CV712521

Overview
NameCV712521
Unique NameCV712521
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_PINTH (Photosystem I iron-sulfur center OS=Pinus thunbergii GN=psaC PE=3 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 1.849e-43
Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 1
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            M+HSVKIYDTCIGCTQCVRACPTDVLEMIPW+GCKAKQIASAPRTEDC GCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Sbjct:    1 MAHSVKIYDTCIGCTQCVRACPTDVLEMIPWEGCKAKQIASAPRTEDCAGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 81          
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_ILLOL (Photosystem I iron-sulfur center OS=Illicium oligandrum GN=psaC PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.849e-43
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 1
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIA APRTEDCVGCKRCESACPTDFLSVRVYLW+ETTRSMGLAY
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIAPAPRTEDCVGCKRCESACPTDFLSVRVYLWYETTRSMGLAY 81          
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_PANGI (Photosystem I iron-sulfur center OS=Panax ginseng GN=psaC PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 3.153e-43
Identity = 79/81 (97.53%), Postives = 79/81 (97.53%), Query Frame = 1
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRV LWHETTRSMGL Y
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVSLWHETTRSMGLGY 81          
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_DIOEL (Photosystem I iron-sulfur center OS=Dioscorea elephantipes GN=psaC PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 3.153e-43
Identity = 78/81 (96.30%), Postives = 81/81 (100.00%), Query Frame = 1
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPW+GCKAKQIASAPRTEDCVGCKRCESACPT+FLSVRVYLWHETTRSMGL+Y
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWNGCKAKQIASAPRTEDCVGCKRCESACPTNFLSVRVYLWHETTRSMGLSY 81          
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_ARAHI (Photosystem I iron-sulfur center OS=Arabis hirsuta GN=psaC PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 4.118e-43
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 1
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYL HETTRSMGLAY
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLSHETTRSMGLAY 81          
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_DAUCA (Photosystem I iron-sulfur center OS=Daucus carota GN=psaC PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 7.024e-43
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 1
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRV LW+ETTRSMGLAY
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVSLWNETTRSMGLAY 81          
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_DRIGR (Photosystem I iron-sulfur center OS=Drimys granadensis GN=psaC PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.198e-42
Identity = 79/81 (97.53%), Postives = 79/81 (97.53%), Query Frame = 1
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIA APRTEDCVGCKRCESACPTDFLSVRVYL HETTRSMGLAY
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIAPAPRTEDCVGCKRCESACPTDFLSVRVYLCHETTRSMGLAY 81          
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_CUSGR (Photosystem I iron-sulfur center OS=Cuscuta gronovii GN=psaC PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.553e-42
Identity = 79/81 (97.53%), Postives = 79/81 (97.53%), Query Frame = 1
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYL  ETTRSMGLAY
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGAETTRSMGLAY 81          
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_CUSOB (Photosystem I iron-sulfur center OS=Cuscuta obtusiflora GN=psaC PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.947e-42
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 1
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVK+YDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYL  ETTRSMGLAY
Sbjct:    1 MSHSVKVYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGAETTRSMGLAY 81          
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_CUSRE (Photosystem I iron-sulfur center OS=Cuscuta reflexa GN=psaC PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.766e-42
Identity = 78/81 (96.30%), Postives = 78/81 (96.30%), Query Frame = 1
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWD CKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYL HETTRSMGL Y
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDRCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGHETTRSMGLTY 81          
The following BLAST results are available for this feature:
BLAST of CV712521 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
PSAC_PINTH1.849e-4396.30Photosystem I iron-sulfur center OS=Pinus thunberg... [more]
PSAC_ILLOL1.849e-4397.53Photosystem I iron-sulfur center OS=Illicium oliga... [more]
PSAC_PANGI3.153e-4397.53Photosystem I iron-sulfur center OS=Panax ginseng ... [more]
PSAC_DIOEL3.153e-4396.30Photosystem I iron-sulfur center OS=Dioscorea elep... [more]
PSAC_ARAHI4.118e-4398.77Photosystem I iron-sulfur center OS=Arabis hirsuta... [more]
PSAC_DAUCA7.024e-4397.53Photosystem I iron-sulfur center OS=Daucus carota ... [more]
PSAC_DRIGR1.198e-4297.53Photosystem I iron-sulfur center OS=Drimys granade... [more]
PSAC_CUSGR4.553e-4297.53Photosystem I iron-sulfur center OS=Cuscuta gronov... [more]
PSAC_CUSOB5.947e-4296.30Photosystem I iron-sulfur center OS=Cuscuta obtusi... [more]
PSAC_CUSRE7.766e-4296.30Photosystem I iron-sulfur center OS=Cuscuta reflex... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I03_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712521 ID=CV712521; Name=CV712521; organism=Citrus sinensis; type=EST; length=871bp
CCCCCCTCGAGCATGTACTTGGTTTTGAGTGCCTATTTATTTTCGATTGG
CATCTATGGCTTGATTACGAGCCGAAATATGGTTCGGGCCTTGATGTGCC
TTGAACTTATACTAAATGCAGTTAATATCAATTTTGTAACATTCTCTGAT
TTTTTTGATAGTCGACAATTAAAAGGAGATATTTTTTCAATTTTTGTTAT
AGCTATTGCAGCCGCTGAAGCAGCTATCGGATCAGCTATTGTTTCGTCAA
TTTATCGTAACAGAAAATCGACGCGTATCAATCAATCGACTTTGTTGAAT
AAGTAGTATTTATAAATCATAATATTCCTAAATTGAATTTAGGATATAGA
ATATGCCCTAATTTCGATCCTGTTTGTGAAACTGTAAGAAATCAAAGTAT
CTTTGTTCCCTTGATCCAGAAGTGGATTAATTAGCAAAATTATGGTAAAT
CATTGATTCATCTGGTGTTTAAATATGACATTTCAAAATTGACTAGATCG
AAAATGAAAAAGTTCAAAACAAAAATAGATAGATCCAATGTCACATTCAG
TAAAGATTTATGATACATGTATAGGGTGTACTCAATGTGTACGAGCTTGC
CCCACGGATGTATTAGAAATGATACCTTGGGACGGATGTAAAGCAAAGCA
AATTGCTTCTGCTCCAAGAACAGAGGACTGTGTTGGTTGTAAGCGATGTG
AATCCGCCTGTCCAACGGATTTCTTGAGTGTTCGAGTTTATTTATGGCAT
GAAACAACCCGAAGCATGGGTCTAGCTTATTGATATTGATACGTTCCCGA
AAAACCCACTTGAATCCGTTTTGAATACAGTTTTTTTTTTACCGATTACC
GACAAAAACCCGTACTCGAAA
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