CV712522
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV712522 vs. ExPASy Swiss-Prot
Match: NU4C_PHYPA (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Physcomitrella patens GN=ndhD PE=3 SV=1) HSP 1 Score: 354.369 bits (908), Expect = 4.048e-97 Identity = 173/243 (71.19%), Postives = 200/243 (82.30%), Query Frame = -2 Query: 39 RSYPVALEXXXXXXXXXXXAVKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYK 767 +SYP+ LE AVKLPI P HTWLPDTHGEAHYSTCMLLAGILLKMG YGLIRINMELLPHAHSIF+PW + VG +QI+YAA S QRNLK+RIAYSS+SHMGF+++GIGS+TD GLNGA+LQ++SHGLI AALFFLAG +YDR R +LD+MGG AI +PKIFT+FS SMASLALPGMSGFVAE +VF GI+ S K+ KI++T + AIG+ILTPIY LSMLRQMFYGYK Sbjct: 203 KSYPLELEIILYLGFFIAYAVKLPIFPLHTWLPDTHGEAHYSTCMLLAGILLKMGGYGLIRINMELLPHAHSIFAPWIVAVGAIQIVYAALISFSQRNLKRRIAYSSISHMGFVLIGIGSMTDVGLNGAILQMVSHGLIGAALFFLAGITYDRTRTLFLDQMGGTAIYMPKIFTMFSSFSMASLALPGMSGFVAEFLVFLGIVVSNKYSFNFKILVTIIEAIGIILTPIYLLSMLRQMFYGYK 445
BLAST of CV712522 vs. ExPASy Swiss-Prot
Match: NU4C_ANTFO (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Anthoceros formosae GN=ndhD PE=2 SV=2) HSP 1 Score: 353.214 bits (905), Expect = 9.017e-97 Identity = 171/255 (67.06%), Postives = 205/255 (80.39%), Query Frame = -2 Query: 3 RSYPVALEXXXXXXXXXXXAVKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSYFFDS 767 RSYP+ LE AVKLP++P HTWLPDTHGEAHYSTCMLLAGILLKMG YGLIRINMELL HAHSIF+PW +++G +QI+Y+A TS Q NLK+RIAYSSVSHMGF+++GIGS TD G+NGA+LQ+ISHGLI AALFF AG +YDR R +L++MGG+A IPKIFT+FS SMASLALPG+SGFVAEL++F GI++SQ F + K+VI V A G+ILTPIY LSMLRQMFYGY++ SY D+ Sbjct: 203 RSYPIGLEIILYLGFFIAYAVKLPMVPLHTWLPDTHGEAHYSTCMLLAGILLKMGGYGLIRINMELLSHAHSIFAPWLVVIGAIQIVYSALTSLSQLNLKRRIAYSSVSHMGFVLIGIGSTTDIGVNGAILQMISHGLIGAALFFSAGVTYDRTRTLFLNQMGGIATSIPKIFTMFSSFSMASLALPGLSGFVAELMIFLGIVSSQNFSFLFKVVIIIVAATGIILTPIYLLSMLRQMFYGYRIIKNLTSYVTDA 457
BLAST of CV712522 vs. ExPASy Swiss-Prot
Match: NU4C_HUPLU (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Huperzia lucidula GN=ndhD PE=3 SV=2) HSP 1 Score: 345.51 bits (885), Expect = 1.880e-94 Identity = 176/257 (68.48%), Postives = 202/257 (78.60%), Query Frame = -2 Query: 3 RSYPVALEXXXXXXXXXXXAVKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGY--KLFNAPNSYFFDS 767 RSYP+ALE AVKLPI P HTWLPDTHGEAHYSTCMLLAGILLKMG YGLIRINMELLPHAHSIF+PW +IVG QI+YAAS S QRN K+RIAYSS+SHMGF+++GIGS T+ GLNGA+LQ+ISHGLI AA F LAGTSYDR R +LD+MGG+ +PK FT+FS SMASLALPG SGF AE +VF GI++ + + L KI+IT V AIG+ILTPIY LSMLRQMFYGY K+ N S+ DS Sbjct: 205 RSYPIALEIVLYLSFFVAYAVKLPIFPLHTWLPDTHGEAHYSTCMLLAGILLKMGGYGLIRINMELLPHAHSIFAPWLVIVGAFQIVYAASISSSQRNSKRRIAYSSISHMGFVLIGIGSATNIGLNGAILQMISHGLIGAAPFSLAGTSYDRTRTPFLDQMGGIGTSMPKTFTMFSSFSMASLALPGTSGFAAESMVFPGIVSGKNYSLPFKIIITIVEAIGIILTPIYLLSMLRQMFYGYFNKVSNLSISHAMDS 461
BLAST of CV712522 vs. ExPASy Swiss-Prot
Match: NU4C_PSINU (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Psilotum nudum GN=ndhD PE=3 SV=2) HSP 1 Score: 342.043 bits (876), Expect = 2.079e-93 Identity = 168/253 (66.40%), Postives = 204/253 (80.63%), Query Frame = -2 Query: 9 RSYPVALEXXXXXXXXXXXAVKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSYFF 767 RSYP+A+E AVKLPI+PFHTWLPDTHGEAHYSTCMLLAGILLKMG YGLIRINMELLPHAH +FSP + +G VQI YA+ S N+K+RIAYSSVSHMGF+I+GI SITD G NGA+LQ+ISHGLI AALFFLAG SYDR + YLD++GG+A+P+P++FT+FS S+ASLALPGMS FVAE ++F GI+T+ + L+ K +I F+ AIG+ILTPIY LSMLR+MFYG+K++ NS FF Sbjct: 203 RSYPIAVETALYFSFLIAYAVKLPILPFHTWLPDTHGEAHYSTCMLLAGILLKMGGYGLIRINMELLPHAHFLFSPLLVTMGAVQIAYASLISFSLPNIKRRIAYSSVSHMGFVIIGISSITDIGTNGAILQMISHGLIGAALFFLAGISYDRTQTLYLDQLGGIAVPMPRLFTMFSFFSLASLALPGMSSFVAEFLIFLGIVTNPYYSLIFKSIILFIGAIGVILTPIYLLSMLRKMFYGFKIYQ--NSLFF 453
BLAST of CV712522 vs. ExPASy Swiss-Prot
Match: NU4C_ADICA (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Adiantum capillus-veneris GN=ndhD PE=2 SV=2) HSP 1 Score: 340.502 bits (872), Expect = 6.048e-93 Identity = 164/254 (64.57%), Postives = 198/254 (77.95%), Query Frame = -2 Query: 6 RSYPVALEXXXXXXXXXXXAVKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSYFFD 767 +SYP++LE AVKLPI PFHTWLPDTHGEAHYSTCMLLAG+LLKMG YGLIRIN+ELL HAH + W M+ G +QIIYA+ S QRN K+RIAYSS+SHMGF+ +GIGS T+TG+NGA+LQ+ISHGLI AALFFLAGT YDR R LD++GG AI +PK+FT+FS LS+ASLALPGMSGFV+EL+VF G++TS ++ K IT + IG +LTPIY LSMLRQ+FYGY+ F+ N Y D Sbjct: 204 KSYPLSLEVLIYVGFLVAYAVKLPIFPFHTWLPDTHGEAHYSTCMLLAGVLLKMGGYGLIRINLELLTHAHFLLGSWMMLFGAIQIIYASLISMSQRNFKRRIAYSSISHMGFVTIGIGSFTETGINGAILQMISHGLIGAALFFLAGTCYDRTRTYLLDQLGGAAISMPKLFTMFSTLSLASLALPGMSGFVSELLVFLGVVTSNQYSFAFKAGITVLEGIGTVLTPIYLLSMLRQLFYGYRFFDKSNPYSID 457
BLAST of CV712522 vs. ExPASy Swiss-Prot
