CV712522

Overview
NameCV712522
Unique NameCV712522
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712522 vs. ExPASy Swiss-Prot
Match: NU5M_ACACA (NADH-ubiquinone oxidoreductase chain 5 OS=Acanthamoeba castellanii GN=ND5 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.794e-11
Identity = 58/231 (25.11%), Postives = 105/231 (45.45%), Query Frame = -2
Query:   15 HTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDE-----MGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVF---FGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSY 683
            HTWLPD        + ++ A  ++  G + LIR +  L   +  +F     ++G +  ++A +    Q ++KK IAYS+ S +G++    G    +  +  +  + +HG   A LF  AG+    +  A LDE     MGGL   +P  +    + S++    P ++GF ++ +V    F   +   FF      I ++      +T  YS+ ++  +F     F  PNS+
Sbjct:  240 HTWLPDAMEGPTPVSALIHAATMVTAGVFVLIRSSPILEYSSTGLFL--VSLIGGLTALFAGTVGLVQYDIKKVIAYSTCSQLGYMFFACGM---SNYSVGLFHLFNHGFFKALLFLGAGS----VIHALLDEQDMRKMGGLIKLMPLTYVAILVGSLSLTGFPFLTGFYSKEVVLEIAFSKFSINSFF------IYWLGVFAAFITSFYSIRLMYLVF-----FARPNSH 450          
BLAST of CV712522 vs. ExPASy Swiss-Prot
Match: NUON_HELMI (NADH-quinone oxidoreductase subunit N OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=nuoN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.567e-11
Identity = 50/204 (24.51%), Postives = 97/204 (47.55%), Query Frame = -2
Query:  102 KLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIVGT---VQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAI 704
            K+  +PFH W PD +  A       LA      G   L+R+ +E +P      + W  ++     V ++     +  Q N+K+ +AYSSV+  G++++G+ S    G+ G +   + + + +   F +A      I    + +  GL+   P + ++ +I  ++   +P ++GFV +L +F  I+   K  L P   + FVM++
Sbjct:  211 KISAVPFHMWSPDIYEGAPTPVTGFLAAASKAAGFAVLVRLFLEGMPLQGG--ADWLTVIAVLAGVTMVIGNVVAIPQTNIKRMLAYSSVAQAGYLLVGLMSTDAPGVKGILFYAMLYVVANMGAFAVATAVGRAIGSDEIADYAGLSQRQPLLASVMTISLLSLAGIPPLAGFVGKLYLFSAIM--DKGVLWPAF-LGFVMSM 409          
BLAST of CV712522 vs. ExPASy Swiss-Prot
Match: NUON_PARDP (NADH-quinone oxidoreductase subunit N OS=Paracoccus denitrificans (strain Pd 1222) GN=nuoN PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.883e-11
Identity = 52/222 (23.42%), Postives = 99/222 (44.59%), Query Frame = -2
Query:   45 KLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLI-RINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALF-FLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYG 704
            K+  +PFH W PD + E   +          K+ A  LI R+  +   H    +S     +  + +   +    GQ N+K+ +AYSS++HMGF ++G+ + T  G+   +L +  + +++   F F+     D +    L  +   A   P       +L  +   +P   GF A+    FG++T+     M  + +  V+A   ++   Y L ++  M++G
Sbjct:  217 KVSAVPFHMWTPDVY-EGSPTPVTAFFATAPKVAAMALIARLVFDAFGHVIGDWSQIVAALAVMSMFLGSIAGIGQTNIKRLMAYSSIAHMGFALVGLAAGTAIGVQNMLLYMTIYAVMNIGTFAFILSMERDGVPVTDLAALNRFAWTDPVKALAMLVLMFSLAGVPPTLGFFAK----FGVLTAAVDAGMGWLAVLGVIA--SVIGAFYYLRIVYYMYFG 431          
