CV712620

Overview
NameCV712620
Unique NameCV712620
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length870
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV712620 vs. ExPASy Swiss-Prot
Match: COX3_ORNAN (Cytochrome c oxidase subunit 3 OS=Ornithorhynchus anatinus GN=MT-CO3 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.832e-41
Identity = 73/115 (63.48%), Postives = 83/115 (72.17%), Query Frame = -2 
Query:  516 WAHHAILAGKEKRXXXXXXXXXXXXXVFTGFQGMEYYQAPFTISDSIYGSTFYLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWG 860
            WAHH+++ G  K+              FT  Q MEYY+A FTISD +YGSTF++ATGFHG HVIIGT FLI C +RQ L H T  HH GFEAAAWYWHFVDVVWLFL+VSIYWWG
Sbjct:  146 WAHHSLMEGNRKQMLQALTITIALGLYFTALQAMEYYEASFTISDGVYGSTFFVATGFHGLHVIIGTTFLITCLVRQTLYHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWG 260
[Close]
BLAST of CV712620 vs. ExPASy Swiss-Prot
Match: COX3_TETNG (Cytochrome c oxidase subunit 3 OS=Tetraodon nigroviridis GN=mt-co3 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 5.005e-41
Identity = 72/115 (62.61%), Postives = 85/115 (73.91%), Query Frame = -2 
Query:  516 WAHHAILAGKEKRXXXXXXXXXXXXXVFTGFQGMEYYQAPFTISDSIYGSTFYLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWG 860
            WAHH+I+ G+ K+              FT  Q MEYY+APFTI+D +YGSTF++ATGFHG HVIIG+ FL IC +RQ   H T EHH GFEAAAWYWHFVDVVWLFL++SIYWWG
Sbjct:  146 WAHHSIMEGERKQAIHSLTLTILLGFYFTFLQAMEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSTFLAICLLRQIRYHFTSEHHFGFEAAAWYWHFVDVVWLFLYISIYWWG 260
[Close]
BLAST of CV712620 vs. ExPASy Swiss-Prot
Match: COX3_PYLLI (Cytochrome c oxidase subunit 3 OS=Pylaiella littoralis GN=COX3 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 5.005e-41
Identity = 73/115 (63.48%), Postives = 83/115 (72.17%), Query Frame = -2 
Query:  516 WAHHAILAGKEKRXXXXXXXXXXXXXVFTGFQGMEYYQAPFTISDSIYGSTFYLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWG 860
            WAHHAI+ G +K               FT  QG EY  APF +SD +YGS FY+ATGFHGFHVIIGT+FL IC IR YL H + +HH GFEAAAWYWHFVDVVWLFLF++IYWWG
Sbjct:  153 WAHHAIVGGLKKEAMQGLSVTLAFAIAFTAMQGFEYSGAPFGMSDGVYGSVFYMATGFHGFHVIIGTIFLFICTIRLYLSHFSCQHHFGFEAAAWYWHFVDVVWLFLFLTIYWWG 267
[Close]
BLAST of CV712620 vs. ExPASy Swiss-Prot
Match: COX3_GADMO (Cytochrome c oxidase subunit 3 OS=Gadus morhua GN=mt-co3 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 5.005e-41
Identity = 71/115 (61.74%), Postives = 85/115 (73.91%), Query Frame = -2 
Query:  516 WAHHAILAGKEKRXXXXXXXXXXXXXVFTGFQGMEYYQAPFTISDSIYGSTFYLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWG 860
            WAHH+I+ G+ K+              FT  QG+EYY APFTI+D +YGSTF++ATGFHG HVIIG+ FL +C +RQ   H T EHH GFEAAAWYWHFVDVVWLFL++SIYWWG
Sbjct:  146 WAHHSIMEGERKQAIHSLTLTILLGFYFTFLQGLEYYDAPFTIADGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRQIRYHFTSEHHFGFEAAAWYWHFVDVVWLFLYISIYWWG 260
[Close]
BLAST of CV712620 vs. ExPASy Swiss-Prot
Match: COX3_CROLA (Cytochrome c oxidase subunit 3 OS=Crossostoma lacustre GN=mt-co3 PE=3 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 8.537e-41
