CV712521

Overview
NameCV712521
Unique NameCV712521
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_LOLPR (Photosystem I iron-sulfur center OS=Lolium perenne GN=psaC PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 5.034e-41
Identity = 77/81 (95.06%), Postives = 78/81 (96.30%), Query Frame = 1
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYL  ETTRSM L+Y
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGPETTRSMALSY 81          
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_HORVU (Photosystem I iron-sulfur center OS=Hordeum vulgare GN=psaC PE=1 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 5.034e-41
Identity = 77/81 (95.06%), Postives = 78/81 (96.30%), Query Frame = 1
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYL  ETTRSM L+Y
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGPETTRSMALSY 81          
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_AGRST (Photosystem I iron-sulfur center OS=Agrostis stolonifera GN=psaC PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 5.034e-41
Identity = 77/81 (95.06%), Postives = 78/81 (96.30%), Query Frame = 1
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYL  ETTRSM L+Y
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGPETTRSMALSY 81          
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_AEGTA (Photosystem I iron-sulfur center OS=Aegilops tauschii GN=psaC PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 5.034e-41
Identity = 77/81 (95.06%), Postives = 78/81 (96.30%), Query Frame = 1
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYL  ETTRSM L+Y
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGPETTRSMALSY 81          
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_CHAVU (Photosystem I iron-sulfur center OS=Chara vulgaris GN=psaC PE=3 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 6.575e-41
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 1
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSH +KIYDTCIGCTQCVRACPTDVLEMIPW GCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYL  ETTRSMGLAY
Sbjct:    1 MSHKIKIYDTCIGCTQCVRACPTDVLEMIPWQGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGSETTRSMGLAY 81          
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_CHAGL (Photosystem I iron-sulfur center OS=Chaetosphaeridium globosum GN=psaC PE=3 SV=3)

HSP 1 Score: 167.933 bits (424), Expect = 6.575e-41
Identity = 76/81 (93.83%), Postives = 78/81 (96.30%), Query Frame = 1
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSH+VKIYDTCIGCTQCVRACPTDVLEMIPWDGCKA QIAS+PRTEDCVGCKRCESACPTDFLSVRVYL  ETTRSMGLAY
Sbjct:    1 MSHTVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKANQIASSPRTEDCVGCKRCESACPTDFLSVRVYLGSETTRSMGLAY 81          
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_HUPLU (Photosystem I iron-sulfur center OS=Huperzia lucidula GN=psaC PE=3 SV=3)

