CV712550

Overview
NameCV712550
Unique NameCV712550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_STRA1 (Ribosome-recycling factor OS=Streptococcus agalactiae serotype Ia GN=frr PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.063e-40
Identity = 79/163 (48.47%), Postives = 114/163 (69.94%), Query Frame = -3
Query:  179 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 667
            R E++   +   F  +R GR+N ++LD+I+VEYYG+P  L  +A I  P++  LLI P+DKSS+K IE+AI  SDLG+ P NDG VIRL +P LT E R++L+K V K  E  K+A+RNIRRDA+   +K +K K+++ED++K L  D+QK TD+ +K ID +
Sbjct:   12 RFEQSHQSLSREFAGIRAGRANASLLDRIQVEYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDIERAINESDLGINPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKIAIRNIRRDAMDEAKKQEKNKEITEDDLKSLEKDIQKATDDAVKHIDEM 174          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_LEUCK (Ribosome-recycling factor OS=Leuconostoc citreum (strain KM20) GN=frr PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.063e-40
Identity = 80/167 (47.90%), Postives = 122/167 (73.05%), Query Frame = -3
Query:  179 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 679
            D K+RM+   D ++    S+RTGR+NP +LD+IEVEYYG+   L  +A I+ P++  LLI P+DK++L+ I +AI  SDLG+ P++DG ++RL +PQ+T E RK+L+K V  +AE+ KV+VRN+RRDA+   + ++KEK++ ED+V+   +D+QKLTD  +K ID I
Sbjct:    7 DAKSRMQGAQDALQRELTSIRTGRANPHILDRIEVEYYGAMTPLNQVASISVPEARVLLITPFDKTALEEIIRAINMSDLGLNPSSDGNIVRLMIPQMTEEGRKDLAKQVKAEAEKAKVSVRNVRRDAM---DSVKKEKEMPEDDVRKAENDIQKLTDNNIKAIDDI 170          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_CLOBH (Ribosome-recycling factor OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=frr PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.063e-40
Identity = 83/163 (50.92%), Postives = 116/163 (71.17%), Query Frame = -3
Query:  179 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 667
            +M +TI  ++    S++ GR+NPAMLD+IE EYYGS   L  +  I+ P++  LLIQP+DK +L +IEKAI+ SDLG+ P+NDG VIRL +P+LT E RK + K V K  EE KVA+R+IRRD     + L+K+  +SED++K    D+QK TD+Y+K+IDSI
Sbjct:   12 KMGKTIVALKKELASMKAGRANPAMLDRIEAEYYGSMTPLNQLGNISVPEARVLLIQPWDKGALSAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKKTGEEAKVAIRSIRRDCNDDVKNLKKD-DVSEDDIKKAEDDIQKKTDKYIKEIDSI 173          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_CLOB1 (Ribosome-recycling factor OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=frr PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.063e-40
Identity = 83/163 (50.92%), Postives = 116/163 (71.17%), Query Frame = -3
Query:  179 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 667
            +M +TI  ++    S++ GR+NPAMLD+IE EYYGS   L  +  I+ P++  LLIQP+DK +L +IEKAI+ SDLG+ P+NDG VIRL +P+LT E RK + K V K  EE KVA+R+IRRD     + L+K+  +SED++K    D+QK TD+Y+K+IDSI
Sbjct:   12 KMGKTIVALKKELASMKAGRANPAMLDRIEAEYYGSMTPLNQLGNISVPEARVLLIQPWDKGALSAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKKTGEEAKVAIRSIRRDCNDDVKNLKKD-DVSEDDIKKAEDDIQKKTDKYIKEIDSI 173          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_BACCN (Ribosome-recycling factor OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=frr PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.063e-40
