CV712550

Overview
NameCV712550
Unique NameCV712550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_STRP7 (Ribosome-recycling factor OS=Streptococcus pneumoniae (strain 70585) GN=frr PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.369e-40
Identity = 81/165 (49.09%), Postives = 114/165 (69.09%), Query Frame = -3
Query:  179 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 673
            K RM ++   +   F  +R GR+N ++LD++ VEYYG    L  IA I  P++  LL+ P+DKSSLK IE+A+ +SDLG+TP NDG VIRL +P LT E R++L+K V K  E  KVAVRNIRRDA+   +K +K K+++ED +K L  D+QK+TD+ +K ID +
Sbjct:   10 KERMTQSHQSLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDM 174          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_STRP4 (Ribosome-recycling factor OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=frr PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.369e-40
Identity = 81/165 (49.09%), Postives = 114/165 (69.09%), Query Frame = -3
Query:  179 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 673
            K RM ++   +   F  +R GR+N ++LD++ VEYYG    L  IA I  P++  LL+ P+DKSSLK IE+A+ +SDLG+TP NDG VIRL +P LT E R++L+K V K  E  KVAVRNIRRDA+   +K +K K+++ED +K L  D+QK+TD+ +K ID +
Sbjct:   10 KERMTQSHQSLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDM 174          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_FUSNN (Ribosome-recycling factor OS=Fusobacterium nucleatum subsp. nucleatum GN=frr PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.369e-40
Identity = 79/169 (46.75%), Postives = 124/169 (73.37%), Query Frame = -3
Query:  179 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKK--LSEDNVKDLSSDLQKLTDEYMKKIDSI 679
            + + +M +TI+ V+  F ++R GR+N +MLD I+VE YGS V L  I  ++ P++  L+I P+DK+ +  IEKAI+++++GMTPNNDG VIRL LP+LT++RRKE  K+   +AE GK+A+RNIR+D     +KL+K+K+  +SED +K   +++Q LTD+Y+K+ID +
Sbjct:   11 ECEEKMVKTIEAVKEKFTAIRAGRANVSMLDGIKVENYGSEVPLNQIGTVSAPEARLLVIDPWDKTLISKIEKAILAANIGMTPNNDGRVIRLVLPELTADRRKEYVKLAKNEAENGKIAIRNIRKDINNHLKKLEKDKENPISEDELKKEETNVQTLTDKYVKEIDDL 179          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_FINM2 (Ribosome-recycling factor OS=Finegoldia magna (strain ATCC 29328) GN=frr PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.369e-40
Identity = 79/167 (47.31%), Postives = 120/167 (71.86%), Query Frame = -3
Query:  179 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 679
            D++ + ++T+  ++    +VR GR+NP++LD I VEYYG+   LK +A I+ P++  L IQP+DKS +K IEK I +S+LG+TP+NDG +IRL  PQLT +RRKEL+KVV +  E+ KV +R+IRRD +   +K++K  ++SED +  L  D+Q LTD+  K+ID+I
Sbjct:    8 DMETKADKTLHALKEELKTVRAGRANPSILDNIMVEYYGTSTPLKQVATISAPEARLLTIQPWDKSIMKEIEKQIQASNLGITPSNDGTIIRLPFPQLTEDRRKELTKVVKEYGEKSKVTIRSIRRDFVDDAKKMEKNAEISEDELHVLLDDIQSLTDKLTKEIDNI 174          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_CLONN (Ribosome-recycling factor OS=Clostridium novyi (strain NT) GN=frr PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.369e-40
Identity = 76/163 (46.63%), Postives = 119/163 (73.01%), Query Frame = -3
Query:  179 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 667