HSP 1 Score: 167.548 bits (423), Expect = 8.587e-41
Identity = 75/81 (92.59%), Postives = 78/81 (96.30%), Query Frame = 1
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            M+HSV+IYDTCIGCTQCVRACPTDVLEMIPWDGCKA QIASAPRTEDCVGCKRCESACPTDFLS+RVYL  ETTRSMGLAY
Sbjct:    1 MAHSVRIYDTCIGCTQCVRACPTDVLEMIPWDGCKANQIASAPRTEDCVGCKRCESACPTDFLSIRVYLGSETTRSMGLAY 81          
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_PSINU (Photosystem I iron-sulfur center OS=Psilotum nudum GN=psaC PE=3 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 1.121e-40
Identity = 76/81 (93.83%), Postives = 78/81 (96.30%), Query Frame = 1
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            M+HSVKIYDTCIGCTQCVRACPTDVLEMIPW+GCKA QIASAPRTEDCVGCKRCESACPTDFLSVRVYL  ETTRSMGLAY
Sbjct:    1 MAHSVKIYDTCIGCTQCVRACPTDVLEMIPWNGCKANQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGSETTRSMGLAY 81          
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_CUSEX (Photosystem I iron-sulfur center OS=Cuscuta exaltata GN=psaC PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.121e-40
Identity = 77/81 (95.06%), Postives = 77/81 (95.06%), Query Frame = 1
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSH VKIYDTCIGCTQCVRACPTDVLEMIPWD CKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYL  ETTRSMGLAY
Sbjct:    1 MSHFVKIYDTCIGCTQCVRACPTDVLEMIPWDRCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGRETTRSMGLAY 81          
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_CHLAT (Photosystem I iron-sulfur center OS=Chlorokybus atmophyticus GN=psaC PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.121e-40
Identity = 75/81 (92.59%), Postives = 78/81 (96.30%), Query Frame = 1
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            M+HSVKIYDTCIGCTQCVRACPTDVLEM+PWDGC+A QIASAPRTEDCVGCKRCESACPTDFLSVRVYL  ETTRSMGLAY
Sbjct:    1 MAHSVKIYDTCIGCTQCVRACPTDVLEMVPWDGCRANQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGAETTRSMGLAY 81          
The following BLAST results are available for this feature:
BLAST of CV712521 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
PSAC_LOLPR5.034e-4195.06Photosystem I iron-sulfur center OS=Lolium perenne... [more]
PSAC_HORVU5.034e-4195.06Photosystem I iron-sulfur center OS=Hordeum vulgar... [more]
PSAC_AGRST5.034e-4195.06Photosystem I iron-sulfur center OS=Agrostis stolo... [more]
PSAC_AEGTA5.034e-4195.06Photosystem I iron-sulfur center OS=Aegilops tausc... [more]
PSAC_CHAVU6.575e-4193.83Photosystem I iron-sulfur center OS=Chara vulgaris... [more]
PSAC_CHAGL6.575e-4193.83Photosystem I iron-sulfur center OS=Chaetosphaerid... [more]
PSAC_HUPLU8.587e-4192.59Photosystem I iron-sulfur center OS=Huperzia lucid... [more]
PSAC_PSINU1.121e-4093.83Photosystem I iron-sulfur center OS=Psilotum nudum... [more]
PSAC_CUSEX1.121e-4095.06Photosystem I iron-sulfur center OS=Cuscuta exalta... [more]
PSAC_CHLAT1.121e-4092.59Photosystem I iron-sulfur center OS=Chlorokybus at... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I03_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712521 ID=CV712521; Name=CV712521; organism=Citrus sinensis; type=EST; length=871bp
CCCCCCTCGAGCATGTACTTGGTTTTGAGTGCCTATTTATTTTCGATTGG
CATCTATGGCTTGATTACGAGCCGAAATATGGTTCGGGCCTTGATGTGCC
TTGAACTTATACTAAATGCAGTTAATATCAATTTTGTAACATTCTCTGAT
TTTTTTGATAGTCGACAATTAAAAGGAGATATTTTTTCAATTTTTGTTAT
AGCTATTGCAGCCGCTGAAGCAGCTATCGGATCAGCTATTGTTTCGTCAA
TTTATCGTAACAGAAAATCGACGCGTATCAATCAATCGACTTTGTTGAAT
AAGTAGTATTTATAAATCATAATATTCCTAAATTGAATTTAGGATATAGA
ATATGCCCTAATTTCGATCCTGTTTGTGAAACTGTAAGAAATCAAAGTAT
CTTTGTTCCCTTGATCCAGAAGTGGATTAATTAGCAAAATTATGGTAAAT
CATTGATTCATCTGGTGTTTAAATATGACATTTCAAAATTGACTAGATCG
AAAATGAAAAAGTTCAAAACAAAAATAGATAGATCCAATGTCACATTCAG
TAAAGATTTATGATACATGTATAGGGTGTACTCAATGTGTACGAGCTTGC
CCCACGGATGTATTAGAAATGATACCTTGGGACGGATGTAAAGCAAAGCA
AATTGCTTCTGCTCCAAGAACAGAGGACTGTGTTGGTTGTAAGCGATGTG
AATCCGCCTGTCCAACGGATTTCTTGAGTGTTCGAGTTTATTTATGGCAT
GAAACAACCCGAAGCATGGGTCTAGCTTATTGATATTGATACGTTCCCGA
AAAACCCACTTGAATCCGTTTTGAATACAGTTTTTTTTTTACCGATTACC
GACAAAAACCCGTACTCGAAA
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