Identity = 77/165 (46.67%), Postives = 118/165 (71.52%), Query Frame = -3
Query:  173 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 667
            +ME+ +        +VR GR++ ++LDK++V+YYG+P  +  +A I  P++  L+IQPYDK+S+  IEKAI+ +DLG+ P+NDG VIR+  P LT ERR+EL KVV K AE+ KVA+RN+RRD     +KL+K  +++ED+++  + D+QK TD+Y+ K+D I K
Sbjct:   12 KMEKAVAAYSRELATVRAGRASASILDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGSVIRIAFPALTEERRRELVKVVKKYAEDAKVAIRNVRRDGNDELKKLEKAGEMTEDDLRGYTEDIQKETDKYIAKVDEIAK 176          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_LEPBL (Ribosome-recycling factor OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=frr PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.389e-40
Identity = 78/166 (46.99%), Postives = 121/166 (72.89%), Query Frame = -3
Query:  179 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 676
            +K +M++TID+V+ +F +VRTGR+NP++++ I V+YYG+   +  +  I+ P+   L+I PYDK  +K IEKAI +S LG+ P+NDG VIR+ +P+LT ERRKEL+K+V  ++EE KVA+RNIRRDA++  +K    + LS+D +K +   +QK TD Y+ KI ++
Sbjct:   10 MKTKMDKTIDLVKKDFGTVRTGRANPSLVEDIRVDYYGTLTPINQLGNISVPEPRMLVISPYDKGIMKDIEKAIQASGLGLQPSNDGVVIRIIIPELTGERRKELAKIVKSKSEEKKVAIRNIRRDAMEDLKK--HTEGLSQDEIKTIQDRIQKTTDSYIDKISAL 173          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_LEPBJ (Ribosome-recycling factor OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=frr PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.389e-40
Identity = 78/166 (46.99%), Postives = 121/166 (72.89%), Query Frame = -3
Query:  179 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 676
            +K +M++TID+V+ +F +VRTGR+NP++++ I V+YYG+   +  +  I+ P+   L+I PYDK  +K IEKAI +S LG+ P+NDG VIR+ +P+LT ERRKEL+K+V  ++EE KVA+RNIRRDA++  +K    + LS+D +K +   +QK TD Y+ KI ++
Sbjct:   10 MKTKMDKTIDLVKKDFGTVRTGRANPSLVEDIRVDYYGTLTPINQLGNISVPEPRMLVISPYDKGIMKDIEKAIQASGLGLQPSNDGVVIRIIIPELTGERRKELAKIVKSKSEEKKVAIRNIRRDAMEDLKK--HTEGLSQDEIKTIQDRIQKTTDSYIDKISAL 173          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_LEGPA (Ribosome-recycling factor OS=Legionella pneumophila (strain Paris) GN=frr PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.389e-40
Identity = 77/167 (46.11%), Postives = 121/167 (72.46%), Query Frame = -3
Query:  179 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 679
            D + RM++TI+ + ++ + +RTGR+N ++LD + V+YYGSP  L  +A I T DS ++L+ P++KS + +IEKAI++SDLG+ P   G  IR+ +P LT ERRKEL KVV  + E+G+V++RNIRRDA    ++L KEK +SED+ +  +  +QKLTD Y+ ++D++
Sbjct:    8 DSEKRMKKTIEALHSDMSKIRTGRANASLLDHVMVDYYGSPTPLSQVANITTSDSRTILVTPWEKSMVAAIEKAILNSDLGLNPATAGTAIRVPMPPLTEERRKELIKVVRHEGEQGRVSIRNIRRDANNQLKELVKEKAISEDDERRAAEAIQKLTDRYISEVDAV 174          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_DEHSC (Ribosome-recycling factor OS=Dehalococcoides sp. (strain CBDB1) GN=frr PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.389e-40
Identity = 76/163 (46.63%), Postives = 118/163 (72.39%), Query Frame = -3
Query:  179 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 667
            +M  ++D++    + +RTGRS+PA+++ I VEY G P  +  +A I+ PD   + IQP+D+S L +IEKAI+ SDLG+ PNNDG +IRL +P L+ ERR+E+ K+V K+ EE K+A+RN+RRDA+   +KL+K K++S+D++K  S  LQK+TD ++ K D +
