CV712550

Overview
NameCV712550
Unique NameCV712550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_THET8 (Ribosome-recycling factor OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=frr PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.041e-40
Identity = 76/167 (45.51%), Postives = 121/167 (72.46%), Query Frame = -3
Query:  179 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 679
            + ++ M+++++++  N   +RTGR+NPA+L  ++VEYYG+ V L  IA +  PD  +L++Q +D+++LK+IEKAI  SDLG+ P+N G+ + + +P LT ERRK+L + V + AEEG+VA+RNIRR+AL   +KL KE  LSED  K   +++QK+TDE++ K D +
Sbjct:    9 ETRSHMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVVQSWDQNALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQL 175          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_THET2 (Ribosome-recycling factor OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=frr PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.041e-40
Identity = 76/167 (45.51%), Postives = 121/167 (72.46%), Query Frame = -3
Query:  179 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 679
            + ++ M+++++++  N   +RTGR+NPA+L  ++VEYYG+ V L  IA +  PD  +L++Q +D+++LK+IEKAI  SDLG+ P+N G+ + + +P LT ERRK+L + V + AEEG+VA+RNIRR+AL   +KL KE  LSED  K   +++QK+TDE++ K D +
Sbjct:    9 ETRSHMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVVQSWDQNALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQL 175          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_STRPS (Ribosome-recycling factor OS=Streptococcus pneumoniae (strain CGSP14) GN=frr PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.041e-40
Identity = 80/165 (48.48%), Postives = 114/165 (69.09%), Query Frame = -3
Query:  179 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 673
            K RM ++   +   F  +R GR+N ++LD++ VEYYG    L  IA I  P++  LL+ P+DKSSLK IE+A+ +SD+G+TP NDG VIRL +P LT E R++L+K V K  E  KVAVRNIRRDA+   +K +K K+++ED +K L  D+QK+TD+ +K ID +
Sbjct:   10 KERMTQSHQSLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDIERALNASDIGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDEAKKREKAKEITEDELKTLEKDIQKVTDDAVKHIDDM 174          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_STRPN (Ribosome-recycling factor OS=Streptococcus pneumoniae GN=frr PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.041e-40
Identity = 80/165 (48.48%), Postives = 114/165 (69.09%), Query Frame = -3
Query:  179 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 673
            K RM ++   +   F  +R GR+N ++LD++ VEYYG    L  IA I  P++  LL+ P+DKSSLK IE+A+ +SD+G+TP NDG VIRL +P LT E R++L+K V K  E  KVAVRNIRRDA+   +K +K K+++ED +K L  D+QK+TD+ +K ID +
Sbjct:   10 KERMTQSHQSLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDIERALNASDIGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDEAKKREKAKEITEDELKTLEKDIQKVTDDAVKHIDDM 174          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_LACLS (Ribosome-recycling factor OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=frr PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.041e-40
Identity = 75/163 (46.01%), Postives = 118/163 (72.39%), Query Frame = -3
Query:  179 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 667
            RM+ ++  ++ +   +R GR+N ++LD+++V YYG+P  L  +A I  P++  L++ P+DKS LK IEK++  SDLG+TP NDG VIRL +P LT ERR+EL K + K  E  KVA+RNIRRDA+   +K +K K+++ED++KDL +++QK+TD+ +K+ D +
Sbjct:   12 RMKHSLASLQRDLGHLRAGRANASLLDRVQVVYYGAPTPLNQLASITIPEARVLMVTPFDKSILKDIEKSLYESDLGITPANDGSVIRLVIPMLTEERRRELVKEMGKYIESAKVAIRNIRRDAMDTAKKSEKAKEITEDDLKDLENEIQKVTDDAVKEADRL 174          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_LACH4 (Ribosome-recycling factor OS=Lactobacillus helveticus (strain DPC 4571) GN=frr PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.041e-40
Identity = 77/162 (47.53%), Postives = 118/162 (72.84%), Query Frame = -3
Query:  179 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 664
            M+++I + +    S+R G +N A+LD ++VEYYG+P  L  ++ I  P+   LLI PYD++SL  IE A+++S+LG+TP NDG+VIRL +PQLT ERR+E++K V K AE+ K+AVRN+RR+A+ A +K QK+  ++ED  ++L   +QK+TD+  KKID +
Sbjct:   13 MDKSIKVYQKRLASIRAGVANAALLDNVQVEYYGAPTPLTQMSSITIPEPRVLLITPYDQNSLDDIEHALLASNLGLTPANDGKVIRLVIPQLTGERREEIAKEVGKYAEDAKIAVRNVRREAMDALKKEQKDGNITEDEQRNLEKQVQKITDDSTKKIDQL 174          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_CLOBA (Ribosome-recycling factor OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=frr PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.041e-40
Identity = 79/167 (47.31%), Postives = 118/167 (70.66%), Query Frame = -3
Query:  179 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 679
