CV712522

Overview
NameCV712522
Unique NameCV712522
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712522 vs. ExPASy Swiss-Prot
Match: NU4C_CHLAT (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Chlorokybus atmophyticus GN=ndhD PE=3 SV=2)

HSP 1 Score: 317.775 bits (813), Expect = 4.198e-86
Identity = 158/249 (63.45%), Postives = 193/249 (77.51%), Query Frame = -2
Query:   21 RSYPVALEXXXXXXXXXXXAVKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPN 767
            + YP+ LE           AVKLP  P HTWLPDTHGEAHYSTCMLLAGILLKMG Y LIRINM++LP+AH IF+P+ +I+G + IIYAA TS  QRN+K++IAYSSVSHMGF+++GIGS+T+ GL+GAVLQ+ISHGLI A+LFFLAGT+YDR R   L++MGG+A  +PK F +F+  S+ASLALPGMSGFVAEL+VF G  TS  +    K +ITF+  IG+ILTPIY LSMLRQ FYG + F   N
Sbjct:  202 KEYPLNLEILLYIGFLIAYAVKLPAFPLHTWLPDTHGEAHYSTCMLLAGILLKMGGYALIRINMDMLPNAHLIFAPFLIIIGVINIIYAALTSFAQRNMKRKIAYSSVSHMGFVLIGIGSLTNLGLSGAVLQMISHGLIGASLFFLAGTTYDRTRTLILEDMGGVAKKMPKTFAMFTTCSLASLALPGMSGFVAELMVFLGFATSASYSFEFKAIITFLEGIGIILTPIYLLSMLRQAFYGSESFTLLN 450          
BLAST of CV712522 vs. ExPASy Swiss-Prot
Match: NU4C_MESVI (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Mesostigma viride GN=ndhD PE=3 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 1.493e-83
Identity = 151/241 (62.66%), Postives = 188/241 (78.01%), Query Frame = -2
Query:   45 RSYPVALEXXXXXXXXXXXAVKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYG 767
            + YP+ LE           AVKLP  P HTWLPDTHGEAHYSTCMLLAGILLKMG Y LIRINM +LP+AH  F+P+  I+G + IIYAA TS  QRN+K++IAYSS+SHMGF+++GI S TD GL+GA+LQ++SHGLI A+LFFLAGT+YDR R   L++MGG+A  +PKIF +F+  S+ASLALPGMSGFVAEL+VF G   S  + +  + +ITF+ AIG+I+TPIY LSMLRQ+FYG
Sbjct:  202 KEYPINLEILFYICFLIAYAVKLPAFPVHTWLPDTHGEAHYSTCMLLAGILLKMGGYALIRINMNMLPNAHIYFAPYLAIIGVINIIYAALTSFAQRNIKRKIAYSSISHMGFVLIGISSFTDIGLSGAMLQMVSHGLIGASLFFLAGTTYDRTRTLILEDMGGIAKYMPKIFAMFTTCSLASLALPGMSGFVAELMVFLGFANSNAYSIEFRGIITFLEAIGIIVTPIYLLSMLRQVFYG 442          
BLAST of CV712522 vs. ExPASy Swiss-Prot
Match: NU4C_ACAM1 (NAD(P)H-quinone oxidoreductase chain 4 OS=Acaryochloris marina (strain MBIC 11017) GN=ndhD PE=3 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 4.653e-77
Identity = 143/241 (59.34%), Postives = 180/241 (74.69%), Query Frame = -2
Query:   45 RSYPVALEXXXXXXXXXXXAVKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYG 767
            + YP+  +           AVKLPI+P HTWLPD HGEA     MLLAGILLKMG Y LIR+N+ELLP AH+ F+P  +I+G V IIYAA TS  QRNLK++IAYSS+SHMGF+++GI S TD G++GAVLQ++SHGLI A+LFFL G +YDR     L+EMGG+A  +PKIF +F+  SMASLALPGMSGFVAEL+VF G+ TS  + L  ++ +  +  IG+ILTPIY LSMLR++FYG
Sbjct:  206 KDYPLTFQLLCYTGFLVAFAVKLPIVPLHTWLPDAHGEATAPVHMLLAGILLKMGGYALIRMNVELLPDAHAYFAPALIILGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIGIASFTDLGMSGAVLQMVSHGLIGASLFFLVGATYDRTHTLILEEMGGVAQNMPKIFAMFTTCSMASLALPGMSGFVAELMVFVGLATSDAYSLAFRVPVVILAGIGVILTPIYLLSMLREIFYG 446          
