CV712521 | Citrus Genome Database

Overview


Name	CV712521
Unique Name	CV712521
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	871

Libraries


Library Name	Type
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_LOBMA (Photosystem I iron-sulfur center OS=Lobularia maritima GN=psaC PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 9.802e-45
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1

Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 81

[Close]

BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_LEPVR (Photosystem I iron-sulfur center OS=Lepidium virginicum GN=psaC PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 9.802e-45
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1

Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 81

[Close]

BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_JASNU (Photosystem I iron-sulfur center OS=Jasminum nudiflorum GN=psaC PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 9.802e-45
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1

Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 81

[Close]

BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_IPOPU (Photosystem I iron-sulfur center OS=Ipomoea purpurea GN=psaC PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 9.802e-45
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1

Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 81

[Close]

BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_GOSHI (Photosystem I iron-sulfur center OS=Gossypium hirsutum GN=psaC PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 9.802e-45
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1

Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 81

[Close]

BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_GOSBA (Photosystem I iron-sulfur center OS=Gossypium barbadense GN=psaC PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 9.802e-45
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1

Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 81

[Close]

BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_EUCGG (Photosystem I iron-sulfur center OS=Eucalyptus globulus subsp. globulus GN=psaC PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 9.802e-45
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1

Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 81

[Close]

BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_DRANE (Photosystem I iron-sulfur center OS=Draba nemorosa GN=psaC PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 9.802e-45
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1

Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 81

[Close]

BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_CRUWA (Photosystem I iron-sulfur center OS=Crucihimalaya wallichii GN=psaC PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 9.802e-45
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1

Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 81

[Close]

BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_COFAR (Photosystem I iron-sulfur center OS=Coffea arabica GN=psaC PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 9.802e-45
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1

Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 81

The following BLAST results are available for this feature:

BLAST of CV712521 vs. ExPASy Swiss-Prot

BLAST of CV712521 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266


Match Name	E-value	Identity	Description
PSAC_LOBMA	9.802e-45	100.00	Photosystem I iron-sulfur center OS=Lobularia mari...	[more]
PSAC_LEPVR	9.802e-45	100.00	Photosystem I iron-sulfur center OS=Lepidium virgi...	[more]
PSAC_JASNU	9.802e-45	100.00	Photosystem I iron-sulfur center OS=Jasminum nudif...	[more]
PSAC_IPOPU	9.802e-45	100.00	Photosystem I iron-sulfur center OS=Ipomoea purpur...	[more]
PSAC_GOSHI	9.802e-45	100.00	Photosystem I iron-sulfur center OS=Gossypium hirs...	[more]
PSAC_GOSBA	9.802e-45	100.00	Photosystem I iron-sulfur center OS=Gossypium barb...	[more]
PSAC_EUCGG	9.802e-45	100.00	Photosystem I iron-sulfur center OS=Eucalyptus glo...	[more]
PSAC_DRANE	9.802e-45	100.00	Photosystem I iron-sulfur center OS=Draba nemorosa...	[more]
PSAC_CRUWA	9.802e-45	100.00	Photosystem I iron-sulfur center OS=Crucihimalaya ...	[more]
PSAC_COFAR	9.802e-45	100.00	Photosystem I iron-sulfur center OS=Coffea arabica...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS08_0001I03_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I03, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CV712521 ID=CV712521; Name=CV712521; organism=Citrus sinensis; type=EST; length=871bp
CCCCCCTCGAGCATGTACTTGGTTTTGAGTGCCTATTTATTTTCGATTGG
CATCTATGGCTTGATTACGAGCCGAAATATGGTTCGGGCCTTGATGTGCC
TTGAACTTATACTAAATGCAGTTAATATCAATTTTGTAACATTCTCTGAT
TTTTTTGATAGTCGACAATTAAAAGGAGATATTTTTTCAATTTTTGTTAT
AGCTATTGCAGCCGCTGAAGCAGCTATCGGATCAGCTATTGTTTCGTCAA
TTTATCGTAACAGAAAATCGACGCGTATCAATCAATCGACTTTGTTGAAT
AAGTAGTATTTATAAATCATAATATTCCTAAATTGAATTTAGGATATAGA
ATATGCCCTAATTTCGATCCTGTTTGTGAAACTGTAAGAAATCAAAGTAT
CTTTGTTCCCTTGATCCAGAAGTGGATTAATTAGCAAAATTATGGTAAAT
CATTGATTCATCTGGTGTTTAAATATGACATTTCAAAATTGACTAGATCG
AAAATGAAAAAGTTCAAAACAAAAATAGATAGATCCAATGTCACATTCAG
TAAAGATTTATGATACATGTATAGGGTGTACTCAATGTGTACGAGCTTGC
CCCACGGATGTATTAGAAATGATACCTTGGGACGGATGTAAAGCAAAGCA
AATTGCTTCTGCTCCAAGAACAGAGGACTGTGTTGGTTGTAAGCGATGTG
AATCCGCCTGTCCAACGGATTTCTTGAGTGTTCGAGTTTATTTATGGCAT
GAAACAACCCGAAGCATGGGTCTAGCTTATTGATATTGATACGTTCCCGA
AAAACCCACTTGAATCCGTTTTGAATACAGTTTTTTTTTTACCGATTACC
GACAAAAACCCGTACTCGAAA