CV712551

Overview
NameCV712551
Unique NameCV712551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_RHOPT (Ribosome-recycling factor OS=Rhodopseudomonas palustris (strain TIE-1) GN=frr PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.016e-30
Identity = 63/149 (42.28%), Postives = 102/149 (68.46%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDL 790
            ++K RM+     ++     +RTGR++ +ML+ ++V+ YGS + L  +A ++ P+   + +Q +DKS +K++EK IV S+LG++P  +G+VIRL +P+L  ERRKEL KV  K AE  +VAVR++RRD L   +KL+K  ++SED+ K L
Sbjct:    9 ELKRRMQGAAQSLKHELGGLRTGRASASMLEPVQVDAYGSHMPLNQVATVSVPEPRLISVQVWDKSMVKAVEKGIVDSNLGLSPATEGQVIRLRIPELNEERRKELVKVAHKYAEAARVAVRHVRRDGLDTIKKLEKAHEISEDDQKRL 157          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_RHOPA (Ribosome-recycling factor OS=Rhodopseudomonas palustris GN=frr PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.016e-30
Identity = 63/149 (42.28%), Postives = 102/149 (68.46%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDL 790
            ++K RM+     ++     +RTGR++ +ML+ ++V+ YGS + L  +A ++ P+   + +Q +DKS +K++EK IV S+LG++P  +G+VIRL +P+L  ERRKEL KV  K AE  +VAVR++RRD L   +KL+K  ++SED+ K L
Sbjct:    9 ELKRRMQGAAQSLKHELGGLRTGRASASMLEPVQVDAYGSHMPLNQVATVSVPEPRLISVQVWDKSMVKAVEKGIVDSNLGLSPATEGQVIRLRIPELNEERRKELVKVAHKYAEAARVAVRHVRRDGLDTIKKLEKAHEISEDDQKRL 157          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_PARD8 (Ribosome-recycling factor OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=frr PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.016e-30
Identity = 62/144 (43.06%), Postives = 99/144 (68.75%), Query Frame = 2
Query:  356 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKD 787
            +M   I+ +    + +R G++NP +LD ++V YYG+PV L ++A +  PD+ +++I P++K  ++ IEK I+ S+LG+TP N+GEVIRL +P LT ERR++L K   ++AE  K++VRN RRDA++A +K  K   + ED  KD
Sbjct:   14 KMTFAIEYLDEQLSHIRAGKANPKILDCVKVMYYGAPVPLTNVATVTVPDARTIMITPWEKKIIRDIEKGILDSELGITPENNGEVIRLGIPPLTEERRRQLVKQCKQEAENAKISVRNARRDAIEALKKSIKSDGVPEDVEKD 157          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_METPP (Ribosome-recycling factor OS=Methylibium petroleiphilum (strain PM1) GN=frr PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.016e-30
Identity = 63/149 (42.28%), Postives = 102/149 (68.46%), Query Frame = 2
Query:  344 DVKARME----RTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDN 778
            D+K   E    R+I+  ++    +RTGR++P +LD++ VEYYGS VS+  +A ++  D+ ++ +QP++K     IEKAI  SDLG+ P++ GE++R+ +P L  ERR++L+KVV    E+ ++AVRN+RRDA    +KL K+K +SED+
Sbjct:    5 DIKKTFEQKSARSIESFKSELQKIRTGRAHPGILDQVHVEYYGSMVSISQVANVSLLDARTISVQPWEKGMGPKIEKAIRESDLGLNPSSQGELLRVPMPALNEERRRDLTKVVRGAGEDARIAVRNLRRDANDQAKKLLKDKAISEDD 153          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_SACD2 (Ribosome-recycling factor OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=frr PE=3 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.632e-30
Identity = 63/145 (43.45%), Postives = 97/145 (66.90%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDN 778
            D + RM R I+ + T+FN +RTGR++P++LD + V YYGS   L  +A +   D+ +L I P++K+ +  IEKAI+ SDLG+ P   G++IR+ +P LT E RK   K    +AE  +V++RN+RRDAL   + L K+K++SED+
Sbjct:    8 DSEERMSRAIEALGTHFNKIRTGRAHPSILDGVMVSYYGSATPLSQVANVTVLDARTLSISPWEKNIVPEIEKAIMKSDLGLNPVTTGDLIRVPMPMLTEETRKGYIKRARAEAESARVSIRNVRRDALAEVKALVKDKEISEDD 152          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_POLNA (Ribosome-recycling factor OS=Polaromonas naphthalenivorans (strain CJ2) GN=frr PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.632e-30
Identity = 61/141 (43.26%), Postives = 96/141 (68.09%), Query Frame = 2
Query:  356 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDN 778
            +M+++++  + N   +RTGR+NP +LD + V+YYGS V +  +A +   D+ ++ + P++K     IEKAI  SDLG+ P + G++IR+ +P +T ERRKEL+KVV  + E  KVA+RN+RRDA    +KL K+K  SED+
Sbjct:   13 KMQQSLESFQHNLTKIRTGRANPGLLDTVHVDYYGSMVPISQVANVALLDARTISVSPWEKGMGAKIEKAIRDSDLGLNPASQGDLIRVPMPAMTEERRKELTKVVRAEGEHAKVAIRNLRRDANDGVKKLVKDKLASEDD 153          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_NEIMF (Ribosome-recycling factor OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=frr PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.632e-30
Identity = 60/145 (41.38%), Postives = 104/145 (71.72%), Query Frame = 2
Query:  350 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVK 784
