CV712521

Overview
NameCV712521
Unique NameCV712521
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: NU4LC_LACSA (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Lactuca sativa GN=ndhE PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.089e-27
Identity = 66/95 (69.47%), Postives = 69/95 (72.63%), Query Frame = 1 
Query:   19 LVLSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSRQLKGDXXXXXXXXXXXXXXXXXXXXXXXXYRNRKSTRINQSTLLNK 303
            LVLSAYLFS+G+YGLITSRNMVRALMCLELILNAVN+NFVTFSDFFDSRQLKG                         YRNRKSTRINQS LLNK
Sbjct:    7 LVLSAYLFSVGLYGLITSRNMVRALMCLELILNAVNLNFVTFSDFFDSRQLKGAIFSIFVIAIAAAEAAIGLAIVSSIYRNRKSTRINQSNLLNK 101
[Close]
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: NU4LC_HELAN (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Helianthus annuus GN=ndhE PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.089e-27
Identity = 66/95 (69.47%), Postives = 69/95 (72.63%), Query Frame = 1 
Query:   19 LVLSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSRQLKGDXXXXXXXXXXXXXXXXXXXXXXXXYRNRKSTRINQSTLLNK 303
            LVLSAYLFS+G+YGLITSRNMVRALMCLELILNAVN+NFVTFSDFFDSRQLKG                         YRNRKSTRINQS LLNK
Sbjct:    7 LVLSAYLFSVGLYGLITSRNMVRALMCLELILNAVNLNFVTFSDFFDSRQLKGAIFSIFVIAIAAAEAAIGLAIVSSIYRNRKSTRINQSNLLNK 101
[Close]
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: NU4LC_CICAR (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Cicer arietinum GN=ndhE PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.422e-27
Identity = 67/95 (70.53%), Postives = 69/95 (72.63%), Query Frame = 1 
Query:   19 LVLSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSRQLKGDXXXXXXXXXXXXXXXXXXXXXXXXYRNRKSTRINQSTLLNK 303
            LVLSAYLFSIGIYGLITSRNMVRALMCLELILNAVNIN VTFSDFFD+RQLKG+                        YRNRKSTRINQS LLNK
Sbjct:    7 LVLSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINLVTFSDFFDNRQLKGNIFSIFVIAIAAAEAAIGLAIVSSIYRNRKSTRINQSNLLNK 101
[Close]
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: NU4LC_NYMAL (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Nymphaea alba GN=ndhE PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.857e-27
Identity = 67/95 (70.53%), Postives = 68/95 (71.58%), Query Frame = 1 
Query:   19 LVLSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSRQLKGDXXXXXXXXXXXXXXXXXXXXXXXXYRNRKSTRINQSTLLNK 303
            LVLSAYLFSIGIYGLITSRNMVRALMCLELILNAVN+N VTFSD FDSRQLKGD                        YRNRKSTRINQS LLNK
Sbjct:    7 LVLSAYLFSIGIYGLITSRNMVRALMCLELILNAVNMNLVTFSDLFDSRQLKGDIFSIFVIAIAAAEAAIGPAIVSSIYRNRKSTRINQSNLLNK 101
[Close]
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: NU4LC_NUPAD (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Nuphar advena GN=ndhE PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.857e-27
Identity = 67/95 (70.53%), Postives = 68/95 (71.58%), Query Frame = 1 
Query:   19 LVLSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSRQLKGDXXXXXXXXXXXXXXXXXXXXXXXXYRNRKSTRINQSTLLNK 303
            LVLSAYLFSIGIYGLITSRNMVRALMCLELILNAVN+N VTFSD FDSRQLKGD                        YRNRKSTRINQS LLNK
Sbjct:    7 LVLSAYLFSIGIYGLITSRNMVRALMCLELILNAVNMNLVTFSDLFDSRQLKGDVFSIFVIAIAAAEAAIGPAIVSSIYRNRKSTRINQSNLLNK 101
[Close]
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: NU4LC_NASOF (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Nasturtium officinale GN=ndhE PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.857e-27
Identity = 66/95 (69.47%), Postives = 69/95 (72.63%), Query Frame = 1 
Query:   19 LVLSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSRQLKGDXXXXXXXXXXXXXXXXXXXXXXXXYRNRKSTRINQSTLLNK 303
            LVLSAYLF IG+YGLITSRNMVRALMCLELILNAVN+NFVTFSDFFD+ QLKGD                        YRNRKSTRINQSTLLNK
Sbjct:    7 LVLSAYLFLIGLYGLITSRNMVRALMCLELILNAVNMNFVTFSDFFDNSQLKGDIFCIFVIAIAAAEAAIGLAIVSSIYRNRKSTRINQSTLLNK 101
[Close]
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: NU4LC_LIRTU (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Liriodendron tulipifera GN=ndhE PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.857e-27
Identity = 66/95 (69.47%), Postives = 68/95 (71.58%), Query Frame = 1 