BLAST of CV712522 vs. ExPASy Swiss-Prot
Match: NU4C2_ANASP (NAD(P)H-quinone oxidoreductase chain 4-2 OS=Anabaena sp. (strain PCC 7120) GN=ndhD2 PE=3 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.354e-76
Identity = 140/221 (63.35%), Postives = 172/221 (77.83%), Query Frame = -2
Query:   45 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYG 707
            +KLPIIP HTWLPD HGEA     MLLAGILLKMG Y LIR+N  +LP AH+ F+P  +++G V IIYAA TS  QRNLK++IAYSS+SHMGF+I+G  S TD GL+GAVLQ++SHGLI A+LFFL G +YDR     LDEMGG+   +PKIF +F+  SMASLALPGMSGFVAEL+VF G  TS  +    K+++ F+MA+G+ILTPIY LSMLR++FYG
Sbjct:  224 IKLPIIPLHTWLPDAHGEATAPAHMLLAGILLKMGGYALIRMNAGILPDAHAYFAPVLVVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVIIGFASFTDLGLSGAVLQMVSHGLIGASLFFLVGATYDRTHTLMLDEMGGVGKRMPKIFAMFTACSMASLALPGMSGFVAELMVFVGFATSDAYSSTFKVIVVFLMAVGVILTPIYLLSMLREIFYG 444          
BLAST of CV712522 vs. ExPASy Swiss-Prot
Match: NU4C1_ANAVT (NAD(P)H-quinone oxidoreductase chain 4 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ndhD1 PE=3 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.354e-76
Identity = 140/221 (63.35%), Postives = 172/221 (77.83%), Query Frame = -2
Query:   45 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYG 707
            +KLPIIP HTWLPD HGEA     MLLAGILLKMG Y LIR+N  +LP AH+ F+P  +++G V IIYAA TS  QRNLK++IAYSS+SHMGF+I+G  S TD GL+GAVLQ++SHGLI A+LFFL G +YDR     LDEMGG+   +PKIF +F+  SMASLALPGMSGFVAEL+VF G  TS  +    K+++ F+MA+G+ILTPIY LSMLR++FYG
Sbjct:  224 IKLPIIPLHTWLPDAHGEATAPAHMLLAGILLKMGGYALIRMNAGILPDAHAYFAPVLVVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVIIGFASFTDLGLSGAVLQMVSHGLIGASLFFLVGATYDRTHTLMLDEMGGVGKRMPKIFAMFTACSMASLALPGMSGFVAELMVFVGFATSDAYSSTFKVIVVFLMAVGVILTPIYLLSMLREIFYG 444          
BLAST of CV712522 vs. ExPASy Swiss-Prot
Match: NU4C2_SYNJA (NAD(P)H-quinone oxidoreductase chain 4 2 OS=Synechococcus sp. (strain JA-3-3Ab) GN=ndhD2 PE=3 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 1.146e-75
Identity = 135/241 (56.02%), Postives = 184/241 (76.35%), Query Frame = -2
Query:   45 RSYPVALEXXXXXXXXXXXAVKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYG 767
            ++YP++ +            VKLP+ P HTWLPD HGEA     MLLAGILLKMG Y L+R+N+ +LP AH  F+P  +++G V II+AA TS  QRNLK++IAYSS+SHMGF+++GIGS+T+ G++GA+LQ+ISHGLI A+LFFL G +YDR     L+EMGG+ + +PKIF++F+  S+ASLALPGMSGFVAEL+VF G+ T+  + L  ++V+ F+ A+G+ILTPIY LSMLRQ+F+G
Sbjct:  219 KAYPLSFQLLLYGAFLIAYGVKLPVFPLHTWLPDAHGEATAPVHMLLAGILLKMGGYALMRMNVGMLPDAHLYFAPVLIVLGVVNIIFAALTSFAQRNLKRKIAYSSISHMGFVLIGIGSLTEIGMSGAMLQMISHGLIGASLFFLVGATYDRTHTLELEEMGGVGLKMPKIFSMFTACSLASLALPGMSGFVAELMVFIGMATTDAYSLPFRLVVVFLAAVGVILTPIYLLSMLRQIFFG 459          
BLAST of CV712522 vs. ExPASy Swiss-Prot
