CV712522

Overview
NameCV712522
Unique NameCV712522
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712522 vs. ExPASy Swiss-Prot
Match: NUON_RICCN (NADH-quinone oxidoreductase subunit N OS=Rickettsia conorii GN=nuoN PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.167e-11
Identity = 52/228 (22.81%), Postives = 109/228 (47.81%), Query Frame = -2
Query:   36 KLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMG-AYGLIRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALF----FLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKL 704
            KL  +P H W+PD + E    T +       K+G    L+ I+  ++ + + I      I+  + +++ A  +  Q +LK+ +AYS++ ++G++++G+      G   A+L ++ + + S   F     L G   D+  F  +    G+A     I  + SI+  + + +P ++GF  +  +F+  I  ++F L    + T V+A        Y L +++ M++  K+
Sbjct:  210 KLSSVPLHFWVPDVY-EGSPITSVTYFNAASKIGMVIVLLNISKLIIGNYYPINYNLIKIIAILSMLFGAFGAIRQTSLKRLMAYSTILNIGYVLIGVLLHNQEGYKAALLYMLIYAVGSIGFFTCLIILLGKDVDKASFKTIQ---GIAEYHKTIAAVISIVMFSMIGIPPLTGFFGKYYLFYQAINQEEFALAYCGIFTSVVA------AFYYLKVVKAMYFSKKI 427          
BLAST of CV712522 vs. ExPASy Swiss-Prot
Match: NUON_BORA1 (NADH-quinone oxidoreductase subunit N OS=Bordetella avium (strain 197N) GN=nuoN PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.167e-11
Identity = 53/232 (22.84%), Postives = 108/232 (46.55%), Query Frame = -2
Query:   48 KLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGL-IRINMELLPHAHSIFSPW---FMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGS--------ITDTGLNGAVLQIISHGLISAALF-FLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFY 704
            KL  +PFH W+PD +  +  +  ++L G   K+ A+ + +R+   L+   H + + W    MI+  + +     T+  Q N K+ +AYS++SHMGF++LG+ S                ++  +I++ L + A F  +   S        +D++ GL    P    +  +L  +   +P + GF A+L +   +I S        + +  V  +  ++   Y L +++ +++
Sbjct:  222 KLGAVPFHMWVPDVYQGSPTAVTLILGGAP-KLAAFAMTLRL---LVDGLHGLAADWQSMLMILAVLSLAIGNLTAIVQTNFKRMLAYSTISHMGFVLLGLASGVVVGKAEAASAAYGASLFYMITYVLTTLASFGIVLLLSRQGFECEQIDDLKGLNRRSPWHALIVLLLMFSLAGIPPLVGFYAKLAILQAVIES------GHVALAVVAVLFSLIGAFYYLRVVKVVYF 443          
BLAST of CV712522 vs. ExPASy Swiss-Prot
Match: NU5M_ALLMA (NADH-ubiquinone oxidoreductase chain 5 OS=Allomyces macrogynus GN=ND5 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.167e-11
Identity = 56/216 (25.93%), Postives = 104/216 (48.15%), Query Frame = -2
Query:   45 HTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRIN--MELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAY-LDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYG 683
            HTWLP         + ++ A  L+  G Y ++R +   EL P +         ++G++  I+AA+T   Q +LK+ IAYS+ S +G+++  +G    +    A   + +H    A LF  AG+    +     + +MGGL   +P  +T+  I S++ +ALP ++G+ ++  +   +  +   FL+      ++  I   +T  YS   L   F+G
Sbjct:  232 HTWLPSAMEGPTPVSALIHAATLVTAGVYLILRSSPLFELAPTSLICVC----VIGSLTAIFAATTGLFQNDLKRVIAYSTCSQLGYMVFALGL---SQYEVAFFHLFNHAYFKALLFLSAGSIIHALHDEQDMRKMGGLVNILPFTYTMILIGSLSLMALPFLTGYYSKDAI---LEVAYGQFLVTGTFTYWLGTITATITAFYSSKALILGFFG 437          