            + +M+R++++++ N   VRTGR++  +LD++EVEY+GS V +  +A +   D+ ++ ++P++ +    +EKAI  S+LG+ P   G++IR+ +P LT ERRK+L KVV  +AEEG+V++RN+RRDA    +KL K+K++SED  +
Sbjct:   10 EGKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTLLDARTIGVKPFEGNMAAKVEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKDLIKVVRGEAEEGRVSIRNVRRDANDHIKKLLKDKEISEDEAR 154          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_NEIMB (Ribosome-recycling factor OS=Neisseria meningitidis serogroup B GN=frr PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.632e-30
Identity = 60/145 (41.38%), Postives = 104/145 (71.72%), Query Frame = 2
Query:  350 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVK 784
            + +M+R++++++ N   VRTGR++  +LD++EVEY+GS V +  +A +   D+ ++ ++P++ +    +EKAI  S+LG+ P   G++IR+ +P LT ERRK+L KVV  +AEEG+V++RN+RRDA    +KL K+K++SED  +
Sbjct:   10 EGKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTLLDARTIGVKPFEGNMAAKVEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKDLIKVVRGEAEEGRVSIRNVRRDANDHIKKLLKDKEISEDEAR 154          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_NEIMA (Ribosome-recycling factor OS=Neisseria meningitidis serogroup A GN=frr PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.632e-30
Identity = 60/145 (41.38%), Postives = 104/145 (71.72%), Query Frame = 2
Query:  350 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVK 784
            + +M+R++++++ N   VRTGR++  +LD++EVEY+GS V +  +A +   D+ ++ ++P++ +    +EKAI  S+LG+ P   G++IR+ +P LT ERRK+L KVV  +AEEG+V++RN+RRDA    +KL K+K++SED  +
Sbjct:   10 EGKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTLLDARTIGVKPFEGNMAAKVEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKDLIKVVRGEAEEGRVSIRNVRRDANDHIKKLLKDKEISEDEAR 154          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_NEIG1 (Ribosome-recycling factor OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=frr PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.632e-30
Identity = 60/145 (41.38%), Postives = 104/145 (71.72%), Query Frame = 2
Query:  350 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVK 784
            + +M+R++++++ N   VRTGR++  +LD++EVEY+GS V +  +A +   D+ ++ ++P++ +    +EKAI  S+LG+ P   G++IR+ +P LT ERRK+L KVV  +AEEG+V++RN+RRDA    +KL K+K++SED  +
Sbjct:   10 EGKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTLLDARTIGVKPFEGNMAAKVEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKDLIKVVRGEAEEGRVSIRNVRRDANDHIKKLLKDKEISEDEAR 154          
The following BLAST results are available for this feature:
BLAST of CV712551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_RHOPT2.016e-3042.28Ribosome-recycling factor OS=Rhodopseudomonas palu... [more]
RRF_RHOPA2.016e-3042.28Ribosome-recycling factor OS=Rhodopseudomonas palu... [more]
RRF_PARD82.016e-3043.06Ribosome-recycling factor OS=Parabacteroides dista... [more]
RRF_METPP2.016e-3042.28Ribosome-recycling factor OS=Methylibium petroleip... [more]
RRF_SACD22.632e-3043.45Ribosome-recycling factor OS=Saccharophagus degrad... [more]
RRF_POLNA2.632e-3043.26Ribosome-recycling factor OS=Polaromonas naphthale... [more]
RRF_NEIMF2.632e-3041.38Ribosome-recycling factor OS=Neisseria meningitidi... [more]
RRF_NEIMB2.632e-3041.38Ribosome-recycling factor OS=Neisseria meningitidi... [more]
RRF_NEIMA2.632e-3041.38Ribosome-recycling factor OS=Neisseria meningitidi... [more]
RRF_NEIG12.632e-3041.38Ribosome-recycling factor OS=Neisseria gonorrhoeae... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I21_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712551 ID=CV712551; Name=CV712551; organism=Citrus sinensis; type=EST; length=795bp
AAGACACTCATTTTGAACCAACTAATTTCTTAAGTCTGAGCGAGCGTTCA
TGGCCACGCACTTTTCTTCAACAGGGCCCATGCGGTCCATTTTCCAACTG
AAATCAAATCCTCCCAAATGCCTCCTTTTCCTCCCTGATTCTTGTCATAG
AAGAGCCGAAACTGCCACGTGCCGTGCTAGCAGCGTTAGTGTGCGCCAGT
GGAGCTCAACTGCAAACTACTCTAGACTTGTGAAATTATCCAACAAACCT
ATCGTTGTAAGACAACTGGCACACAAGAGAAATGGAGTTGTGAGGTGTGC
AACTATTGAAGAAATTGAAGCGGAAAAATCTTCCATTGAGAAGGATGTTA
AAGCTAGGATGGAAAGGACTATCGATATGGTCCGAACCAATTTCAATTCC
GTGAGGACAGGAAGATCGAATCCAGCTATGCTAGATAAGATTGAGGTGGA
ATACTATGGAAGCCCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCC
CTGATTCAAGTTCTCTATTGATTCAACCATATGACAAATCCAGCTTAAAG
TCTATAGAGAAGGCCATAGTAAGCTCTGATCTTGGCATGACCCCAAACAA
TGATGGTGAAGTCATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGA
GGAAGGAACTGTCAAAGGTTGTGGCCAAACAGGCTGAAGAAGGGAAGGTG
GCAGTTAGGAATATAAGAAGAGATGCGTTAAAAGCTTATGAAAAACTTCA
GAAGGAGAAGAAGCTCTCTGAAGACAATGTGAAGGACTTGTCAAG
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