            +M ++I +++ +  S++ G++NPAMLD++ VEYYGS   +  +A +++P+   LLIQP+DK+SLK IEKAI+ SDLG+ P+NDG VIRL +P+LT E RK++ K V K  EE K+A+R+IRR+     + L+K   ++ED  K+  S +QK+TD+Y+ +ID+I
Sbjct:   12 KMLKSISVLKKDLGSMKAGKANPAMLDRVNVEYYGSETPINQLANVSSPEPRVLLIQPWDKNSLKDIEKAILQSDLGLNPSNDGSVIRLIIPELTEETRKDIVKKVKKIGEESKIAIRSIRREGNDKIKNLKKNNDITEDEAKEGESSVQKITDKYITEIDNI 174          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_ACIC1 (Ribosome-recycling factor OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=frr PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.369e-40
Identity = 78/169 (46.15%), Postives = 116/169 (68.64%), Query Frame = -3
Query:  173 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 679
            + + +ME+  ++ R NF ++RTGR+NPA+  KI VEYYG+P  L  +A     D+  ++I PYDK SL++IEKAI  SDLG+ P +DG VIR+ +P LT ERR++  K+   +AEE +VA+RNIRR A  A +KLQK+ ++ ED+V+    +L +LT +Y+  ID + K
Sbjct:    8 EAEEKMEKATNVARENFAAIRTGRANPALFSKITVEYYGTPTPLNQLASFTVADARLIVIHPYDKGSLRAIEKAIRDSDLGVNPTDDGSVIRVAIPPLTEERRRDYIKMARHEAEEARVAIRNIRRHAKDALDKLQKDGEVGEDDVRRAEKELDELTHKYVAHIDEMLK 176          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_SHESH (Ribosome-recycling factor OS=Shewanella sediminis (strain HAW-EB3) GN=frr PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.094e-40
Identity = 78/167 (46.71%), Postives = 117/167 (70.06%), Query Frame = -3
Query:  179 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 679
            D K+RME+ ++  +T    VRTGR++P++LD I+V YYGS   LK +  ++  DS +L +  +D + ++++EKAI+SSDLG+ P + G  IR+ LP LT ERRK+L KVV  +AE G++AVRN+RRDA    + L+KEK+ +ED+V+    D+QK TD ++K ID I
Sbjct:    8 DAKSRMEKCVESTKTQMAKVRTGRAHPSLLDTIKVSYYGSMTPLKQVGNVSIEDSRTLAVNVFDSTMIQAVEKAIMSSDLGLNPMSAGATIRIPLPALTEERRKDLIKVVRAEAENGRIAVRNVRRDANSDVKSLEKEKECTEDDVRRTEDDVQKFTDAHIKLIDEI 174          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_PROAC (Ribosome-recycling factor OS=Propionibacterium acnes GN=frr PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.094e-40
Identity = 76/169 (44.97%), Postives = 117/169 (69.23%), Query Frame = -3
Query:  173 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 679
            D + +M   +D  R  F ++RTGR+NPAM +K+ VEYYG+P  L+ +A    P++ ++LI P+DKS +  +EKAI  SDLG+ P+NDG V+R  LP LT ERRKE  K+   +AEEG++AVRN+RR +    +K +K+K++SED +  L  +L ++T +Y+++ID + K
Sbjct:    7 DAEKKMGSAVDHAREEFAAIRTGRANPAMFNKLMVEYYGTPTPLQQLASFQVPEARTVLIAPFDKSCVNDVEKAIRDSDLGVNPSNDGNVVRCVLPALTEERRKEYIKMAKTKAEEGRIAVRNVRRASNDVVKKQEKDKEISEDEMTRLEKELDQVTRKYVEQIDELLK 175          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_HAES2 (Ribosome-recycling factor OS=Haemophilus somnus (strain 2336) GN=frr PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.094e-40
Identity = 73/167 (43.71%), Postives = 121/167 (72.46%), Query Frame = -3
Query:  179 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 679
            D + RME++++ +RT+   +RTGR+ P++LD I+VEYYGSP  L+ +A +   D+ +L +  +D+S + ++EKAI++SDLG+ P++ G  IR+ LP LT ERR++L K+V  + E+GK+A+RN+RRDA    + L K+K++SED  +    ++QK+TD ++KK+D I