BLAST of CV712522 vs. ExPASy Swiss-Prot
Match: MRPA_BACSU (Na(+)/H(+) antiporter subunit A OS=Bacillus subtilis GN=mrpA PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.167e-11
Identity = 57/233 (24.46%), Postives = 102/233 (43.78%), Query Frame = -2
Query:   45 PFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIV---GTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFII--LGIGSIT---------DTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMP----KIVITFVMAIGMILTPIYSLSMLRQMFYG 689
            PF+ WLPD        +  L +  ++K G Y + R +        +  + WF IV   G   +++ +  +  Q +LK  +A+S+VS +G II  LG+ +                 A+  +I+H     +LF   G          + ++GGL   +P  FT+  I + +   LP  +GF+++ + F  ++    F L       ++      IG + T IYS+ +L + F G
Sbjct:  228 PFYIWLPDAMEAPTPVSAYLHSATMVKAGIYVIARFSP-----IFAFSAQWFWIVSLVGLFTMVWGSFHAVKQTDLKSILAFSTVSQLGMIISMLGVSAAALHYGHTEYYTVAAMAAIFHLINHATFKGSLFMAVGIIDHETGTRDIRKLGGLMAIMPITFTISLIGTFSMAGLPPFNGFLSKEMFFTSMLRVTHFDLFNVQTWGVLFPLFAWIGSVFTFIYSMKLLFKTFRG 455          
BLAST of CV712522 vs. ExPASy Swiss-Prot
Match: NUON_SPHAL (NADH-quinone oxidoreductase subunit N OS=Sphingopyxis alaskensis GN=nuoN PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.525e-11
Identity = 50/225 (22.22%), Postives = 107/225 (47.56%), Query Frame = -2
Query:   39 KLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLI-RINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDR--IRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYK 704
            K+  +PFH W PD +  A        A    K+ A  L+ RI ++ +  A   +    + +    II  A  + GQ+N+K+ +AYSS++++GF+++G+ + T  G+ G +  ++ + + +   F +     D    +   +  + GL+   P +    S+   +   +P + GF  + +VF   + +    L+P  V   V +   ++   Y +++++ M++  K
Sbjct:  212 KISAVPFHMWTPDVYEGAPTPVTTFFASAP-KVAAMALMARIVIDAMGPAVGAWQQIVIFLALASIILGAVGAIGQKNIKRLLAYSSINNVGFMLIGLAAGTQQGVEGVLTYLLVYLVTTLGAFLVVLQLRDEGGNQVESIPALAGLSQRRPGLAAAMSVFLFSLAGIPPLFGFWPKYLVFEAAVNAN---LVPLAVAGIVAS---VIGAFYYIAIIKTMYFDDK 429          
BLAST of CV712522 vs. ExPASy Swiss-Prot
Match: NUON_MAGSA (NADH-quinone oxidoreductase subunit N OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=nuoN PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.525e-11
Identity = 48/223 (21.52%), Postives = 107/223 (47.98%), Query Frame = -2
Query:   48 KLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIVGTVQI---IYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAY-LDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFY 704
            K+  +PFH W PD +  A        A +  K+ A  L+ + +   P A  +   W  +V  + I      +  +  Q N+K+ +AYSS+ H+GF+++GI + +  G+ G ++ +  +  ++   F +  +   + R    +D++ GL+   P +  + ++L  +   +P ++GF  +  VF   I S  +       ++ +  +  +++  Y L +++ M++
Sbjct:  222 KVSAVPFHMWAPDVYEGAPTPVTSFFA-VAPKIAALCLL-VRVMTGPFA-DLVEQWRQVVTFIAIGSMFVGSFAAVVQTNIKRLMAYSSIGHVGFVLVGIAAGSTLGIQGVLIYLAIYLFMNVGAFAVILSMRQKGRMVEGIDDLAGLSKTHPMMAFVMAVLMFSMAGVPPLAGFWGKFYVFMAAIESGLY------TLSILGVLSSVVSTYYYLRIVKVMYF 435          