Match: NU4C_CHAGL (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Chaetosphaeridium globosum GN=ndhD PE=3 SV=1) HSP 1 Score: 336.65 bits (862), Expect = 8.734e-92 Identity = 163/255 (63.92%), Postives = 199/255 (78.04%), Query Frame = -2 Query: 3 RSYPVALEXXXXXXXXXXXAVKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSYFFDS 767 + YP+ALE AVKLP P HTWLPDTHGEAHYSTCMLLAGIL+KMG YGLIRINMELLP+AH IFSPW ++G +QIIY A TS GQRNLK+RIAYSS+SHMGF+++GI S TD GL+GA++Q++SHGLI A LFFLAGTSYDRIR +LD+MGG++ +PKIF +F+ ++ASLALPGMSGFVAEL+VF G + S + +ITF+ A+G+ILTPIY LSMLRQMFYGY+ N+ D+ Sbjct: 204 KQYPLALEIVLYLGFLIAFAVKLPAFPLHTWLPDTHGEAHYSTCMLLAGILIKMGGYGLIRINMELLPNAHVIFSPWIALIGGIQIIYGALTSLGQRNLKRRIAYSSISHMGFVMIGISSFTDLGLSGAMMQMVSHGLIGAGLFFLAGTSYDRIRTLFLDQMGGISTTMPKIFAMFTTCALASLALPGMSGFVAELMVFLGFLKSNAYSFDFIALITFLEAVGIILTPIYLLSMLRQMFYGYRKLKLTNTLLLDA 458
BLAST of CV712522 vs. ExPASy Swiss-Prot
Match: NU4C_ZYGCR (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Zygnema circumcarinatum GN=ndhD PE=3 SV=1) HSP 1 Score: 322.783 bits (826), Expect = 1.305e-87 Identity = 156/244 (63.93%), Postives = 193/244 (79.10%), Query Frame = -2 Query: 36 RSYPVALEXXXXXXXXXXXAVKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKL 767 +SYP+ LE AVKLP P HTWLPDTHGEAHYSTCMLLAGILLKMG YG IR+NMELLPHAH++F+PW + +G QI+YAA S QRNLK+RIAYSSVSHMGF+++G GS++D GL+GA+LQ+ISHGLI A+LFFLAGTSYDR R L EMG A +PK+F +F+ +MASLALPGMSGFV+EL+VFFG++TS + + +IT + A+G+ILTPIY LSM+RQMFYG ++ Sbjct: 203 KSYPLGLEILIYLGFLIAYAVKLPAFPLHTWLPDTHGEAHYSTCMLLAGILLKMGGYGFIRVNMELLPHAHTVFAPWLVALGAYQIVYAALVSFAQRNLKRRIAYSSVSHMGFVLVGAGSLSDLGLSGAMLQMISHGLIGASLFFLAGTSYDRTRTLMLREMGAWASQMPKMFAMFTTCAMASLALPGMSGFVSELMVFFGMVTSAAYSPYFRAIITLIEAVGIILTPIYLLSMVRQMFYGSRI 446
BLAST of CV712522 vs. ExPASy Swiss-Prot
Match: NU4C_CHAVU (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Chara vulgaris GN=ndhD PE=3 SV=1) HSP 1 Score: 320.857 bits (821), Expect = 4.959e-87 Identity = 160/255 (62.75%), Postives = 196/255 (76.86%), Query Frame = -2 Query: 3 RSYPVALEXXXXXXXXXXXAVKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSYFFDS 767 + YP LE AVKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMG YG IRINM L P+AH+ F+PW +I+GTVQIIYAAS Q+NLK+RIAYSS+SHMGF+++GI S T+ GL+GA+ Q+ISHGLI A+LFFLAGT+YDRIR L EMGG+A+ +PK+F++F+ S+ASLALP MSGFVAE+++F GII+S + + I A+G+ILTPIY LSMLRQMFYG F+ + F DS Sbjct: 203 KEYPFILEKILYLGFGFAYAVKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGGYGWIRINMTLFPNAHAYFAPWLVILGTVQIIYAASVCLSQKNLKRRIAYSSISHMGFVLIGICSFTNIGLSGAICQMISHGLIGASLFFLAGTTYDRIRTVSLSEMGGIALKMPKMFSMFTGFSLASLALPTMSGFVAEMMIFLGIISSTFYSPSFRCFIILFQALGVILTPIYLLSMLRQMFYGVDTFHFESMSFIDS 457
