CV712620

Overview
NameCV712620
Unique NameCV712620
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length870
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV712620 vs. ExPASy Swiss-Prot
Match: COX3_GAZTH (Cytochrome c oxidase subunit 3 OS=Gazella thomsonii GN=MT-CO3 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.103e-39
Identity = 70/115 (60.87%), Postives = 80/115 (69.57%), Query Frame = -2 
Query:  516 WAHHAILAGKEKRXXXXXXXXXXXXXVFTGFQGMEYYQAPFTISDSIYGSTFYLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWG 860
            WAHH+++ G                  FT  Q  EYY+APFTISD +YGSTF++ATGFHG HVIIG+ FLI+C  RQ   H T  HH GFEAAAWYWHFVDVVWLFL+VSIYWWG
Sbjct:  146 WAHHSLMEGNRNHMLQALFITIALGVYFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWG 260
[Close]
BLAST of CV712620 vs. ExPASy Swiss-Prot
Match: COX3_GAZSU (Cytochrome c oxidase subunit 3 OS=Gazella subgutturosa GN=MT-CO3 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.103e-39
Identity = 70/115 (60.87%), Postives = 80/115 (69.57%), Query Frame = -2 
Query:  516 WAHHAILAGKEKRXXXXXXXXXXXXXVFTGFQGMEYYQAPFTISDSIYGSTFYLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWG 860
            WAHH+++ G                  FT  Q  EYY+APFTISD +YGSTF++ATGFHG HVIIG+ FLI+C  RQ   H T  HH GFEAAAWYWHFVDVVWLFL+VSIYWWG
Sbjct:  146 WAHHSLMEGNRNHMLQALFITIALGVYFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWG 260
[Close]
BLAST of CV712620 vs. ExPASy Swiss-Prot
Match: COX3_GAZSP (Cytochrome c oxidase subunit 3 OS=Gazella spekei GN=MT-CO3 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.103e-39
Identity = 70/115 (60.87%), Postives = 80/115 (69.57%), Query Frame = -2 
Query:  516 WAHHAILAGKEKRXXXXXXXXXXXXXVFTGFQGMEYYQAPFTISDSIYGSTFYLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWG 860
            WAHH+++ G                  FT  Q  EYY+APFTISD +YGSTF++ATGFHG HVIIG+ FLI+C  RQ   H T  HH GFEAAAWYWHFVDVVWLFL+VSIYWWG
Sbjct:  146 WAHHSLMEGNRNHMLQALFITIALGVYFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSSHHFGFEAAAWYWHFVDVVWLFLYVSIYWWG 260
[Close]
BLAST of CV712620 vs. ExPASy Swiss-Prot
Match: COX3_GAZSO (Cytochrome c oxidase subunit 3 OS=Gazella soemmerringii GN=MT-CO3 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.103e-39
Identity = 70/115 (60.87%), Postives = 80/115 (69.57%), Query Frame = -2 
Query:  516 WAHHAILAGKEKRXXXXXXXXXXXXXVFTGFQGMEYYQAPFTISDSIYGSTFYLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWG 860
            WAHH+++ G                  FT  Q  EYY+APFTISD +YGSTF++ATGFHG HVIIG+ FLI+C  RQ   H T  HH GFEAAAWYWHFVDVVWLFL+VSIYWWG
Sbjct:  146 WAHHSLMEGNRNHMLQALFITIALGVYFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSSHHFGFEAAAWYWHFVDVVWLFLYVSIYWWG 260
[Close]
BLAST of CV712620 vs. ExPASy Swiss-Prot
Match: COX3_GAZSA (Cytochrome c oxidase subunit 3 OS=Gazella saudiya GN=MT-CO3 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.103e-39
