CV712521

Overview
NameCV712521
Unique NameCV712521
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: NU4LC_ANASP (NAD(P)H-quinone oxidoreductase subunit 4L OS=Anabaena sp. (strain PCC 7120) GN=ndhE PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.441e-13
Identity = 41/94 (43.62%), Postives = 53/94 (56.38%), Query Frame = 1
Query:   16 YLVLSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSRQLKGDXXXXXXXXXXXXXXXXXXXXXXXXYRNRKSTRINQSTLL 297
            +L+L+A LF IGIYGLITSRN VR LM +EL+LNAVN+N + FS++ DS  +KG                         YRNR +  + Q  LL
Sbjct:    6 FLLLAAALFCIGIYGLITSRNAVRVLMSIELLLNAVNLNLMAFSNYLDSTLIKGQVFTVFVITVAAAEAAVGLAIVLAIYRNRDTVDMEQFNLL 99          
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: NU4LC_SYNY3 (NAD(P)H-quinone oxidoreductase subunit 4L OS=Synechocystis sp. (strain PCC 6803) GN=ndhE PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.575e-13
Identity = 40/93 (43.01%), Postives = 53/93 (56.99%), Query Frame = 1
Query:   19 LVLSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSRQLKGDXXXXXXXXXXXXXXXXXXXXXXXXYRNRKSTRINQSTLL 297
            L+L+A LF IGIYGLITSRN VR LM +EL+LNAVN+N + FS++ D   ++G                         YRNR++T + Q  LL
Sbjct:    9 LILAAALFCIGIYGLITSRNAVRVLMSIELLLNAVNLNLMGFSNYLDPSNIRGQVFAIFVITIAAAEAAVGLAIVLAIYRNRETTDMEQFNLL 101          
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: NU4LC_PLEBO (NAD(P)H-quinone oxidoreductase subunit 4L OS=Plectonema boryanum GN=ndhE PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.292e-12
Identity = 37/94 (39.36%), Postives = 54/94 (57.45%), Query Frame = 1
Query:   16 YLVLSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSRQLKGDXXXXXXXXXXXXXXXXXXXXXXXXYRNRKSTRINQSTLL 297
            +L+++A LF IG+YGL+TSRN VR LM +EL+LNAVN+N + FS++ D +++KG                         YRNR +  + Q  LL
Sbjct:    6 FLLIAAALFCIGVYGLVTSRNAVRVLMSIELMLNAVNLNLMAFSNYLDPQEIKGQMFTIFVITIAAAEAAVGLAIVLAIYRNRDTVDMEQFNLL 99          
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: NU4LC_ANTFO (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Anthoceros formosae GN=ndhE PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.292e-12
Identity = 40/88 (45.45%), Postives = 50/88 (56.82%), Query Frame = 1
Query:   19 LVLSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSRQLKGDXXXXXXXXXXXXXXXXXXXXXXXXYRNRKSTRIN 282
            L+  A+ F IGI GLITSRNMVRA MCLE I NAVN+N V  S+  D+ ++KG+                        YRNRKSTR++
Sbjct:    6 LIAGAFSFCIGISGLITSRNMVRAPMCLESIFNAVNVNSVVSSNTLDAEEIKGEIFAIFVIAIAAAEAAIGLSIALAIYRNRKSTRVD 93          
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: NU4LC_SYNJA (NAD(P)H-quinone oxidoreductase subunit 4L OS=Synechococcus sp. (strain JA-3-3Ab) GN=ndhE PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.759e-12
