CV712521

Overview
NameCV712521
Unique NameCV712521
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_LACSA (Photosystem I iron-sulfur center OS=Lactuca sativa GN=psaC PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.672e-44
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 1
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMG+AY
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGIAY 81          
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_HELAN (Photosystem I iron-sulfur center OS=Helianthus annuus GN=psaC PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.672e-44
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 1
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMG+AY
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGIAY 81          
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_PHAAO (Photosystem I iron-sulfur center OS=Phalaenopsis aphrodite subsp. formosana GN=psaC PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.184e-44
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 1
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGL+Y
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLSY 81          
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_SPIOL (Photosystem I iron-sulfur center OS=Spinacia oleracea GN=psaC PE=1 SV=3)

HSP 1 Score: 179.104 bits (453), Expect = 2.852e-44
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 1
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGL Y
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLGY 81          
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_LIRTU (Photosystem I iron-sulfur center OS=Liriodendron tulipifera GN=psaC PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.725e-44
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 1
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIA APRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIAPAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 81          
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_PINKO (Photosystem I iron-sulfur center OS=Pinus koraiensis GN=psaC PE=3 SV=3)

HSP 1 Score: 177.948 bits (450), Expect = 6.353e-44
Identity = 79/81 (97.53%), Postives = 81/81 (100.00%), Query Frame = 1
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            M+HSVKIYDTCIGCTQCVRACPTDVLEMIPW+GCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Sbjct:    1 MAHSVKIYDTCIGCTQCVRACPTDVLEMIPWEGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 81          
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_PHAVU (Photosystem I iron-sulfur center OS=Phaseolus vulgaris GN=psaC PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 6.353e-44
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 1
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPW GCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 81          
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_PEA (Photosystem I iron-sulfur center OS=Pisum sativum GN=psaC PE=1 SV=3)

HSP 1 Score: 177.948 bits (450), Expect = 6.353e-44
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 1
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPW GCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 81          
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_CYCTA (Photosystem I iron-sulfur center OS=Cycas taitungensis GN=psaC PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 6.353e-44
Identity = 79/81 (97.53%), Postives = 81/81 (100.00%), Query Frame = 1
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            M+HSVKIYDTCIGCTQCVRACPTDVLEMIPW+GCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Sbjct:    1 MAHSVKIYDTCIGCTQCVRACPTDVLEMIPWEGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 81          
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_CUCSA (Photosystem I iron-sulfur center OS=Cucumis sativus GN=psaC PE=1 SV=3)

HSP 1 Score: 177.948 bits (450), Expect = 6.353e-44
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 1
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPW GCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 81          
The following BLAST results are available for this feature:
BLAST of CV712521 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
PSAC_LACSA1.672e-4498.77Photosystem I iron-sulfur center OS=Lactuca sativa... [more]
PSAC_HELAN1.672e-4498.77Photosystem I iron-sulfur center OS=Helianthus ann... [more]
PSAC_PHAAO2.184e-4498.77Photosystem I iron-sulfur center OS=Phalaenopsis a... [more]
PSAC_SPIOL2.852e-4498.77Photosystem I iron-sulfur center OS=Spinacia olera... [more]
PSAC_LIRTU3.725e-4498.77Photosystem I iron-sulfur center OS=Liriodendron t... [more]
PSAC_PINKO6.353e-4497.53Photosystem I iron-sulfur center OS=Pinus koraiens... [more]
PSAC_PHAVU6.353e-4498.77Photosystem I iron-sulfur center OS=Phaseolus vulg... [more]
PSAC_PEA6.353e-4498.77Photosystem I iron-sulfur center OS=Pisum sativum ... [more]
PSAC_CYCTA6.353e-4497.53Photosystem I iron-sulfur center OS=Cycas taitunge... [more]
PSAC_CUCSA6.353e-4498.77Photosystem I iron-sulfur center OS=Cucumis sativu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I03_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712521 ID=CV712521; Name=CV712521; organism=Citrus sinensis; type=EST; length=871bp
CCCCCCTCGAGCATGTACTTGGTTTTGAGTGCCTATTTATTTTCGATTGG
CATCTATGGCTTGATTACGAGCCGAAATATGGTTCGGGCCTTGATGTGCC
TTGAACTTATACTAAATGCAGTTAATATCAATTTTGTAACATTCTCTGAT
TTTTTTGATAGTCGACAATTAAAAGGAGATATTTTTTCAATTTTTGTTAT
AGCTATTGCAGCCGCTGAAGCAGCTATCGGATCAGCTATTGTTTCGTCAA
TTTATCGTAACAGAAAATCGACGCGTATCAATCAATCGACTTTGTTGAAT
AAGTAGTATTTATAAATCATAATATTCCTAAATTGAATTTAGGATATAGA
ATATGCCCTAATTTCGATCCTGTTTGTGAAACTGTAAGAAATCAAAGTAT
CTTTGTTCCCTTGATCCAGAAGTGGATTAATTAGCAAAATTATGGTAAAT
CATTGATTCATCTGGTGTTTAAATATGACATTTCAAAATTGACTAGATCG
AAAATGAAAAAGTTCAAAACAAAAATAGATAGATCCAATGTCACATTCAG
TAAAGATTTATGATACATGTATAGGGTGTACTCAATGTGTACGAGCTTGC
CCCACGGATGTATTAGAAATGATACCTTGGGACGGATGTAAAGCAAAGCA
AATTGCTTCTGCTCCAAGAACAGAGGACTGTGTTGGTTGTAAGCGATGTG
AATCCGCCTGTCCAACGGATTTCTTGAGTGTTCGAGTTTATTTATGGCAT
GAAACAACCCGAAGCATGGGTCTAGCTTATTGATATTGATACGTTCCCGA
AAAACCCACTTGAATCCGTTTTGAATACAGTTTTTTTTTTACCGATTACC
GACAAAAACCCGTACTCGAAA
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