Identity = 70/115 (60.87%), Postives = 80/115 (69.57%), Query Frame = -2 
Query:  516 WAHHAILAGKEKRXXXXXXXXXXXXXVFTGFQGMEYYQAPFTISDSIYGSTFYLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWG 860
            WAHH+++ G                  FT  Q  EYY+APFTISD +YGSTF++ATGFHG HVIIG+ FLI+C  RQ   H T  HH GFEAAAWYWHFVDVVWLFL+VSIYWWG
Sbjct:  146 WAHHSLMEGNRNHMLQALFITIALGVYFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSSHHFGFEAAAWYWHFVDVVWLFLYVSIYWWG 260
[Close]
BLAST of CV712620 vs. ExPASy Swiss-Prot
Match: COX3_GAZRU (Cytochrome c oxidase subunit 3 OS=Gazella rufifrons GN=MT-CO3 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.103e-39
Identity = 70/115 (60.87%), Postives = 80/115 (69.57%), Query Frame = -2 
Query:  516 WAHHAILAGKEKRXXXXXXXXXXXXXVFTGFQGMEYYQAPFTISDSIYGSTFYLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWG 860
            WAHH+++ G                  FT  Q  EYY+APFTISD +YGSTF++ATGFHG HVIIG+ FLI+C  RQ   H T  HH GFEAAAWYWHFVDVVWLFL+VSIYWWG
Sbjct:  146 WAHHSLMEGNRNHMLQALFITIALGVYFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWG 260
[Close]
BLAST of CV712620 vs. ExPASy Swiss-Prot
Match: COX3_GAZLE (Cytochrome c oxidase subunit 3 OS=Gazella leptoceros GN=MT-CO3 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.103e-39
Identity = 70/115 (60.87%), Postives = 80/115 (69.57%), Query Frame = -2 
Query:  516 WAHHAILAGKEKRXXXXXXXXXXXXXVFTGFQGMEYYQAPFTISDSIYGSTFYLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWG 860
            WAHH+++ G                  FT  Q  EYY+APFTISD +YGSTF++ATGFHG HVIIG+ FLI+C  RQ   H T  HH GFEAAAWYWHFVDVVWLFL+VSIYWWG
Sbjct:  146 WAHHSLMEGNRNHMLQALFITIALGVYFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWG 260
[Close]
BLAST of CV712620 vs. ExPASy Swiss-Prot
Match: COX3_GAZGR (Cytochrome c oxidase subunit 3 OS=Gazella granti GN=MT-CO3 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.103e-39
Identity = 70/115 (60.87%), Postives = 80/115 (69.57%), Query Frame = -2 
Query:  516 WAHHAILAGKEKRXXXXXXXXXXXXXVFTGFQGMEYYQAPFTISDSIYGSTFYLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWG 860
            WAHH+++ G                  FT  Q  EYY+APFTISD +YGSTF++ATGFHG HVIIG+ FLI+C  RQ   H T  HH GFEAAAWYWHFVDVVWLFL+VSIYWWG
Sbjct:  146 WAHHSLMEGNRNHMLQALFITIALGVYFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSSHHFGFEAAAWYWHFVDVVWLFLYVSIYWWG 260
[Close]
BLAST of CV712620 vs. ExPASy Swiss-Prot
Match: COX3_GAZGA (Cytochrome c oxidase subunit 3 OS=Gazella gazella GN=MT-CO3 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.103e-39
Identity = 70/115 (60.87%), Postives = 80/115 (69.57%), Query Frame = -2 
Query:  516 WAHHAILAGKEKRXXXXXXXXXXXXXVFTGFQGMEYYQAPFTISDSIYGSTFYLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWG 860
            WAHH+++ G                  FT  Q  EYY+APFTISD +YGSTF++ATGFHG HVIIG+ FLI+C  RQ   H T  HH GFEAAAWYWHFVDVVWLFL+VSIYWWG