Identity = 39/94 (41.49%), Postives = 52/94 (55.32%), Query Frame = 1
Query:   16 YLVLSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSRQLKGDXXXXXXXXXXXXXXXXXXXXXXXXYRNRKSTRINQSTLL 297
            +LV++A LF IGIYGLI SRN +R LM +EL+LNAVN+NF+ FS+F DS  ++G                         YRNR +  +    LL
Sbjct:    7 FLVVAAILFCIGIYGLIVSRNAIRVLMSIELMLNAVNLNFMAFSNFVDSGLIRGQVFSVFVITVAAAEAAVGLAIVLGIYRNRATIDMESFNLL 100          
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: NU4LC_PAUCH (NAD(P)H-quinone oxidoreductase subunit 4L, organellar chromatophore OS=Paulinella chromatophora GN=ndhE PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.866e-11
Identity = 37/94 (39.36%), Postives = 51/94 (54.26%), Query Frame = 1
Query:   16 YLVLSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSRQLKGDXXXXXXXXXXXXXXXXXXXXXXXXYRNRKSTRINQSTLL 297
            YL L+A LF IG++GLI SRN VR LM +EL+LNAVNIN + FS++ D   ++G                         YRNR++  + +  LL
Sbjct:    8 YLTLAAVLFCIGVWGLINSRNAVRVLMSIELMLNAVNINLMAFSNYLDGELIRGQVFAIFVITVAAAEAAVGLAILLSLYRNRQTVDMERFNLL 101          
The following BLAST results are available for this feature:
BLAST of CV712521 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
NU4LC_ANASP4.441e-1343.62NAD(P)H-quinone oxidoreductase subunit 4L OS=Anaba... [more]
NU4LC_SYNY37.575e-1343.01NAD(P)H-quinone oxidoreductase subunit 4L OS=Synec... [more]
NU4LC_PLEBO1.292e-1239.36NAD(P)H-quinone oxidoreductase subunit 4L OS=Plect... [more]
NU4LC_ANTFO1.292e-1245.45NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_SYNJA3.759e-1241.49NAD(P)H-quinone oxidoreductase subunit 4L OS=Synec... [more]
NU4LC_PAUCH1.866e-1139.36NAD(P)H-quinone oxidoreductase subunit 4L, organel... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I03_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712521 ID=CV712521; Name=CV712521; organism=Citrus sinensis; type=EST; length=871bp
CCCCCCTCGAGCATGTACTTGGTTTTGAGTGCCTATTTATTTTCGATTGG
CATCTATGGCTTGATTACGAGCCGAAATATGGTTCGGGCCTTGATGTGCC
TTGAACTTATACTAAATGCAGTTAATATCAATTTTGTAACATTCTCTGAT
TTTTTTGATAGTCGACAATTAAAAGGAGATATTTTTTCAATTTTTGTTAT
AGCTATTGCAGCCGCTGAAGCAGCTATCGGATCAGCTATTGTTTCGTCAA
TTTATCGTAACAGAAAATCGACGCGTATCAATCAATCGACTTTGTTGAAT
AAGTAGTATTTATAAATCATAATATTCCTAAATTGAATTTAGGATATAGA
ATATGCCCTAATTTCGATCCTGTTTGTGAAACTGTAAGAAATCAAAGTAT
CTTTGTTCCCTTGATCCAGAAGTGGATTAATTAGCAAAATTATGGTAAAT
CATTGATTCATCTGGTGTTTAAATATGACATTTCAAAATTGACTAGATCG
AAAATGAAAAAGTTCAAAACAAAAATAGATAGATCCAATGTCACATTCAG
TAAAGATTTATGATACATGTATAGGGTGTACTCAATGTGTACGAGCTTGC
CCCACGGATGTATTAGAAATGATACCTTGGGACGGATGTAAAGCAAAGCA
AATTGCTTCTGCTCCAAGAACAGAGGACTGTGTTGGTTGTAAGCGATGTG
AATCCGCCTGTCCAACGGATTTCTTGAGTGTTCGAGTTTATTTATGGCAT
GAAACAACCCGAAGCATGGGTCTAGCTTATTGATATTGATACGTTCCCGA
AAAACCCACTTGAATCCGTTTTGAATACAGTTTTTTTTTTACCGATTACC
GACAAAAACCCGTACTCGAAA
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