BLAST of CV712522 vs. ExPASy Swiss-Prot
Match: NUON_CUPTR (NADH-quinone oxidoreductase subunit N OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=nuoN PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.883e-11
Identity = 62/233 (26.61%), Postives = 109/233 (46.78%), Query Frame = -2
Query:   48 KLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGL-IRINME-LLPHAHSIFSPWFMIVGTVQIIYAAS---TSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLA--GT-------SYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFY 704
            KL   PFH W+PD +  +  +  +L+AG   K+ A+ L IR+ +E LLP A    S W M++  + II  A    T+  Q NLK+ +AYS++SHMGF++LG+ S              S  +  +  + L   GT       +        L+++ G++   P    L  ++  +   +P   GF A+L V   ++ +   +L        V  +  ++   Y L +++ M++
Sbjct:  220 KLGAAPFHMWIPDIYQGSPTAVTLLIAGGP-KVAAFALFIRVLVEGLLPLA----SDWQMMLVVLSIISLAIGNLTAIVQSNLKRMLAYSTISHMGFVLLGLLSGVVANKADGAADAYSSAMFYSVTYLLTTLGTFGIILLRTSKGFEAETLEDLKGMSRRNPWFAFLMLVMMFSLAGIPPTVGFYAKLAVLDAVVQAGMTWL------AVVAVLFSLIGAFYYLRIVKLMYF 441          
BLAST of CV712522 vs. ExPASy Swiss-Prot
Match: NUON2_ROSCS (NADH-quinone oxidoreductase subunit N 2 OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=nuoN2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.883e-11
Identity = 54/226 (23.89%), Postives = 96/226 (42.48%), Query Frame = -2
Query:   51 KLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGI-------GSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAY-LDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMF 704
            K+ + PFH W PD +  A      LL+      G   L+R  +E L     I++P   ++    +      +  QRN+K+ +AYSS+ H G+I+ G+       G     G+ G +L +I++   +   F +      R   A+ + ++ GL    P +    ++  ++   +P   GF  +  VF     S   +      IT +  I   +   Y L ++ QMF
Sbjct:  231 KVAMAPFHMWAPDVYEGAPTPIAGLLSVGSKAAGFAALLRFLVEALAGEWQIWAPVLAVLAIATLAVGNIGALTQRNVKRMLAYSSIGHAGYILFGVIAAGAPGGIAGQRGVEGVLLYLIAYTFTNLGAFGVLIALEHRGEAAWDMSDLAGLWSRRPWLAVAMAVCMLSLAGVPPTGGFWGKFYVFTAAWLSGMGW------ITVIGVIVAAIAAFYYLRIVAQMF 450          
BLAST of CV712522 vs. ExPASy Swiss-Prot
Match: NUON2_CHLT3 (NADH-quinone oxidoreductase subunit N 2 OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=nuoN2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.883e-11
Identity = 50/218 (22.94%), Postives = 95/218 (43.58%), Query Frame = -2
Query:   72 KLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHS----IFSPW---FMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSL 704
            K  ++PFH W PD +  A       L+      G   LIR     +P        +   W     +V  V ++     +  Q N+K+ +AYSS++H G+I+LG+    D G    +  + ++ +++   FF+     + I    +++  GL   +P      +I  ++   LP   GF+ +L++F  ++     F+         +A+  +LT + SL
Sbjct:  236 KAGVVPFHFWSPDVYEGAPTPITAYLSVGSKAAGFAMLIRFFRVTIPTGAGSTDLLAFDWVTLLSVVSVVSMVLGNVVALWQSNVKRLLAYSSIAHAGYILLGVIVADDLGTQATLFYLAAYTIMNIGAFFVIILISNEIGSDDVNDYKGLGKKMPLAAASLTIFLVSLTGLPPTVGFIGKLMIFSALLAKGPVFVW--------LAVIGVLTSVVSL 445          