            + + +M++T+ ++++   +++ GR+NP+MLDKI+++YYGS   L   A I++P+   L+I P++K  LK IEKAI+ SDLG+ P+NDG +IRL +P+LT E RK+L K V K  EE KVA+R+IRRDA    + L+K+  LSED VK    D+QK TD  +K+ID I
Sbjct:    8 NAEEKMQKTVTVLKSELGTMKAGRANPSMLDKIQIDYYGSMCPLSQAANISSPEPRVLMITPWEKQLLKEIEKAILKSDLGLNPSNDGSIIRLVIPELTEETRKDLVKKVKKTGEESKVAIRSIRRDANDKIKALKKDGDLSEDQVKKGEDDVQKKTDAIIKEIDKI 174          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_STRZP (Ribosome-recycling factor OS=Streptococcus pneumoniae (strain P1031) GN=frr PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 5.278e-40
Identity = 82/165 (49.70%), Postives = 113/165 (68.48%), Query Frame = -3
Query:  179 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 673
            K RM ++   +   F  +R GR+N ++LD+I VEYYG    L  IA I  P++  LL+ P+DKSSLK IE+A+ +SDLG TP NDG VIRL +P LT E R++L+K V K  E  KVAVRNIRRDA+   +K +K K+++ED +K L  D+QK+TD+ +K ID +
Sbjct:   10 KERMTQSHQSLAREFGGIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDIERALNASDLGNTPANDGSVIRLVVPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDM 174          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_STRR6 (Ribosome-recycling factor OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=frr PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 5.278e-40
Identity = 80/165 (48.48%), Postives = 114/165 (69.09%), Query Frame = -3
Query:  179 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 673
            K RM ++   +   F  +R GR+N ++LD++ VEYYG    L  IA I  P++  LL+ P+DKSSLK I++A+ +SDLG+TP NDG VIRL +P LT E R++L+K V K  E  KVAVRNIRRDA+   +K +K K+++ED +K L  D+QK+TD+ +K ID +
Sbjct:   10 KERMTQSHQSLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDIDRALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDM 174          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_STRP2 (Ribosome-recycling factor OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=frr PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 5.278e-40
Identity = 80/165 (48.48%), Postives = 114/165 (69.09%), Query Frame = -3
Query:  179 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 673
            K RM ++   +   F  +R GR+N ++LD++ VEYYG    L  IA I  P++  LL+ P+DKSSLK I++A+ +SDLG+TP NDG VIRL +P LT E R++L+K V K  E  KVAVRNIRRDA+   +K +K K+++ED +K L  D+QK+TD+ +K ID +
Sbjct:   10 KERMTQSHQSLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDIDRALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDM 174          
The following BLAST results are available for this feature:
BLAST of CV712550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_THET84.041e-4045.51Ribosome-recycling factor OS=Thermus thermophilus ... [more]
RRF_THET24.041e-4045.51Ribosome-recycling factor OS=Thermus thermophilus ... [more]
RRF_STRPS4.041e-4048.48Ribosome-recycling factor OS=Streptococcus pneumon... [more]
RRF_STRPN4.041e-4048.48Ribosome-recycling factor OS=Streptococcus pneumon... [more]
RRF_LACLS4.041e-4046.01Ribosome-recycling factor OS=Lactococcus lactis su... [more]
RRF_LACH44.041e-4047.53Ribosome-recycling factor OS=Lactobacillus helveti... [more]
RRF_CLOBA4.041e-4047.31Ribosome-recycling factor OS=Clostridium botulinum... [more]
RRF_STRZP5.278e-4049.70Ribosome-recycling factor OS=Streptococcus pneumon... [more]
RRF_STRR65.278e-4048.48Ribosome-recycling factor OS=Streptococcus pneumon... [more]
RRF_STRP25.278e-4048.48Ribosome-recycling factor OS=Streptococcus pneumon... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I21_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712550 ID=CV712550; Name=CV712550; organism=Citrus sinensis; type=EST; length=846bp
CCCCCTTTTTTTCTAACAAAATATCCACCCGGTGTCTCCCATTAGTATCA
AAAAATGCCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTCTGAGA
TTCACTAGAGAGCTCACCATTACATTTGTGTGTAAACAATCATTAAACCT
TCAACAACTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCTTCATA
TACTCATCTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACATTGTC
TTCAGAGAGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAACGCAT
CTCTTCTTATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTTTGGCC
ACAACCTTTGACAGTTCCTTCCTCCTTTCGGATGTCAATTGAGGAAGGGT
TAACCGTATGACTTCACCATCATTGTTTGGGGTCATGCCAAGATCAGAGC
TTACTATGGCCTTCTCTATAGACTTTAAGCTGGATTTGTCATATGGTTGA
ATCAATAGAGAACTTGAATCAGGGGTATTGATTTGAGCTATGCTCTTCAA
ACTTACTGGGCTTCCATAGTATTCCACCTCAATCTTATCTAGCATAGCTG
GATTCGATCTTCCTGTCCTCACGGAATTGAAATTGGTTCGGACCATATCG
ATAGTCCTTTCCATCCTAGCTTTAACATCCTTCTCAATGGAAGATTTTTC
CGCTTCAATTTCTTCAATAGTTGCACACCTCACAACTCCATTTCTCTTGT
GTGCCAGTTGTCTTACAACGATAGGTTTGTTGGATAATTTCACAAGTCTA
GAGTAGTTTGCAGCTGAGCTCTACTGGCGCACACTAACGCTGCTAG
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