CV712521

Overview
NameCV712521
Unique NameCV712521
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_OSTTA (Photosystem I iron-sulfur center OS=Ostreococcus tauri GN=psaC PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.465e-40
Identity = 75/81 (92.59%), Postives = 78/81 (96.30%), Query Frame = 1
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSH+VKIYDTCIGCTQCVRACPTDVLEM+PWDGCKA QIASAPRTEDCVGCKRCE+ACPTDFLSVRVYL  ETTRSMGLAY
Sbjct:    1 MSHAVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDCVGCKRCEAACPTDFLSVRVYLGSETTRSMGLAY 81          
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_GNEPA (Photosystem I iron-sulfur center OS=Gnetum parvifolium GN=psaC PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.465e-40
Identity = 74/81 (91.36%), Postives = 80/81 (98.77%), Query Frame = 1
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            M+HSVKIYDTCIGCTQCVRACPTDVLEM+PW+GC+AKQIASAPRTEDCVGCKRCESACPTD+LSVRVYL +ETTRSMGLAY
Sbjct:    1 MAHSVKIYDTCIGCTQCVRACPTDVLEMVPWNGCRAKQIASAPRTEDCVGCKRCESACPTDYLSVRVYLRNETTRSMGLAY 81          
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_WELMI (Photosystem I iron-sulfur center OS=Welwitschia mirabilis GN=psaC PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.913e-40
Identity = 74/81 (91.36%), Postives = 79/81 (97.53%), Query Frame = 1
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            M+HSVKIYDTCIGCTQCVRACPTDVLEM+PW+GC+AKQIASAPRTEDCVGCKRCESACPTD+LSVRVYL  ETTRSMGLAY
Sbjct:    1 MAHSVKIYDTCIGCTQCVRACPTDVLEMVPWNGCRAKQIASAPRTEDCVGCKRCESACPTDYLSVRVYLRQETTRSMGLAY 81          
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_NEPOL (Photosystem I iron-sulfur center OS=Nephroselmis olivacea GN=psaC PE=3 SV=3)

HSP 1 Score: 166.392 bits (420), Expect = 1.913e-40
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 1
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEM+PW GCKA QIASAPRTEDCVGCKRCESACPTDFLSVRVYL  ETTRSMGLAY
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMVPWGGCKAAQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGAETTRSMGLAY 81          
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_MAIZE (Photosystem I iron-sulfur center OS=Zea mays GN=psaC PE=3 SV=3)

HSP 1 Score: 166.392 bits (420), Expect = 1.913e-40
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 1
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCT CVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYL  ETTRSM L+Y
Sbjct:    1 MSHSVKIYDTCIGCTHCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGPETTRSMALSY 81          
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_PORYE (Photosystem I iron-sulfur center OS=Porphyra yezoensis GN=psaC PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.498e-40
Identity = 73/81 (90.12%), Postives = 78/81 (96.30%), Query Frame = 1
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            M+HSVK+YDTCIGCTQCVRACP DVLEM+PWDGCKAKQIASAPRTEDC+GCKRCE+ACPTDFLSVRVYL  ETTRSMGLAY
Sbjct:    1 MAHSVKVYDTCIGCTQCVRACPCDVLEMVPWDGCKAKQIASAPRTEDCIGCKRCETACPTDFLSVRVYLGAETTRSMGLAY 81          
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_PORPU (Photosystem I iron-sulfur center OS=Porphyra purpurea GN=psaC PE=3 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 2.498e-40
Identity = 73/81 (90.12%), Postives = 78/81 (96.30%), Query Frame = 1
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            M+HSVK+YDTCIGCTQCVRACP DVLEM+PWDGCKAKQIASAPRTEDC+GCKRCE+ACPTDFLSVRVYL  ETTRSMGLAY
Sbjct:    1 MAHSVKVYDTCIGCTQCVRACPCDVLEMVPWDGCKAKQIASAPRTEDCIGCKRCETACPTDFLSVRVYLGAETTRSMGLAY 81          
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_MASLA (Photosystem I iron-sulfur center OS=Mastigocladus laminosus GN=psaC PE=3 SV=3)