Query:   19 LVLSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSRQLKGDXXXXXXXXXXXXXXXXXXXXXXXXYRNRKSTRINQSTLLNK 303
            L+LSAYLFSIGIYGLITSRNMVRALMCLELILNAVN+N VTFSD FDSRQLKGD                        YRNRKSTRINQS LLNK
Sbjct:    7 LILSAYLFSIGIYGLITSRNMVRALMCLELILNAVNLNLVTFSDLFDSRQLKGDIFSIFVIAIAAAEAAIGPAIVSSIYRNRKSTRINQSNLLNK 101
[Close]
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: NU4LC_LEPVR (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Lepidium virginicum GN=ndhE PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.857e-27
Identity = 66/95 (69.47%), Postives = 69/95 (72.63%), Query Frame = 1 
Query:   19 LVLSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSRQLKGDXXXXXXXXXXXXXXXXXXXXXXXXYRNRKSTRINQSTLLNK 303
            LVLSAYLF IG+YGLITSRNMVRALMCLELILNAVN+NFVTFSDFFD+ QLKGD                        YRNRKSTRINQSTLLNK
Sbjct:    7 LVLSAYLFLIGLYGLITSRNMVRALMCLELILNAVNMNFVTFSDFFDNSQLKGDIFCIFVIAIAAAEAAIGLAIVSSIYRNRKSTRINQSTLLNK 101
[Close]
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: NU4LC_CAPBU (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Capsella bursa-pastoris GN=ndhE PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.857e-27
Identity = 66/95 (69.47%), Postives = 69/95 (72.63%), Query Frame = 1 
Query:   19 LVLSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSRQLKGDXXXXXXXXXXXXXXXXXXXXXXXXYRNRKSTRINQSTLLNK 303
            LVLSAYLF IG+YGLITSRNMVRALMCLELILNAVN+NFVTFSDFFD+ QLKGD                        YRNRKSTRINQSTLLNK
Sbjct:    7 LVLSAYLFLIGLYGLITSRNMVRALMCLELILNAVNMNFVTFSDFFDNSQLKGDIFCIFVIAIAAAEAAIGLAIVSSIYRNRKSTRINQSTLLNK 101
[Close]
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: NU4LC_AETGR (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Aethionema grandiflora GN=ndhE PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.857e-27
Identity = 66/95 (69.47%), Postives = 69/95 (72.63%), Query Frame = 1 
Query:   19 LVLSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSRQLKGDXXXXXXXXXXXXXXXXXXXXXXXXYRNRKSTRINQSTLLNK 303
            LVLSAYLF IG+YGLITSRNMVRALMCLELILNAVN+NFVTFSDFFD+ QLKGD                        YRNRKSTRINQSTLLNK
Sbjct:    7 LVLSAYLFFIGLYGLITSRNMVRALMCLELILNAVNMNFVTFSDFFDNSQLKGDIFCIFVIAIAAAEAAIGLAIVSSIYRNRKSTRINQSTLLNK 101
The following BLAST results are available for this feature:
BLAST of CV712521 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
NU4LC_LACSA1.089e-2769.47NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_HELAN1.089e-2769.47NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_CICAR1.422e-2770.53NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_NYMAL1.857e-2770.53NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_NUPAD1.857e-2770.53NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_NASOF1.857e-2769.47NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_LIRTU1.857e-2769.47NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_LEPVR1.857e-2769.47NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_CAPBU1.857e-2769.47NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_AETGR1.857e-2769.47NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I03_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712521 ID=CV712521; Name=CV712521; organism=Citrus sinensis; type=EST; length=871bp
CCCCCCTCGAGCATGTACTTGGTTTTGAGTGCCTATTTATTTTCGATTGG
CATCTATGGCTTGATTACGAGCCGAAATATGGTTCGGGCCTTGATGTGCC
TTGAACTTATACTAAATGCAGTTAATATCAATTTTGTAACATTCTCTGAT
TTTTTTGATAGTCGACAATTAAAAGGAGATATTTTTTCAATTTTTGTTAT
AGCTATTGCAGCCGCTGAAGCAGCTATCGGATCAGCTATTGTTTCGTCAA
TTTATCGTAACAGAAAATCGACGCGTATCAATCAATCGACTTTGTTGAAT
AAGTAGTATTTATAAATCATAATATTCCTAAATTGAATTTAGGATATAGA
ATATGCCCTAATTTCGATCCTGTTTGTGAAACTGTAAGAAATCAAAGTAT
CTTTGTTCCCTTGATCCAGAAGTGGATTAATTAGCAAAATTATGGTAAAT
CATTGATTCATCTGGTGTTTAAATATGACATTTCAAAATTGACTAGATCG
AAAATGAAAAAGTTCAAAACAAAAATAGATAGATCCAATGTCACATTCAG
TAAAGATTTATGATACATGTATAGGGTGTACTCAATGTGTACGAGCTTGC
CCCACGGATGTATTAGAAATGATACCTTGGGACGGATGTAAAGCAAAGCA
AATTGCTTCTGCTCCAAGAACAGAGGACTGTGTTGGTTGTAAGCGATGTG
AATCCGCCTGTCCAACGGATTTCTTGAGTGTTCGAGTTTATTTATGGCAT
GAAACAACCCGAAGCATGGGTCTAGCTTATTGATATTGATACGTTCCCGA
AAAACCCACTTGAATCCGTTTTGAATACAGTTTTTTTTTTACCGATTACC
GACAAAAACCCGTACTCGAAA
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