Identity = 71/115 (61.74%), Postives = 84/115 (73.04%), Query Frame = -2 
Query:  516 WAHHAILAGKEKRXXXXXXXXXXXXXVFTGFQGMEYYQAPFTISDSIYGSTFYLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWG 860
            WAHH+++ G  K+              FT  Q MEYY+APFTI+D +YGSTF++ATGFHG HVIIG+ FL +C +RQ   H T EHH GFEAAAWYWHFVDVVWLFL+VSIYWWG
Sbjct:  146 WAHHSLMEGARKQAIQALALTIILGVYFTALQAMEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSSFLAVCLLRQIQYHFTSEHHFGFEAAAWYWHFVDVVWLFLYVSIYWWG 260
[Close]
BLAST of CV712620 vs. ExPASy Swiss-Prot
Match: COX3_SQUAC (Cytochrome c oxidase subunit 3 OS=Squalus acanthias GN=MT-CO3 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.456e-40
Identity = 70/115 (60.87%), Postives = 83/115 (72.17%), Query Frame = -2 
Query:  516 WAHHAILAGKEKRXXXXXXXXXXXXXVFTGFQGMEYYQAPFTISDSIYGSTFYLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWG 860
            WAHH+++ G  K               FT  Q MEYY+APFTI+D +YGSTF++ATGFHG HVIIG+ FL++C +RQ   H T EHH GFE AAWYWHFVDVVWLFL+VSIYWWG
Sbjct:  146 WAHHSLMEGNRKEAIQALTLTVLLGFYFTALQAMEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSTFLMVCLLRQIQYHFTSEHHFGFERAAWYWHFVDVVWLFLYVSIYWWG 260
[Close]
BLAST of CV712620 vs. ExPASy Swiss-Prot
Match: COX3_TACAC (Cytochrome c oxidase subunit 3 OS=Tachyglossus aculeatus aculeatus GN=MT-CO3 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.902e-40
Identity = 71/115 (61.74%), Postives = 83/115 (72.17%), Query Frame = -2 
Query:  516 WAHHAILAGKEKRXXXXXXXXXXXXXVFTGFQGMEYYQAPFTISDSIYGSTFYLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWG 860
            W+HH+++ G  K+              FT  Q MEYY++ FTISD +YGSTF++ATGFHG HVIIGT FLI C +RQ L H T  HH GFEAAAWYWHFVDVVWLFL+VSIYWWG
Sbjct:  146 WSHHSLMEGNRKQMIQALMITIALGLYFTALQAMEYYESSFTISDGVYGSTFFVATGFHGLHVIIGTTFLITCLLRQLLYHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWG 260
[Close]
BLAST of CV712620 vs. ExPASy Swiss-Prot
Match: COX3_CERSI (Cytochrome c oxidase subunit 3 OS=Ceratotherium simum GN=MT-CO3 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.484e-40
Identity = 72/115 (62.61%), Postives = 82/115 (71.30%), Query Frame = -2 
Query:  516 WAHHAILAGKEKRXXXXXXXXXXXXXVFTGFQGMEYYQAPFTISDSIYGSTFYLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWG 860
            WAHH+++ G  K               FT  Q  EYY+APFTISD IYGSTF++ATGFHG HVIIG+ FLI+C +RQ   H T  HH GFEAAAWYWHFVDVVWLFL+VSIYWWG
Sbjct:  146 WAHHSLMEGNRKHMLQALFITISLGVYFTLLQASEYYEAPFTISDGIYGSTFFVATGFHGLHVIIGSTFLIVCFLRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWG 260
[Close]
BLAST of CV712620 vs. ExPASy Swiss-Prot
Match: COX3_RHIUN (Cytochrome c oxidase subunit 3 OS=Rhinoceros unicornis GN=MT-CO3 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.244e-40
Identity = 71/115 (61.74%), Postives = 82/115 (71.30%), Query Frame = -2 
Query:  516 WAHHAILAGKEKRXXXXXXXXXXXXXVFTGFQGMEYYQAPFTISDSIYGSTFYLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWG 860
            WAHH+++ G  K               FT  Q  EYY+APFTISD +YGSTF++ATGFHG HVIIG+ FLI+C +RQ   H T  HH GFEAAAWYWHFVDVVWLFL+VSIYWWG