Sbjct:   12 KMSASLDVLLQELSGIRTGRSSPALVEHIRVEYAGVPTPINHLANISAPDPRYITIQPWDRSCLSAIEKAIMKSDLGLMPNNDGNIIRLNIPPLSEERRQEMIKIVNKRLEEDKIAMRNVRRDAMDEMKKLEKAKEISQDDLKRGSDQLQKITDNFIAKADKL 174          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_DEHE1 (Ribosome-recycling factor OS=Dehalococcoides ethenogenes (strain 195) GN=frr PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.389e-40
Identity = 76/163 (46.63%), Postives = 119/163 (73.01%), Query Frame = -3
Query:  179 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 667
            +M  ++D++    + +RTGRS+PA+++ I+VEY G P  +  +A I  PD   + IQP+D+S L +IEKAI+ SDLG+ PNNDG +IRL +P L+ ERR+E+ K+V+K+ EE K+A+RN+RRDA+   +KL+K K++S+D++K  S  LQK+TD ++ K D +
Sbjct:   12 KMAASLDVLSQELSGIRTGRSSPALVEHIKVEYAGVPTPINHLASIAAPDPRYITIQPWDRSCLSAIEKAIMKSDLGLMPNNDGNIIRLNIPPLSEERRQEMIKMVSKRLEEDKIAMRNVRRDAMDEMKKLEKSKEISQDDLKRGSDQLQKITDSFIAKADKL 174          
The following BLAST results are available for this feature:
BLAST of CV712550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_STRA11.063e-4048.47Ribosome-recycling factor OS=Streptococcus agalact... [more]
RRF_LEUCK1.063e-4047.90Ribosome-recycling factor OS=Leuconostoc citreum (... [more]
RRF_CLOBH1.063e-4050.92Ribosome-recycling factor OS=Clostridium botulinum... [more]
RRF_CLOB11.063e-4050.92Ribosome-recycling factor OS=Clostridium botulinum... [more]
RRF_BACCN1.063e-4046.67Ribosome-recycling factor OS=Bacillus cereus subsp... [more]
RRF_LEPBL1.389e-4046.99Ribosome-recycling factor OS=Leptospira borgpeters... [more]
RRF_LEPBJ1.389e-4046.99Ribosome-recycling factor OS=Leptospira borgpeters... [more]
RRF_LEGPA1.389e-4046.11Ribosome-recycling factor OS=Legionella pneumophil... [more]
RRF_DEHSC1.389e-4046.63Ribosome-recycling factor OS=Dehalococcoides sp. (... [more]
RRF_DEHE11.389e-4046.63Ribosome-recycling factor OS=Dehalococcoides ethen... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I21_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712550 ID=CV712550; Name=CV712550; organism=Citrus sinensis; type=EST; length=846bp
CCCCCTTTTTTTCTAACAAAATATCCACCCGGTGTCTCCCATTAGTATCA
AAAAATGCCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTCTGAGA
TTCACTAGAGAGCTCACCATTACATTTGTGTGTAAACAATCATTAAACCT
TCAACAACTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCTTCATA
TACTCATCTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACATTGTC
TTCAGAGAGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAACGCAT
CTCTTCTTATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTTTGGCC
ACAACCTTTGACAGTTCCTTCCTCCTTTCGGATGTCAATTGAGGAAGGGT
TAACCGTATGACTTCACCATCATTGTTTGGGGTCATGCCAAGATCAGAGC
TTACTATGGCCTTCTCTATAGACTTTAAGCTGGATTTGTCATATGGTTGA
ATCAATAGAGAACTTGAATCAGGGGTATTGATTTGAGCTATGCTCTTCAA
ACTTACTGGGCTTCCATAGTATTCCACCTCAATCTTATCTAGCATAGCTG
GATTCGATCTTCCTGTCCTCACGGAATTGAAATTGGTTCGGACCATATCG
ATAGTCCTTTCCATCCTAGCTTTAACATCCTTCTCAATGGAAGATTTTTC
CGCTTCAATTTCTTCAATAGTTGCACACCTCACAACTCCATTTCTCTTGT
GTGCCAGTTGTCTTACAACGATAGGTTTGTTGGATAATTTCACAAGTCTA
GAGTAGTTTGCAGCTGAGCTCTACTGGCGCACACTAACGCTGCTAG
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