CV712521

Overview
NameCV712521
Unique NameCV712521
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_SORBI (Photosystem I iron-sulfur center OS=Sorghum bicolor GN=psaC PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 5.034e-41
Identity = 77/81 (95.06%), Postives = 78/81 (96.30%), Query Frame = 1 
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYL  ETTRSM L+Y
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLRSETTRSMALSY 81
[Close]
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_SECCE (Photosystem I iron-sulfur center OS=Secale cereale GN=psaC PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 5.034e-41
Identity = 77/81 (95.06%), Postives = 78/81 (96.30%), Query Frame = 1 
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYL  ETTRSM L+Y
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGPETTRSMALSY 81
[Close]
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_SACOF (Photosystem I iron-sulfur center OS=Saccharum officinarum GN=psaC PE=3 SV=3)

HSP 1 Score: 168.318 bits (425), Expect = 5.034e-41
Identity = 77/81 (95.06%), Postives = 78/81 (96.30%), Query Frame = 1 
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYL  ETTRSM L+Y
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGPETTRSMALSY 81
[Close]
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_SACHY (Photosystem I iron-sulfur center OS=Saccharum hybrid GN=psaC PE=3 SV=3)

HSP 1 Score: 168.318 bits (425), Expect = 5.034e-41
Identity = 77/81 (95.06%), Postives = 78/81 (96.30%), Query Frame = 1 
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYL  ETTRSM L+Y
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGPETTRSMALSY 81
[Close]
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_PSEPI (Photosystem I iron-sulfur center OS=Pseudoroegneria spicata GN=psaC PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 5.034e-41
Identity = 77/81 (95.06%), Postives = 78/81 (96.30%), Query Frame = 1 
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYL  ETTRSM L+Y
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGPETTRSMALSY 81
[Close]
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_PHYPA (Photosystem I iron-sulfur center OS=Physcomitrella patens GN=psaC PE=3 SV=3)

HSP 1 Score: 168.318 bits (425), Expect = 5.034e-41
Identity = 76/81 (93.83%), Postives = 78/81 (96.30%), Query Frame = 1 
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            M+HSVKIYDTCIGCTQCVRACPTDVLEM+PWDGCKA QIASAPRTEDCVGCKRCESACPTDFLSVRVYL  ETTRSMGLAY
Sbjct:    1 MAHSVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKASQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGAETTRSMGLAY 81
[Close]
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_ORYSJ (Photosystem I iron-sulfur center OS=Oryza sativa subsp. japonica GN=psaC PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 5.034e-41
Identity = 77/81 (95.06%), Postives = 78/81 (96.30%), Query Frame = 1 
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYL  ETTRSM L+Y
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGPETTRSMALSY 81
[Close]
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_ORYSI (Photosystem I iron-sulfur center OS=Oryza sativa subsp. indica GN=psaC PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 5.034e-41
Identity = 77/81 (95.06%), Postives = 78/81 (96.30%), Query Frame = 1 
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYL  ETTRSM L+Y
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGPETTRSMALSY 81
[Close]
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_ORYSA (Photosystem I iron-sulfur center OS=Oryza sativa GN=psaC PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 5.034e-41
Identity = 77/81 (95.06%), Postives = 78/81 (96.30%), Query Frame = 1 
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYL  ETTRSM L+Y
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGPETTRSMALSY 81
[Close]
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_ORYNI (Photosystem I iron-sulfur center OS=Oryza nivara GN=psaC PE=3 SV=3)

HSP 1 Score: 168.318 bits (425), Expect = 5.034e-41
Identity = 77/81 (95.06%), Postives = 78/81 (96.30%), Query Frame = 1 
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYL  ETTRSM L+Y
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGPETTRSMALSY 81
The following BLAST results are available for this feature:
BLAST of CV712521 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
PSAC_SORBI5.034e-4195.06Photosystem I iron-sulfur center OS=Sorghum bicolo... [more]
PSAC_SECCE5.034e-4195.06Photosystem I iron-sulfur center OS=Secale cereale... [more]
PSAC_SACOF5.034e-4195.06Photosystem I iron-sulfur center OS=Saccharum offi... [more]
PSAC_SACHY5.034e-4195.06Photosystem I iron-sulfur center OS=Saccharum hybr... [more]
PSAC_PSEPI5.034e-4195.06Photosystem I iron-sulfur center OS=Pseudoroegneri... [more]
PSAC_PHYPA5.034e-4193.83Photosystem I iron-sulfur center OS=Physcomitrella... [more]
PSAC_ORYSJ5.034e-4195.06Photosystem I iron-sulfur center OS=Oryza sativa s... [more]
PSAC_ORYSI5.034e-4195.06Photosystem I iron-sulfur center OS=Oryza sativa s... [more]
PSAC_ORYSA5.034e-4195.06Photosystem I iron-sulfur center OS=Oryza sativa G... [more]
PSAC_ORYNI5.034e-4195.06Photosystem I iron-sulfur center OS=Oryza nivara G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I03_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712521 ID=CV712521; Name=CV712521; organism=Citrus sinensis; type=EST; length=871bp
CCCCCCTCGAGCATGTACTTGGTTTTGAGTGCCTATTTATTTTCGATTGG
CATCTATGGCTTGATTACGAGCCGAAATATGGTTCGGGCCTTGATGTGCC
TTGAACTTATACTAAATGCAGTTAATATCAATTTTGTAACATTCTCTGAT
TTTTTTGATAGTCGACAATTAAAAGGAGATATTTTTTCAATTTTTGTTAT
AGCTATTGCAGCCGCTGAAGCAGCTATCGGATCAGCTATTGTTTCGTCAA
TTTATCGTAACAGAAAATCGACGCGTATCAATCAATCGACTTTGTTGAAT
AAGTAGTATTTATAAATCATAATATTCCTAAATTGAATTTAGGATATAGA
ATATGCCCTAATTTCGATCCTGTTTGTGAAACTGTAAGAAATCAAAGTAT
CTTTGTTCCCTTGATCCAGAAGTGGATTAATTAGCAAAATTATGGTAAAT
CATTGATTCATCTGGTGTTTAAATATGACATTTCAAAATTGACTAGATCG
AAAATGAAAAAGTTCAAAACAAAAATAGATAGATCCAATGTCACATTCAG
TAAAGATTTATGATACATGTATAGGGTGTACTCAATGTGTACGAGCTTGC
CCCACGGATGTATTAGAAATGATACCTTGGGACGGATGTAAAGCAAAGCA
AATTGCTTCTGCTCCAAGAACAGAGGACTGTGTTGGTTGTAAGCGATGTG
AATCCGCCTGTCCAACGGATTTCTTGAGTGTTCGAGTTTATTTATGGCAT
GAAACAACCCGAAGCATGGGTCTAGCTTATTGATATTGATACGTTCCCGA
AAAACCCACTTGAATCCGTTTTGAATACAGTTTTTTTTTTACCGATTACC
GACAAAAACCCGTACTCGAAA
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