Sbjct:  146 WAHHSLMEGNRKHMLQALFITISLGIYFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFLRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWG 260
[Close]
BLAST of CV712620 vs. ExPASy Swiss-Prot
Match: COX3_PHOVI (Cytochrome c oxidase subunit 3 OS=Phoca vitulina GN=MT-CO3 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.237e-40
Identity = 71/115 (61.74%), Postives = 81/115 (70.43%), Query Frame = -2 
Query:  516 WAHHAILAGKEKRXXXXXXXXXXXXXVFTGFQGMEYYQAPFTISDSIYGSTFYLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWG 860
            WAHH+++ G  K               FT  Q  EYY+ PFTISD IYGSTF++ATGFHG HVIIG+ FLI+C +RQ   H T  HH GFEAAAWYWHFVDVVWLFL+VSIYWWG
Sbjct:  146 WAHHSLMEGNRKHMLQALFITISLGIYFTLLQASEYYETPFTISDGIYGSTFFMATGFHGLHVIIGSTFLIVCFVRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWG 260
The following BLAST results are available for this feature:
BLAST of CV712620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
COX3_ORNAN3.832e-4163.48Cytochrome c oxidase subunit 3 OS=Ornithorhynchus ... [more]
COX3_TETNG5.005e-4162.61Cytochrome c oxidase subunit 3 OS=Tetraodon nigrov... [more]
COX3_PYLLI5.005e-4163.48Cytochrome c oxidase subunit 3 OS=Pylaiella littor... [more]
COX3_GADMO5.005e-4161.74Cytochrome c oxidase subunit 3 OS=Gadus morhua GN=... [more]
COX3_CROLA8.537e-4161.74Cytochrome c oxidase subunit 3 OS=Crossostoma lacu... [more]
COX3_SQUAC1.456e-4060.87Cytochrome c oxidase subunit 3 OS=Squalus acanthia... [more]
COX3_TACAC1.902e-4061.74Cytochrome c oxidase subunit 3 OS=Tachyglossus acu... [more]
COX3_CERSI2.484e-4062.61Cytochrome c oxidase subunit 3 OS=Ceratotherium si... [more]
COX3_RHIUN3.244e-4061.74Cytochrome c oxidase subunit 3 OS=Rhinoceros unico... [more]
COX3_PHOVI4.237e-4061.74Cytochrome c oxidase subunit 3 OS=Phoca vitulina G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0001K13_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001K13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712620 ID=CV712620; Name=CV712620; organism=Citrus sinensis; type=EST; length=870bp
TTCTAACTGAAGCTGCTCACGTTTTTAAGCAGGGTTAACTACTGGTCTTG
GAAAGCCAGGCAGCTCAGGCAGTTCGGCTTGAAGACAAGACTCGTTCCGT
TCCGTACTTGACTTAGGAGCTAGTTTAGTTTTAGTACTCGCCCCTATCTC
TAAAGGCCGATATCTTTCGTAGCAGCCAAGGATGAGTTCAGTTCGATCCA
TTAGGTTCTTCGATTTGTTCAGAAAAGAAACGAGAGACAAGAAAACATCT
TTGATTACGATTAAAAGGAACAATCTCAAATAGATCAAGATCCAATTTCG
AGTCATTTCTTGGTGAACATAATCTGCCATAATCTCTTCGATCCCTTCAT
TGATGTGCCAGAATAAAGAGAGATTTAGTAGGAAAGTGGAAGAGACTTTT
TTGTATATGATAATCAAAGGGAGTAGTAAAGCTGCAGTAATTCTTTGGAA
AAGCCCGATTCTCTTTGTCTTCGAGCTTTCATTCCTCAATCCACTCTTTC
CTTCCTTCATATACCTCCCCACCAATAGATAGAGACAAATAGGAATAACC
AAACCACGTCTACAAAATGCCAGTACCATGCAGCTGCTTCAAAGCCAACG
TGATGCTCCTTGGTCAGATGACCAAGATATTGGCGAATACCACATATGAT
CAAAAAAAGAGTACCTATAATCACATGAAAACCATGAAAGCCAGTTGCTA
AGTAAAAGGTAGAACCATAAATACTATCCGAAATAGTGAAGGGTGCTTGA
TAATATTCCATTCCTTGAAAGCCGGTGAATACTAGAGCCAGTAAAACGGT
AGCTACTAGAGCATAAACTGCTCGTTTTTCCTTCCCCGCGAGTATAGCAT
GATGAGCCCAGTTACGGCAG
back to top