CV712550

Overview
NameCV712550
Unique NameCV712550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_CLOK5 (Ribosome-recycling factor OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=frr PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.389e-40
Identity = 79/166 (47.59%), Postives = 119/166 (71.69%), Query Frame = -3
Query:  170 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 667
            +M +T+D++     S++ GR+NPA+LDKIEVEYYG+   +  +A I+ P++  L IQP+DKS+LKSIEKAI+ SDLG+ P+NDGE+IRL +P+LT E RK + K + K  E+ KVA+R IRR+    ++ L+K+  +SED +K     +QK TD ++K ID+I ++
Sbjct:   12 KMNKTVDVLVKELASMKAGRANPAILDKIEVEYYGAMTPISQLAGISIPEARILAIQPWDKSALKSIEKAILKSDLGINPSNDGEIIRLIIPELTEETRKNIVKNIKKTGEDSKVAIRGIRRECNDKFKALKKKNDISEDEIKKGEEQIQKKTDIFIKNIDAILEK 177          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_CLOK1 (Ribosome-recycling factor OS=Clostridium kluyveri (strain NBRC 12016) GN=frr PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.389e-40
Identity = 79/166 (47.59%), Postives = 119/166 (71.69%), Query Frame = -3
Query:  170 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 667
            +M +T+D++     S++ GR+NPA+LDKIEVEYYG+   +  +A I+ P++  L IQP+DKS+LKSIEKAI+ SDLG+ P+NDGE+IRL +P+LT E RK + K + K  E+ KVA+R IRR+    ++ L+K+  +SED +K     +QK TD ++K ID+I ++
Sbjct:   12 KMNKTVDVLVKELASMKAGRANPAILDKIEVEYYGAMTPISQLAGISIPEARILAIQPWDKSALKSIEKAILKSDLGINPSNDGEIIRLIIPELTEETRKNIVKNIKKTGEDSKVAIRGIRRECNDKFKALKKKNDISEDEIKKGEEQIQKKTDIFIKNIDAILEK 177          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_BACHK (Ribosome-recycling factor OS=Bacillus thuringiensis subsp. konkukian GN=frr PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.389e-40
Identity = 78/165 (47.27%), Postives = 118/165 (71.52%), Query Frame = -3
Query:  173 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 667
            +ME+ +        +VR GR++ ++LDK++V+YYG+P  +  +A I  P++  L+IQPYDK+S+  IEKAI+ +DLG+ P+NDG VIR+  P LT ERR++L KVV K AEE KVAVRN+RRD     +KL+K  +++ED+++  + D+QK TD+Y+ K+D I K
Sbjct:   12 KMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAK 176          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_BACCZ (Ribosome-recycling factor OS=Bacillus cereus (strain ZK / E33L) GN=frr PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.389e-40
Identity = 78/165 (47.27%), Postives = 118/165 (71.52%), Query Frame = -3
Query:  173 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 667
            +ME+ +        +VR GR++ ++LDK++V+YYG+P  +  +A I  P++  L+IQPYDK+S+  IEKAI+ +DLG+ P+NDG VIR+  P LT ERR++L KVV K AEE KVAVRN+RRD     +KL+K  +++ED+++  + D+QK TD+Y+ K+D I K
Sbjct:   12 KMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAK 176          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_BACC3 (Ribosome-recycling factor OS=Bacillus cereus (strain 03BB102) GN=frr PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.389e-40
Identity = 78/165 (47.27%), Postives = 118/165 (71.52%), Query Frame = -3
Query:  173 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 667
            +ME+ +        +VR GR++ ++LDK++V+YYG+P  +  +A I  P++  L+IQPYDK+S+  IEKAI+ +DLG+ P+NDG VIR+  P LT ERR++L KVV K AEE KVAVRN+RRD     +KL+K  +++ED+++  + D+QK TD+Y+ K+D I K
Sbjct:   12 KMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAK 176          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_BACC2 (Ribosome-recycling factor OS=Bacillus cereus (strain G9842) GN=frr PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.389e-40
Identity = 78/165 (47.27%), Postives = 118/165 (71.52%), Query Frame = -3
Query:  173 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 667
            +ME+ +        +VR GR++ ++LDK++V+YYG+P  +  +A I  P++  L+IQPYDK+S+  IEKAI+ +DLG+ P+NDG VIR+  P LT ERR++L KVV K AEE KVAVRN+RRD     +KL+K  +++ED+++  + D+QK TD+Y+ K+D I K
Sbjct:   12 KMEKAVAAYSRELATVRAGRASSSVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAK 176          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_BACC0 (Ribosome-recycling factor OS=Bacillus cereus (strain AH820) GN=frr PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.389e-40
Identity = 78/165 (47.27%), Postives = 118/165 (71.52%), Query Frame = -3
Query:  173 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 667