Match: NU4C2_MICAN (NAD(P)H-quinone oxidoreductase chain 4 2 OS=Microcystis aeruginosa (strain NIES-843) GN=ndhD2 PE=3 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 5.687e-75
Identity = 138/241 (57.26%), Postives = 176/241 (73.03%), Query Frame = -2
Query:   45 RSYPVALEXXXXXXXXXXXAVKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYG 767
            + YP+ALE            VKL I P HTWLPD HGEA     M+LAG+LLKMG YGLIR+NM LLP AH  F+P   I+G V IIY A  S GQ+N+K+R+AYSSVSHMGF++LGI S TD G++GA+LQ++SHGLI+A LFFLAG +YDR     L+EMGG+A  +PK+F LF+  +MASLALPGMSGF +E+ VF G+ +S  +    ++V  F+ ++G+ILTPIY LSMLRQ+FYG
Sbjct:  205 KDYPLALELVLYAGLLIAFGVKLAIFPLHTWLPDAHGEASAPVSMILAGVLLKMGGYGLIRLNMGLLPDAHIYFAPILAILGVVNIIYGAFASFGQQNMKRRLAYSSVSHMGFVLLGIASFTDVGISGAMLQMLSHGLIAAVLFFLAGVTYDRTHTLALNEMGGIAQAMPKVFALFTAGAMASLALPGMSGFASEITVFIGVTSSDVYSQTFRVVTVFLASVGLILTPIYLLSMLRQVFYG 445          
BLAST of CV712522 vs. ExPASy Swiss-Prot
Match: NU4C2_SYNJB (NAD(P)H-quinone oxidoreductase chain 4 2 OS=Synechococcus sp. GN=ndhD2 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.686e-74
Identity = 134/241 (55.60%), Postives = 181/241 (75.10%), Query Frame = -2
Query:   45 RSYPVALEXXXXXXXXXXXAVKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYG 767
            ++YP+  +            VKLPI P HTWLPD HGEA     MLLAGILLKMG Y L+R+N  +LP AH  F+P  +++G V II+AA TS  QRNLK++IA SS+SHMGF+++GIGS+T+ G++GA+LQ+ISHGLI A+LFFL G +YDR     L+EMGG+ + +PKIF++F+  S+ASLALPGMSGFVAE++VF G+ T+  + L  ++V+ F+ A+G+ILTPIY LSMLRQ+F+G
Sbjct:  219 KTYPLTFQLLMYGAFLIAYGVKLPIFPLHTWLPDAHGEATAPVHMLLAGILLKMGGYALMRMNAGMLPDAHLYFAPVLIVLGVVNIIFAALTSFAQRNLKRKIACSSISHMGFVLIGIGSLTEIGMSGAMLQMISHGLIGASLFFLVGATYDRTHTLELEEMGGVGLKMPKIFSMFTACSLASLALPGMSGFVAEIMVFIGMATTDAYSLPFRLVVVFLAAVGVILTPIYLLSMLRQIFFG 459          
BLAST of CV712522 vs. ExPASy Swiss-Prot
Match: NU4C1_THEEB (NAD(P)H-quinone oxidoreductase chain 4 1 OS=Thermosynechococcus elongatus (strain BP-1) GN=ndhD1 PE=3 SV=2)

HSP 1 Score: 278.1 bits (710), Expect = 3.686e-74
Identity = 134/221 (60.63%), Postives = 174/221 (78.73%), Query Frame = -2
Query:   45 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYG 707
            VKLPI+P HTWLPD HGEA     MLLAGILLKMG Y LIR+N+++LP AH+ F+P  +I+G V IIYAA TS  QRNLK++IAYSS+SH+GF+++GI S T+ G++GAVLQ++SHGLI A+LFFL G +YDR     L+EMGG+   + KIF +F+  S+ASLALPGMSGFVAEL+VF G  TS  + L  ++++ F+ A+G+ILTPIY LSMLR++FYG
Sbjct:  224 VKLPIVPLHTWLPDAHGEATAPVHMLLAGILLKMGGYALIRMNVDMLPAAHAKFAPVLVILGVVNIIYAALTSYAQRNLKRKIAYSSISHIGFVLIGIASFTNLGMSGAVLQMVSHGLIGASLFFLVGATYDRTHTLILEEMGGVGQKMKKIFAMFTACSLASLALPGMSGFVAELMVFIGFATSDAYSLPFRVIVVFLAAVGVILTPIYLLSMLREIFYG 444          
BLAST of CV712522 vs. ExPASy Swiss-Prot
Match: NU4C2_TRIEI (NAD(P)H-quinone oxidoreductase chain 4 2 OS=Trichodesmium erythraeum (strain IMS101) GN=ndhD2 PE=3 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 1.830e-73