BLAST of CV712522 vs. ExPASy Swiss-Prot
Match: NUON_COXBU (NADH-quinone oxidoreductase subunit N OS=Coxiella burnetii GN=nuoN PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.525e-11
Identity = 48/184 (26.09%), Postives = 90/184 (48.91%), Query Frame = -2
Query:  159 KLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLI-RINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALF-FLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGII 704
            KL   PFH W+PD + E   S+  L      K+ AY +I R+ +  +P  H  +    ++V  + +      +  Q N+K+ +AYSS++HMG+++LG+   T  G   A+   I++ L+S   F  +   S        +++  GL    P +  +  ++  +   +P + GF+A++ V   +I
Sbjct:  224 KLGTAPFHMWVPDVY-EGAPSSVTLFISTAPKIAAYAMIIRLLILGMPALHVQWHQMLIVVAILSMGIGNFAAIVQSNIKRMLAYSSIAHMGYMLLGVLCGTRNGYAAAMFYTITYSLMSLGAFGMVVLMSRGGFEAENINDFAGLNSRNPWLAFMMMLILFSLAGVPPLVGFIAKVGVLDALI 406          
BLAST of CV712522 vs. ExPASy Swiss-Prot
Match: NUON1_AQUAE (NADH-quinone oxidoreductase subunit N 1 OS=Aquifex aeolicus GN=nuoN1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.525e-11
Identity = 47/223 (21.08%), Postives = 105/223 (47.09%), Query Frame = -2
Query:   51 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPW---FMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFA-YLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMF 707
            +K+  +PFH W PD +  A   T   L+ +  K+G Y L    ++L  +  S F  W    M++  + + Y    +  Q+++K+ +AYSS++H G+ +  + ++     +  +  +  + L +   F +      +  +  +  +  GL    P + ++ ++   A + +P  + F+ +L +FFG++ +  F       +  + AI  +++  Y L ++  MF
Sbjct:  205 LKVSAVPFHFWTPDAYEGAPTPTTAYLSTVP-KIGMYFLF---VKLTMYLFSAFPDWKYVVMLLAVLSMFYGNIVAYAQKSVKRLLAYSSIAHAGYFLTALTAVDKHLFSALLFYVFVYALATVGAFTVLAILEKKEGWTHHFLDFKGLKEENPVLASMLALFLFALIGIPPAAVFLGKLGIFFGLVKTDMF------ALGILFAIASLISAGYYLKVIVYMF 417          
BLAST of CV712522 vs. ExPASy Swiss-Prot
Match: NUON1_ACICJ (NADH-quinone oxidoreductase subunit N 1 OS=Acidiphilium cryptum (strain JF-5) GN=nuoN1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.525e-11
Identity = 55/226 (24.34%), Postives = 108/226 (47.79%), Query Frame = -2
Query:   48 KLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPG------QRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALF-FLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFY 704
            K+   PFH W PD +  A  S     A    K+  + L+ + + L P    +   W  +V   QII AAS   G      Q ++K+ + YSS+ HMG+ ++G+ + T  G++GA++ +  + ++S   F  +   S  R     + ++ G+A   P+   + +++  +   +P ++GF  +  VF   I +    L P  V+  + +   ++   Y L +++ M++
Sbjct:  213 KISAAPFHMWTPDVYEGAPTSVTAFFA-TAPKIAVFALL-LRVMLGPFG-PVLGQWRDLV---QIIAAASMVIGAIGAIRQTSIKRLMGYSSIGHMGYALMGLAAGTAAGVSGALIYLAIYLVMSLGTFGCIIAMSRGRQPVERIADLAGMASDDPRFAFVLAVMMWSMAGIPPLAGFFGKFYVFAAAINAG---LGPLAVLGIITS---VIAAFYYLRVIKVMYF 426          
BLAST of CV712522 vs. ExPASy Swiss-Prot
Match: NUOL_CAMJE (NADH-quinone oxidoreductase subunit L OS=Campylobacter jejuni GN=nuoL PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.525e-11