BLAST of CV712522 vs. ExPASy Swiss-Prot
Match: NU4C_NEPOL (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Nephroselmis olivacea GN=ndhD PE=3 SV=1) HSP 1 Score: 319.701 bits (818), Expect = 1.105e-86 Identity = 157/241 (65.15%), Postives = 190/241 (78.84%), Query Frame = -2 Query: 45 RSYPVALEXXXXXXXXXXXAVKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYG 767 R Y + +E VKLP IP HTWLPDTHGEAHYSTCMLLAGILLKMG Y LIRINM +LPHAH++FSPW + VG V IIYAA TS QRNLK++IAYSSVSHMGF+++GIGS+++ GLNGA+LQ+ISHGLI A+LFFLAGT+YDR R L+EMGGLA +PK F LF+ S+ASLALPGMSGF AEL+VF G++TS+ + + ++T AIG++LTPIY LSMLRQ+FYG Sbjct: 203 REYSLPVEILLYTGFLIAYGVKLPAIPVHTWLPDTHGEAHYSTCMLLAGILLKMGGYALIRINMNMLPHAHALFSPWLIGVGVVNIIYAALTSFAQRNLKRKIAYSSVSHMGFVLIGIGSLSEAGLNGAMLQMISHGLIGASLFFLAGTTYDRTRTLVLEEMGGLATFMPKTFALFTACSLASLALPGMSGFFAELLVFLGLVTSEAYSPTFRAIMTVFEAIGILLTPIYLLSMLRQLFYG 443
BLAST of CV712522 vs. ExPASy Swiss-Prot
Match: NU4C_STAPU (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Staurastrum punctulatum GN=ndhD PE=3 SV=1) HSP 1 Score: 317.775 bits (813), Expect = 4.198e-86 Identity = 155/242 (64.05%), Postives = 188/242 (77.69%), Query Frame = -2 Query: 42 RSYPVALEXXXXXXXXXXXAVKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGY 767 +SYP+ LE AVKLP+ PFHTWLPDTHGEAHYSTCMLLAGILLKMG YG IRIN+E+L AH IF+PW + +G QI+YAA S Q+NLK+RIAYSSVSHMGF+++G GS +D GL+GA+LQ+ISHGLI A LFFLAGT+YDR R LD+MGG P+PK F+ F+ +MASLALPGMSGFVAEL++F GI+ S + + K +IT V IG+ILTPIY LSM+R+MFYGY Sbjct: 203 QSYPLGLEILVYLGFLIAYAVKLPVFPFHTWLPDTHGEAHYSTCMLLAGILLKMGGYGFIRINIEMLSDAHRIFAPWLVALGAGQIVYAALVSIAQKNLKRRIAYSSVSHMGFVLIGAGSFSDLGLSGAILQMISHGLIGAGLFFLAGTTYDRSRTLILDDMGGWGSPLPKTFSTFTACAMASLALPGMSGFVAELMIFLGIVASSVYSPLFKAIITCVEGIGIILTPIYLLSMVRKMFYGY 444 The following BLAST results are available for this feature:
BLAST of CV712522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 487
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Sequences
The
following sequences are available for this feature:
EST sequence >CV712522 ID=CV712522; Name=CV712522; organism=Citrus sinensis; type=EST; length=768bpback to top |