BLAST of CV712522 vs. ExPASy Swiss-Prot
Match: NQO14_PARDE (NADH-quinone oxidoreductase subunit 14 OS=Paracoccus denitrificans GN=nqo14 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.883e-11
Identity = 52/222 (23.42%), Postives = 99/222 (44.59%), Query Frame = -2
Query:   45 KLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLI-RINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALF-FLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYG 704
            K+  +PFH W PD + E   +          K+ A  LI R+  +   H    +S     +  + +   +    GQ N+K+ +AYSS++HMGF ++G+ + T  G+   +L +  + +++   F F+     D +    L  +   A   P       +L  +   +P   GF A+    FG++T+     M  + +  V+A   ++   Y L ++  M++G
Sbjct:  217 KVSAVPFHMWTPDVY-EGSPTPVTAFFATAPKVAAMALIARLVFDAFGHVIGDWSQIVAALAVMSMFLGSIAGIGQTNIKRLMAYSSIAHMGFALVGLAAGTAIGVQNMLLYMTIYAVMNIGTFAFILSMERDGVPVTDLAALNRFAWTDPVKALAMLVLMFSLAGVPPTLGFFAK----FGVLTAAVDAGMGWLAVLGVIA--SVIGAFYYLRIVYYMYFG 431          
The following BLAST results are available for this feature:
BLAST of CV712522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 487
Match NameE-valueIdentityDescription
NU5M_ACACA5.794e-1125.11NADH-ubiquinone oxidoreductase chain 5 OS=Acantham... [more]
NUON_HELMI7.567e-1124.51NADH-quinone oxidoreductase subunit N OS=Heliobact... [more]
NUON_PARDP9.883e-1123.42NADH-quinone oxidoreductase subunit N OS=Paracoccu... [more]
NUON_CUPTR9.883e-1126.61NADH-quinone oxidoreductase subunit N OS=Cupriavid... [more]
NUON2_ROSCS9.883e-1123.89NADH-quinone oxidoreductase subunit N 2 OS=Roseifl... [more]
NUON2_CHLT39.883e-1122.94NADH-quinone oxidoreductase subunit N 2 OS=Chloroh... [more]
NQO14_PARDE9.883e-1123.42NADH-quinone oxidoreductase subunit 14 OS=Paracocc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I03_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712522 ID=CV712522; Name=CV712522; organism=Citrus sinensis; type=EST; length=768bp
CCAGAATCAAAAAAATAAGAGTTTGGGGCATTAAATAGCTTGTACCCATA
GAACATTTGCCGTAACATAGATAATGAATAAATAGGAGTTAATATCATTC
CAATTGCCATTACAAAAGTGATTACTATTTTTGGCATTAAAAAAAATTTT
TGGCTGGTAATTATTCCAAAAAATACTATCAATTCTGCAACAAAACCACT
CATGCCGGGTAATGCAAGGGAGGCCATCGATAAGATACTGAATAGCGTGA
AGATCTTTGGAATTGGTATAGCTAGTCCGCCCATTTCGTCTAGATAAGCA
AAACGTATTCTATCATAACTCGTTCCTGCCAAGAAAAAAAGTGCAGCACT
AATCAACCCATGAGAAATTATTTGTAAAACGGCTCCATTGAGACCTGTAT
CGGTTATCGAGCCTATTCCTAGAATTATGAAACCCATATGAGATACAGAG
GAATAGGCTATTCTTTTTTTTAAATTCCGTTGGCCGGGAGATGTTGAAGC
TGCATAAATTATTTGCACGGTACCTACTATCATGAACCAGGGGGAAAATA
TAGAATGAGCGTGCGGTAATAGTTCCATATTGATTCGAATCAACCCATAT
GCTCCCATTTTTAATAAGATTCCGGCTAGAAGCATACAAGTACTGTAATG
TGCCTCTCCGTGGGTGTCTGGTAACCACGTATGAAAGGGTATAATTGGCA
ATTTGACAGCAAAAGCAATAAAAAATCCAATATAGAATATTATTTCCAGT
GCCACAGGATACGACCGA
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