Sbjct:    8 DTQQRMEKSLETLRTHIAKIRTGRAQPSLLDGIQVEYYGSPTPLRQLANVVAEDARTLAVTVFDRSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKGEGEQGKIAIRNVRRDANDQIKALLKDKEISEDEERKAQDEIQKITDTFVKKVDEI 174          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_HAES1 (Ribosome-recycling factor OS=Haemophilus somnus (strain 129Pt) GN=frr PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.094e-40
Identity = 73/167 (43.71%), Postives = 121/167 (72.46%), Query Frame = -3
Query:  179 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 679
            D + RME++++ +RT+   +RTGR+ P++LD I+VEYYGSP  L+ +A +   D+ +L +  +D+S + ++EKAI++SDLG+ P++ G  IR+ LP LT ERR++L K+V  + E+GK+A+RN+RRDA    + L K+K++SED  +    ++QK+TD ++KK+D I
Sbjct:    8 DTQQRMEKSLETLRTHIAKIRTGRAQPSLLDGIQVEYYGSPTPLRQLANVVAEDARTLAVTVFDRSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKGEGEQGKIAIRNVRRDANDQIKALLKDKEISEDEERKAQDEIQKITDTFVKKVDEI 174          
The following BLAST results are available for this feature:
BLAST of CV712550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_STRP72.369e-4049.09Ribosome-recycling factor OS=Streptococcus pneumon... [more]
RRF_STRP42.369e-4049.09Ribosome-recycling factor OS=Streptococcus pneumon... [more]
RRF_FUSNN2.369e-4046.75Ribosome-recycling factor OS=Fusobacterium nucleat... [more]
RRF_FINM22.369e-4047.31Ribosome-recycling factor OS=Finegoldia magna (str... [more]
RRF_CLONN2.369e-4046.63Ribosome-recycling factor OS=Clostridium novyi (st... [more]
RRF_ACIC12.369e-4046.15Ribosome-recycling factor OS=Acidothermus cellulol... [more]
RRF_SHESH3.094e-4046.71Ribosome-recycling factor OS=Shewanella sediminis ... [more]
RRF_PROAC3.094e-4044.97Ribosome-recycling factor OS=Propionibacterium acn... [more]
RRF_HAES23.094e-4043.71Ribosome-recycling factor OS=Haemophilus somnus (s... [more]
RRF_HAES13.094e-4043.71Ribosome-recycling factor OS=Haemophilus somnus (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I21_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712550 ID=CV712550; Name=CV712550; organism=Citrus sinensis; type=EST; length=846bp
CCCCCTTTTTTTCTAACAAAATATCCACCCGGTGTCTCCCATTAGTATCA
AAAAATGCCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTCTGAGA
TTCACTAGAGAGCTCACCATTACATTTGTGTGTAAACAATCATTAAACCT
TCAACAACTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCTTCATA
TACTCATCTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACATTGTC
TTCAGAGAGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAACGCAT
CTCTTCTTATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTTTGGCC
ACAACCTTTGACAGTTCCTTCCTCCTTTCGGATGTCAATTGAGGAAGGGT
TAACCGTATGACTTCACCATCATTGTTTGGGGTCATGCCAAGATCAGAGC
TTACTATGGCCTTCTCTATAGACTTTAAGCTGGATTTGTCATATGGTTGA
ATCAATAGAGAACTTGAATCAGGGGTATTGATTTGAGCTATGCTCTTCAA
ACTTACTGGGCTTCCATAGTATTCCACCTCAATCTTATCTAGCATAGCTG
GATTCGATCTTCCTGTCCTCACGGAATTGAAATTGGTTCGGACCATATCG
ATAGTCCTTTCCATCCTAGCTTTAACATCCTTCTCAATGGAAGATTTTTC
CGCTTCAATTTCTTCAATAGTTGCACACCTCACAACTCCATTTCTCTTGT
GTGCCAGTTGTCTTACAACGATAGGTTTGTTGGATAATTTCACAAGTCTA
GAGTAGTTTGCAGCTGAGCTCTACTGGCGCACACTAACGCTGCTAG
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