   +R  +   T          ++YWHFVD+VW+ LF  IY+
Sbjct:  130 SIPSSAYGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIVVSYYWHFVDIVWIALFTVIYF 201          
BLAST of CV712620 vs. ExPASy Swiss-Prot
Match: COX13_THET8 (Cytochrome c oxidase polypeptide I+III OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=caaA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.397e-11
Identity = 36/117 (30.77%), Postives = 56/117 (47.86%), Query Frame = -2
Query:  519 NWAHHAILAGKEKRXXXXXXXXXXXXXVFTGFQGMEYYQAPFTIS--DSIYGSTFYLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWW 863
            ++AHH +  G+                +F   Q  E+YQ     S  ++++ + F+   G HG HV+IG   LI+  ++   G +T  +H   EAA+ YWH VD VWL +    Y W
Sbjct:  675 HFAHHDLRRGRFNPFRFGLLVTIILGVLFFLVQSWEFYQFYHHSSWQENLWTAAFFTIVGLHGLHVVIGGFGLILAYLQALRGKITLHNHGTLEAASMYWHLVDAVWLVIVTIFYVW 791          
BLAST of CV712620 vs. ExPASy Swiss-Prot
Match: COX3_BACSU (Cytochrome c oxidase subunit 3 OS=Bacillus subtilis GN=ctaE PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.049e-11
Identity = 36/93 (38.71%), Postives = 47/93 (50.54%), Query Frame = -2
Query:  516 GFQGMEYYQAP-------FTISDSIYGSTFYLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWG 773
            GF G+E Y+         FTI+ S  GS FY   G HG HV  G +++    IR     L       F  A+ YWHF+DVVW+F+F  +Y  G
Sbjct:  112 GFLGLEIYEFKHYTHEFGFTITSSALGSAFYTLVGTHGAHVAFGLMWISTLMIRNAKRGLNLYTAPKFYVASLYWHFIDVVWVFIFTVVYLMG 204          
The following BLAST results are available for this feature:
BLAST of CV712620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
COX3_STRCO1.088e-1142.22Probable cytochrome c oxidase subunit 3 OS=Strepto... [more]
COX3_STRAW1.088e-1142.22Probable cytochrome c oxidase subunit 3 OS=Strepto... [more]
COX3_MYCTU1.420e-1144.44Probable cytochrome c oxidase subunit 3 OS=Mycobac... [more]
COX3_MYCBO1.420e-1144.44Probable cytochrome c oxidase subunit 3 OS=Mycobac... [more]
COX13_THET85.397e-1130.77Cytochrome c oxidase polypeptide I+III OS=Thermus ... [more]
COX3_BACSU7.049e-1138.71Cytochrome c oxidase subunit 3 OS=Bacillus subtili... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001K13_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001K13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712620 ID=CV712620; Name=CV712620; organism=Citrus sinensis; type=EST; length=870bp
TTCTAACTGAAGCTGCTCACGTTTTTAAGCAGGGTTAACTACTGGTCTTG
GAAAGCCAGGCAGCTCAGGCAGTTCGGCTTGAAGACAAGACTCGTTCCGT
TCCGTACTTGACTTAGGAGCTAGTTTAGTTTTAGTACTCGCCCCTATCTC
TAAAGGCCGATATCTTTCGTAGCAGCCAAGGATGAGTTCAGTTCGATCCA
TTAGGTTCTTCGATTTGTTCAGAAAAGAAACGAGAGACAAGAAAACATCT
TTGATTACGATTAAAAGGAACAATCTCAAATAGATCAAGATCCAATTTCG
AGTCATTTCTTGGTGAACATAATCTGCCATAATCTCTTCGATCCCTTCAT
TGATGTGCCAGAATAAAGAGAGATTTAGTAGGAAAGTGGAAGAGACTTTT
TTGTATATGATAATCAAAGGGAGTAGTAAAGCTGCAGTAATTCTTTGGAA
AAGCCCGATTCTCTTTGTCTTCGAGCTTTCATTCCTCAATCCACTCTTTC
CTTCCTTCATATACCTCCCCACCAATAGATAGAGACAAATAGGAATAACC
AAACCACGTCTACAAAATGCCAGTACCATGCAGCTGCTTCAAAGCCAACG
TGATGCTCCTTGGTCAGATGACCAAGATATTGGCGAATACCACATATGAT
CAAAAAAAGAGTACCTATAATCACATGAAAACCATGAAAGCCAGTTGCTA
AGTAAAAGGTAGAACCATAAATACTATCCGAAATAGTGAAGGGTGCTTGA
TAATATTCCATTCCTTGAAAGCCGGTGAATACTAGAGCCAGTAAAACGGT
AGCTACTAGAGCATAAACTGCTCGTTTTTCCTTCCCCGCGAGTATAGCAT
GATGAGCCCAGTTACGGCAG
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