            +ME+ +        +VR GR++ ++LDK++V+YYG+P  +  +A I  P++  L+IQPYDK+S+  IEKAI+ +DLG+ P+NDG VIR+  P LT ERR++L KVV K AEE KVAVRN+RRD     +KL+K  +++ED+++  + D+QK TD+Y+ K+D I K
Sbjct:   12 KMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAK 176          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_BACAN (Ribosome-recycling factor OS=Bacillus anthracis GN=frr PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.389e-40
Identity = 78/165 (47.27%), Postives = 118/165 (71.52%), Query Frame = -3
Query:  173 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 667
            +ME+ +        +VR GR++ ++LDK++V+YYG+P  +  +A I  P++  L+IQPYDK+S+  IEKAI+ +DLG+ P+NDG VIR+  P LT ERR++L KVV K AEE KVAVRN+RRD     +KL+K  +++ED+++  + D+QK TD+Y+ K+D I K
Sbjct:   12 KMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAK 176          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_BACAH (Ribosome-recycling factor OS=Bacillus thuringiensis (strain Al Hakam) GN=frr PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.389e-40
Identity = 78/165 (47.27%), Postives = 118/165 (71.52%), Query Frame = -3
Query:  173 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 667
            +ME+ +        +VR GR++ ++LDK++V+YYG+P  +  +A I  P++  L+IQPYDK+S+  IEKAI+ +DLG+ P+NDG VIR+  P LT ERR++L KVV K AEE KVAVRN+RRD     +KL+K  +++ED+++  + D+QK TD+Y+ K+D I K
Sbjct:   12 KMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAK 176          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_BACAC (Ribosome-recycling factor OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=frr PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.389e-40
Identity = 78/165 (47.27%), Postives = 118/165 (71.52%), Query Frame = -3
Query:  173 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 667
            +ME+ +        +VR GR++ ++LDK++V+YYG+P  +  +A I  P++  L+IQPYDK+S+  IEKAI+ +DLG+ P+NDG VIR+  P LT ERR++L KVV K AEE KVAVRN+RRD     +KL+K  +++ED+++  + D+QK TD+Y+ K+D I K
Sbjct:   12 KMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAK 176          
The following BLAST results are available for this feature:
BLAST of CV712550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_CLOK51.389e-4047.59Ribosome-recycling factor OS=Clostridium kluyveri ... [more]
RRF_CLOK11.389e-4047.59Ribosome-recycling factor OS=Clostridium kluyveri ... [more]
RRF_BACHK1.389e-4047.27Ribosome-recycling factor OS=Bacillus thuringiensi... [more]
RRF_BACCZ1.389e-4047.27Ribosome-recycling factor OS=Bacillus cereus (stra... [more]
RRF_BACC31.389e-4047.27Ribosome-recycling factor OS=Bacillus cereus (stra... [more]
RRF_BACC21.389e-4047.27Ribosome-recycling factor OS=Bacillus cereus (stra... [more]
RRF_BACC01.389e-4047.27Ribosome-recycling factor OS=Bacillus cereus (stra... [more]
RRF_BACAN1.389e-4047.27Ribosome-recycling factor OS=Bacillus anthracis GN... [more]
RRF_BACAH1.389e-4047.27Ribosome-recycling factor OS=Bacillus thuringiensi... [more]
RRF_BACAC1.389e-4047.27Ribosome-recycling factor OS=Bacillus anthracis (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I21_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712550 ID=CV712550; Name=CV712550; organism=Citrus sinensis; type=EST; length=846bp
CCCCCTTTTTTTCTAACAAAATATCCACCCGGTGTCTCCCATTAGTATCA
AAAAATGCCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTCTGAGA
TTCACTAGAGAGCTCACCATTACATTTGTGTGTAAACAATCATTAAACCT
TCAACAACTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCTTCATA
TACTCATCTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACATTGTC
TTCAGAGAGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAACGCAT
CTCTTCTTATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTTTGGCC
ACAACCTTTGACAGTTCCTTCCTCCTTTCGGATGTCAATTGAGGAAGGGT
TAACCGTATGACTTCACCATCATTGTTTGGGGTCATGCCAAGATCAGAGC
TTACTATGGCCTTCTCTATAGACTTTAAGCTGGATTTGTCATATGGTTGA
ATCAATAGAGAACTTGAATCAGGGGTATTGATTTGAGCTATGCTCTTCAA
ACTTACTGGGCTTCCATAGTATTCCACCTCAATCTTATCTAGCATAGCTG
GATTCGATCTTCCTGTCCTCACGGAATTGAAATTGGTTCGGACCATATCG
ATAGTCCTTTCCATCCTAGCTTTAACATCCTTCTCAATGGAAGATTTTTC
CGCTTCAATTTCTTCAATAGTTGCACACCTCACAACTCCATTTCTCTTGT
GTGCCAGTTGTCTTACAACGATAGGTTTGTTGGATAATTTCACAAGTCTA
GAGTAGTTTGCAGCTGAGCTCTACTGGCGCACACTAACGCTGCTAG
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