CV712521

Overview
NameCV712521
Unique NameCV712521
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_ACOCL (Photosystem I iron-sulfur center OS=Acorus calamus GN=psaC PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.766e-42
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 1 
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYL +ETTRSMGL Y
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGNETTRSMGLPY 81
[Close]
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_CHLSC (Photosystem I iron-sulfur center OS=Chloranthus spicatus GN=psaC PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.014e-41
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 1 
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIA APRTEDCVGCKRCESACPTDFLSVRVYL +ETTRSMGLAY
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIAPAPRTEDCVGCKRCESACPTDFLSVRVYLSNETTRSMGLAY 81
[Close]
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_OLTVI (Photosystem I iron-sulfur center OS=Oltmannsiellopsis viridis GN=psaC PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.730e-41
Identity = 77/81 (95.06%), Postives = 78/81 (96.30%), Query Frame = 1 
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEM+PWDGCKA QIASAPRTEDCVGCKRCESACPTDFLSVRVYL  ETTRSMGLAY
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKASQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGSETTRSMGLAY 81
[Close]
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_LEPTE (Photosystem I iron-sulfur center OS=Leptosira terrestris GN=psaC PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.730e-41
Identity = 77/81 (95.06%), Postives = 78/81 (96.30%), Query Frame = 1 
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEM+PWDGCKA QIASAPRTEDCVGCKRCESACPTDFLSVRVYL  ETTRSMGLAY
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKASQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGSETTRSMGLAY 81
[Close]
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_STAPU (Photosystem I iron-sulfur center OS=Staurastrum punctulatum GN=psaC PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.951e-41
Identity = 77/81 (95.06%), Postives = 78/81 (96.30%), Query Frame = 1 
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            M+HSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKA QIASAPRTEDCVGCKRCESACPTDFLSVRVYL  ETTRSMGLAY
Sbjct:    1 MAHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKASQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGSETTRSMGLAY 81
[Close]
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_ZYGCR (Photosystem I iron-sulfur center OS=Zygnema circumcarinatum GN=psaC PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.854e-41
Identity = 77/81 (95.06%), Postives = 78/81 (96.30%), Query Frame = 1 
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            M+HSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKA QIASAPRTEDCVGCKRCESACPTDFLSVRVYL  ETTRSMGLAY
Sbjct:    1 MAHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKASQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGPETTRSMGLAY 81
[Close]
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_CHLVU (Photosystem I iron-sulfur center OS=Chlorella vulgaris GN=psaC PE=3 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 3.854e-41
Identity = 76/81 (93.83%), Postives = 78/81 (96.30%), Query Frame = 1 
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSH+VKIYDTCIGCTQCVRACPTDVLEM+PWDGCKA QIASAPRTEDCVGCKRCESACPTDFLSVRVYL  ETTRSMGLAY
Sbjct:    1 MSHTVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKASQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGSETTRSMGLAY 81
[Close]
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_ANGEV (Photosystem I iron-sulfur center OS=Angiopteris evecta GN=psaC PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.854e-41
Identity = 77/81 (95.06%), Postives = 78/81 (96.30%), Query Frame = 1 
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            M+HSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKA QIASAPRTEDCVGCKRCESACPTDFLSVRVYL  ETTRSMGLAY
Sbjct:    1 MAHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKANQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGAETTRSMGLAY 81
[Close]
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_ADICA (Photosystem I iron-sulfur center OS=Adiantum capillus-veneris GN=psaC PE=2 SV=3)

HSP 1 Score: 168.703 bits (426), Expect = 3.854e-41
Identity = 77/81 (95.06%), Postives = 78/81 (96.30%), Query Frame = 1 
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            M+HSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKA QIASAPRTEDCVGCKRCESACPTDFLSVRVYL  ETTRSMGLAY
Sbjct:    1 MAHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKANQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGAETTRSMGLAY 81
[Close]
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_WHEAT (Photosystem I iron-sulfur center OS=Triticum aestivum GN=psaC PE=3 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 5.034e-41
Identity = 77/81 (95.06%), Postives = 78/81 (96.30%), Query Frame = 1 
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYL  ETTRSM L+Y
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGPETTRSMALSY 81
The following BLAST results are available for this feature:
BLAST of CV712521 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
PSAC_ACOCL7.766e-4296.30Photosystem I iron-sulfur center OS=Acorus calamus... [more]
PSAC_CHLSC1.014e-4196.30Photosystem I iron-sulfur center OS=Chloranthus sp... [more]
PSAC_OLTVI1.730e-4195.06Photosystem I iron-sulfur center OS=Oltmannsiellop... [more]
PSAC_LEPTE1.730e-4195.06Photosystem I iron-sulfur center OS=Leptosira terr... [more]
PSAC_STAPU2.951e-4195.06Photosystem I iron-sulfur center OS=Staurastrum pu... [more]
PSAC_ZYGCR3.854e-4195.06Photosystem I iron-sulfur center OS=Zygnema circum... [more]
PSAC_CHLVU3.854e-4193.83Photosystem I iron-sulfur center OS=Chlorella vulg... [more]
PSAC_ANGEV3.854e-4195.06Photosystem I iron-sulfur center OS=Angiopteris ev... [more]
PSAC_ADICA3.854e-4195.06Photosystem I iron-sulfur center OS=Adiantum capil... [more]
PSAC_WHEAT5.034e-4195.06Photosystem I iron-sulfur center OS=Triticum aesti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I03_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712521 ID=CV712521; Name=CV712521; organism=Citrus sinensis; type=EST; length=871bp
CCCCCCTCGAGCATGTACTTGGTTTTGAGTGCCTATTTATTTTCGATTGG
CATCTATGGCTTGATTACGAGCCGAAATATGGTTCGGGCCTTGATGTGCC
TTGAACTTATACTAAATGCAGTTAATATCAATTTTGTAACATTCTCTGAT
TTTTTTGATAGTCGACAATTAAAAGGAGATATTTTTTCAATTTTTGTTAT
AGCTATTGCAGCCGCTGAAGCAGCTATCGGATCAGCTATTGTTTCGTCAA
TTTATCGTAACAGAAAATCGACGCGTATCAATCAATCGACTTTGTTGAAT
AAGTAGTATTTATAAATCATAATATTCCTAAATTGAATTTAGGATATAGA
ATATGCCCTAATTTCGATCCTGTTTGTGAAACTGTAAGAAATCAAAGTAT
CTTTGTTCCCTTGATCCAGAAGTGGATTAATTAGCAAAATTATGGTAAAT
CATTGATTCATCTGGTGTTTAAATATGACATTTCAAAATTGACTAGATCG
AAAATGAAAAAGTTCAAAACAAAAATAGATAGATCCAATGTCACATTCAG
TAAAGATTTATGATACATGTATAGGGTGTACTCAATGTGTACGAGCTTGC
CCCACGGATGTATTAGAAATGATACCTTGGGACGGATGTAAAGCAAAGCA
AATTGCTTCTGCTCCAAGAACAGAGGACTGTGTTGGTTGTAAGCGATGTG
AATCCGCCTGTCCAACGGATTTCTTGAGTGTTCGAGTTTATTTATGGCAT
GAAACAACCCGAAGCATGGGTCTAGCTTATTGATATTGATACGTTCCCGA
AAAACCCACTTGAATCCGTTTTGAATACAGTTTTTTTTTTACCGATTACC
GACAAAAACCCGTACTCGAAA
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