Identity = 137/240 (57.08%), Postives = 172/240 (71.67%), Query Frame = -2
Query:   48 RSYPVALEXXXXXXXXXXXAVKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFY 767
            + YP+A E            VKL + P HTWLPD HGEA     M+LAG+LLKMG YGLIR+N+E+L  AH  F+P   I+G V I+Y    S GQ N+K+R+AYSSV+HMGF++LGI S TD G++GA+LQ+ISHGLI+A LFFLAG +YDR+    LDEMGGL   +PKIF LF+I +MASLALPGMSGF +EL+VF G+ +S  +      V  F+ A+G+ILTPIY LSMLRQMFY
Sbjct:  205 KDYPLAFELLLYLGLLITFGVKLAVFPLHTWLPDAHGEASAPVSMILAGVLLKMGGYGLIRLNLEMLSDAHVYFAPVLAILGVVNIVYGGLNSFGQSNMKRRLAYSSVAHMGFVLLGIASFTDLGISGALLQMISHGLIAAVLFFLAGVTYDRLHTLALDEMGGLGQVMPKIFALFTISAMASLALPGMSGFASELMVFVGVTSSDIYSSTFCTVTVFLAAVGLILTPIYLLSMLRQMFY 444          
The following BLAST results are available for this feature:
BLAST of CV712522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 487
Match NameE-valueIdentityDescription
NU4C_CHLAT4.198e-8663.45NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_MESVI1.493e-8362.66NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_ACAM14.653e-7759.34NAD(P)H-quinone oxidoreductase chain 4 OS=Acaryoch... [more]
NU4C2_ANASP1.354e-7663.35NAD(P)H-quinone oxidoreductase chain 4-2 OS=Anabae... [more]
NU4C1_ANAVT1.354e-7663.35NAD(P)H-quinone oxidoreductase chain 4 1 OS=Anabae... [more]
NU4C2_SYNJA1.146e-7556.02NAD(P)H-quinone oxidoreductase chain 4 2 OS=Synech... [more]
NU4C2_MICAN5.687e-7557.26NAD(P)H-quinone oxidoreductase chain 4 2 OS=Microc... [more]
NU4C2_SYNJB3.686e-7455.60NAD(P)H-quinone oxidoreductase chain 4 2 OS=Synech... [more]
NU4C1_THEEB3.686e-7460.63NAD(P)H-quinone oxidoreductase chain 4 1 OS=Thermo... [more]
NU4C2_TRIEI1.830e-7357.08NAD(P)H-quinone oxidoreductase chain 4 2 OS=Tricho... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I03_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712522 ID=CV712522; Name=CV712522; organism=Citrus sinensis; type=EST; length=768bp
CCAGAATCAAAAAAATAAGAGTTTGGGGCATTAAATAGCTTGTACCCATA
GAACATTTGCCGTAACATAGATAATGAATAAATAGGAGTTAATATCATTC
CAATTGCCATTACAAAAGTGATTACTATTTTTGGCATTAAAAAAAATTTT
TGGCTGGTAATTATTCCAAAAAATACTATCAATTCTGCAACAAAACCACT
CATGCCGGGTAATGCAAGGGAGGCCATCGATAAGATACTGAATAGCGTGA
AGATCTTTGGAATTGGTATAGCTAGTCCGCCCATTTCGTCTAGATAAGCA
AAACGTATTCTATCATAACTCGTTCCTGCCAAGAAAAAAAGTGCAGCACT
AATCAACCCATGAGAAATTATTTGTAAAACGGCTCCATTGAGACCTGTAT
CGGTTATCGAGCCTATTCCTAGAATTATGAAACCCATATGAGATACAGAG
GAATAGGCTATTCTTTTTTTTAAATTCCGTTGGCCGGGAGATGTTGAAGC
TGCATAAATTATTTGCACGGTACCTACTATCATGAACCAGGGGGAAAATA
TAGAATGAGCGTGCGGTAATAGTTCCATATTGATTCGAATCAACCCATAT
GCTCCCATTTTTAATAAGATTCCGGCTAGAAGCATACAAGTACTGTAATG
TGCCTCTCCGTGGGTGTCTGGTAACCACGTATGAAAGGGTATAATTGGCA
ATTTGACAGCAAAAGCAATAAAAAATCCAATATAGAATATTATTTCCAGT
GCCACAGGATACGACCGA
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