Sbjct:  146 WAHHSLMEGNRNHMLQALFITIALGVYFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSSHHFGFEAAAWYWHFVDVVWLFLYVSIYWWG 260
[Close]
BLAST of CV712620 vs. ExPASy Swiss-Prot
Match: COX3_GAZDO (Cytochrome c oxidase subunit 3 OS=Gazella dorcas GN=MT-CO3 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.103e-39
Identity = 70/115 (60.87%), Postives = 80/115 (69.57%), Query Frame = -2 
Query:  516 WAHHAILAGKEKRXXXXXXXXXXXXXVFTGFQGMEYYQAPFTISDSIYGSTFYLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWG 860
            WAHH+++ G                  FT  Q  EYY+APFTISD +YGSTF++ATGFHG HVIIG+ FLI+C  RQ   H T  HH GFEAAAWYWHFVDVVWLFL+VSIYWWG
Sbjct:  146 WAHHSLMEGNRNHMLQALFITIALGVYFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSSHHFGFEAAAWYWHFVDVVWLFLYVSIYWWG 260
The following BLAST results are available for this feature:
BLAST of CV712620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
COX3_GAZTH2.103e-3960.87Cytochrome c oxidase subunit 3 OS=Gazella thomsoni... [more]
COX3_GAZSU2.103e-3960.87Cytochrome c oxidase subunit 3 OS=Gazella subguttu... [more]
COX3_GAZSP2.103e-3960.87Cytochrome c oxidase subunit 3 OS=Gazella spekei G... [more]
COX3_GAZSO2.103e-3960.87Cytochrome c oxidase subunit 3 OS=Gazella soemmerr... [more]
COX3_GAZSA2.103e-3960.87Cytochrome c oxidase subunit 3 OS=Gazella saudiya ... [more]
COX3_GAZRU2.103e-3960.87Cytochrome c oxidase subunit 3 OS=Gazella rufifron... [more]
COX3_GAZLE2.103e-3960.87Cytochrome c oxidase subunit 3 OS=Gazella leptocer... [more]
COX3_GAZGR2.103e-3960.87Cytochrome c oxidase subunit 3 OS=Gazella granti G... [more]
COX3_GAZGA2.103e-3960.87Cytochrome c oxidase subunit 3 OS=Gazella gazella ... [more]
COX3_GAZDO2.103e-3960.87Cytochrome c oxidase subunit 3 OS=Gazella dorcas G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0001K13_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001K13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712620 ID=CV712620; Name=CV712620; organism=Citrus sinensis; type=EST; length=870bp
TTCTAACTGAAGCTGCTCACGTTTTTAAGCAGGGTTAACTACTGGTCTTG
GAAAGCCAGGCAGCTCAGGCAGTTCGGCTTGAAGACAAGACTCGTTCCGT
TCCGTACTTGACTTAGGAGCTAGTTTAGTTTTAGTACTCGCCCCTATCTC
TAAAGGCCGATATCTTTCGTAGCAGCCAAGGATGAGTTCAGTTCGATCCA
TTAGGTTCTTCGATTTGTTCAGAAAAGAAACGAGAGACAAGAAAACATCT
TTGATTACGATTAAAAGGAACAATCTCAAATAGATCAAGATCCAATTTCG
AGTCATTTCTTGGTGAACATAATCTGCCATAATCTCTTCGATCCCTTCAT
TGATGTGCCAGAATAAAGAGAGATTTAGTAGGAAAGTGGAAGAGACTTTT
TTGTATATGATAATCAAAGGGAGTAGTAAAGCTGCAGTAATTCTTTGGAA
AAGCCCGATTCTCTTTGTCTTCGAGCTTTCATTCCTCAATCCACTCTTTC
CTTCCTTCATATACCTCCCCACCAATAGATAGAGACAAATAGGAATAACC
AAACCACGTCTACAAAATGCCAGTACCATGCAGCTGCTTCAAAGCCAACG
TGATGCTCCTTGGTCAGATGACCAAGATATTGGCGAATACCACATATGAT
CAAAAAAAGAGTACCTATAATCACATGAAAACCATGAAAGCCAGTTGCTA
AGTAAAAGGTAGAACCATAAATACTATCCGAAATAGTGAAGGGTGCTTGA
TAATATTCCATTCCTTGAAAGCCGGTGAATACTAGAGCCAGTAAAACGGT
AGCTACTAGAGCATAAACTGCTCGTTTTTCCTTCCCCGCGAGTATAGCAT
GATGAGCCCAGTTACGGCAG
back to top