HSP 1 Score: 166.007 bits (419), Expect = 2.498e-40
Identity = 73/81 (90.12%), Postives = 79/81 (97.53%), Query Frame = 1
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSH+VKIYDTCIGCTQCVRACPTDVLEM+PWDGCKA+QIAS+PRTEDCVGCKRCE+ACPTDFLS+RVYL  ETTRSMGLAY
Sbjct:    1 MSHTVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKAQQIASSPRTEDCVGCKRCETACPTDFLSIRVYLGAETTRSMGLAY 81          
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_CERDE (Photosystem I iron-sulfur center OS=Ceratophyllum demersum GN=psaC PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.498e-40
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 1
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            M+HSVKIY TCIGCTQCVRACPTDVLEMIPWDGCKAKQIA APRTEDCVGCKRCESACPTDFLSVRVYL  ETTRSMGLAY
Sbjct:    1 MAHSVKIYHTCIGCTQCVRACPTDVLEMIPWDGCKAKQIAPAPRTEDCVGCKRCESACPTDFLSVRVYLGPETTRSMGLAY 81          
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_ANTFO (Photosystem I iron-sulfur center OS=Anthoceros formosae GN=psaC PE=2 SV=3)

HSP 1 Score: 166.007 bits (419), Expect = 2.498e-40
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 1
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            M+HSVKIYDTCIGCTQCVRACPTDVLEMI WDGCKA QIASAPRTEDCVGCKRCESACPTDFLSVRVYL  ETTRSMGLAY
Sbjct:    1 MAHSVKIYDTCIGCTQCVRACPTDVLEMISWDGCKANQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGSETTRSMGLAY 81          
The following BLAST results are available for this feature:
BLAST of CV712521 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
PSAC_OSTTA1.465e-4092.59Photosystem I iron-sulfur center OS=Ostreococcus t... [more]
PSAC_GNEPA1.465e-4091.36Photosystem I iron-sulfur center OS=Gnetum parvifo... [more]
PSAC_WELMI1.913e-4091.36Photosystem I iron-sulfur center OS=Welwitschia mi... [more]
PSAC_NEPOL1.913e-4093.83Photosystem I iron-sulfur center OS=Nephroselmis o... [more]
PSAC_MAIZE1.913e-4093.83Photosystem I iron-sulfur center OS=Zea mays GN=ps... [more]
PSAC_PORYE2.498e-4090.12Photosystem I iron-sulfur center OS=Porphyra yezoe... [more]
PSAC_PORPU2.498e-4090.12Photosystem I iron-sulfur center OS=Porphyra purpu... [more]
PSAC_MASLA2.498e-4090.12Photosystem I iron-sulfur center OS=Mastigocladus ... [more]
PSAC_CERDE2.498e-4093.83Photosystem I iron-sulfur center OS=Ceratophyllum ... [more]
PSAC_ANTFO2.498e-4093.83Photosystem I iron-sulfur center OS=Anthoceros for... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I03_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712521 ID=CV712521; Name=CV712521; organism=Citrus sinensis; type=EST; length=871bp
CCCCCCTCGAGCATGTACTTGGTTTTGAGTGCCTATTTATTTTCGATTGG
CATCTATGGCTTGATTACGAGCCGAAATATGGTTCGGGCCTTGATGTGCC
TTGAACTTATACTAAATGCAGTTAATATCAATTTTGTAACATTCTCTGAT
TTTTTTGATAGTCGACAATTAAAAGGAGATATTTTTTCAATTTTTGTTAT
AGCTATTGCAGCCGCTGAAGCAGCTATCGGATCAGCTATTGTTTCGTCAA
TTTATCGTAACAGAAAATCGACGCGTATCAATCAATCGACTTTGTTGAAT
AAGTAGTATTTATAAATCATAATATTCCTAAATTGAATTTAGGATATAGA
ATATGCCCTAATTTCGATCCTGTTTGTGAAACTGTAAGAAATCAAAGTAT
CTTTGTTCCCTTGATCCAGAAGTGGATTAATTAGCAAAATTATGGTAAAT
CATTGATTCATCTGGTGTTTAAATATGACATTTCAAAATTGACTAGATCG
AAAATGAAAAAGTTCAAAACAAAAATAGATAGATCCAATGTCACATTCAG
TAAAGATTTATGATACATGTATAGGGTGTACTCAATGTGTACGAGCTTGC
CCCACGGATGTATTAGAAATGATACCTTGGGACGGATGTAAAGCAAAGCA
AATTGCTTCTGCTCCAAGAACAGAGGACTGTGTTGGTTGTAAGCGATGTG
AATCCGCCTGTCCAACGGATTTCTTGAGTGTTCGAGTTTATTTATGGCAT
GAAACAACCCGAAGCATGGGTCTAGCTTATTGATATTGATACGTTCCCGA
AAAACCCACTTGAATCCGTTTTGAATACAGTTTTTTTTTTACCGATTACC
GACAAAAACCCGTACTCGAAA
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