Identity = 61/219 (27.85%), Postives = 103/219 (47.03%), Query Frame = -2
Query:   48 PFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINM--ELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNG-AVLQIISHGLISAALFFLAGTSYDRIRFAY-LDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVA-ELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFY 689
            PFHTWL D        + ++ A  ++  G Y +IR +   +L+P    I +    ++G    I+AAS +   R+LK+ IAYS++S +G++ +  G     G  G A+  + +H    + LF  AG     +     + +MGGL  P+     L  I S+A   +   +GF + +LI+ +  I+           I  V+ I   LT  YS  +L  +F+
Sbjct:  223 PFHTWLADAMAGPTPVSALIHAATMVTAGVYLVIRASTLYDLVPEVSYIIA----LLGAFVAIFAASMALVVRDLKRIIAYSTLSQLGYMFVAAG----LGAYGIALFHLATHAFFKSLLFLGAGNVMHAMNDKLDIKKMGGLFKPLKITAILMCIGSLALAGIYPFAGFFSKDLILGYSFISFHH-------GIFLVLLIAAFLTAFYSFRLLMLVFF 426          
The following BLAST results are available for this feature:
BLAST of CV712522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 487
Match NameE-valueIdentityDescription
NUON_RICCN1.167e-1122.81NADH-quinone oxidoreductase subunit N OS=Rickettsi... [more]
NUON_BORA11.167e-1122.84NADH-quinone oxidoreductase subunit N OS=Bordetell... [more]
NU5M_ALLMA1.167e-1125.93NADH-ubiquinone oxidoreductase chain 5 OS=Allomyce... [more]
MRPA_BACSU1.167e-1124.46Na(+)/H(+) antiporter subunit A OS=Bacillus subtil... [more]
NUON_SPHAL1.525e-1122.22NADH-quinone oxidoreductase subunit N OS=Sphingopy... [more]
NUON_MAGSA1.525e-1121.52NADH-quinone oxidoreductase subunit N OS=Magnetosp... [more]
NUON_COXBU1.525e-1126.09NADH-quinone oxidoreductase subunit N OS=Coxiella ... [more]
NUON1_AQUAE1.525e-1121.08NADH-quinone oxidoreductase subunit N 1 OS=Aquifex... [more]
NUON1_ACICJ1.525e-1124.34NADH-quinone oxidoreductase subunit N 1 OS=Acidiph... [more]
NUOL_CAMJE1.525e-1127.85NADH-quinone oxidoreductase subunit L OS=Campyloba... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I03_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712522 ID=CV712522; Name=CV712522; organism=Citrus sinensis; type=EST; length=768bp
CCAGAATCAAAAAAATAAGAGTTTGGGGCATTAAATAGCTTGTACCCATA
GAACATTTGCCGTAACATAGATAATGAATAAATAGGAGTTAATATCATTC
CAATTGCCATTACAAAAGTGATTACTATTTTTGGCATTAAAAAAAATTTT
TGGCTGGTAATTATTCCAAAAAATACTATCAATTCTGCAACAAAACCACT
CATGCCGGGTAATGCAAGGGAGGCCATCGATAAGATACTGAATAGCGTGA
AGATCTTTGGAATTGGTATAGCTAGTCCGCCCATTTCGTCTAGATAAGCA
AAACGTATTCTATCATAACTCGTTCCTGCCAAGAAAAAAAGTGCAGCACT
AATCAACCCATGAGAAATTATTTGTAAAACGGCTCCATTGAGACCTGTAT
CGGTTATCGAGCCTATTCCTAGAATTATGAAACCCATATGAGATACAGAG
GAATAGGCTATTCTTTTTTTTAAATTCCGTTGGCCGGGAGATGTTGAAGC
TGCATAAATTATTTGCACGGTACCTACTATCATGAACCAGGGGGAAAATA
TAGAATGAGCGTGCGGTAATAGTTCCATATTGATTCGAATCAACCCATAT
GCTCCCATTTTTAATAAGATTCCGGCTAGAAGCATACAAGTACTGTAATG
TGCCTCTCCGTGGGTGTCTGGTAACCACGTATGAAAGGGTATAATTGGCA
ATTTGACAGCAAAAGCAATAAAAAATCCAATATAGAATATTATTTCCAGT
GCCACAGGATACGACCGA
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