CV712520

Overview
NameCV712520
Unique NameCV712520
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712520 vs. ExPASy Swiss-Prot
Match: RL23_ONCVO (60S ribosomal protein L23 (Fragment) OS=Onchocerca volvulus GN=RPL23 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.276e-15
Identity = 37/48 (77.08%), Postives = 44/48 (91.67%), Query Frame = 3
Query:   36 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGR 179
            MSKRGRGG++G KFR+SLGLPV A +NCADNTGAKNL++I+V GIKGR
Sbjct:    1 MSKRGRGGTSGAKFRISLGLPVGAVMNCADNTGAKNLFVIAVYGIKGR 48          
BLAST of CV712520 vs. ExPASy Swiss-Prot
Match: RL14_CLAMS (50S ribosomal protein L14 OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=rplN PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.535e-14
Identity = 47/102 (46.08%), Postives = 67/102 (65.69%), Query Frame = 3
Query:  120 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP--DLRK-KVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 416
            ADNTGAK +  I V G  GR      A +GD+++ATVK   P  +++K +V+ AVIVR +K  RR DG ++ F++NA VI+N  GE +G+ I GP+G+E  D
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGLGDVIVATVKDAIPGGNVKKGEVVKAVIVRTKKETRRPDGSYIKFDENAAVILNSNGEPRGTRIFGPVGRELRD 108          
BLAST of CV712520 vs. ExPASy Swiss-Prot
Match: RL14_CLAM3 (50S ribosomal protein L14 OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=rplN PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.535e-14
Identity = 47/102 (46.08%), Postives = 67/102 (65.69%), Query Frame = 3
Query:  120 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP--DLRK-KVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 416
            ADNTGAK +  I V G  GR      A +GD+++ATVK   P  +++K +V+ AVIVR +K  RR DG ++ F++NA VI+N  GE +G+ I GP+G+E  D
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGLGDVIVATVKDAIPGGNVKKGEVVKAVIVRTKKETRRPDGSYIKFDENAAVILNSNGEPRGTRIFGPVGRELRD 108          
BLAST of CV712520 vs. ExPASy Swiss-Prot
Match: RK14_ZYGCR (50S ribosomal protein L14, chloroplastic OS=Zygnema circumcarinatum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.005e-14
Identity = 45/115 (39.13%), Postives = 72/115 (62.61%), Query Frame = 3
Query:  111 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAA 443
            +N ADN+GA+ L  I V G   R      A +GDMV+A VK+  P++   + +++ AVIVR RK  +R +G+ + F+DNA V++N +G  +G+ + GP+ +E  DL + +I S A
Sbjct:    8 LNVADNSGARKLMCIRVLGSSNR----KYAHIGDMVIAVVKETVPNMPLKKSEIVRAVIVRTRKGLKRDNGMVLRFDDNAAVVINQEGNPRGTRVFGPVARELRDLNFTKIVSLA 118          
BLAST of CV712520 vs. ExPASy Swiss-Prot
Match: RK14_STIHE (50S ribosomal protein L14, chloroplastic OS=Stigeoclonium helveticum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.618e-14
Identity = 44/106 (41.51%), Postives = 69/106 (65.09%), Query Frame = 3
Query:  111 VNCADNTGAKNLYIISVKG-IKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 416
            +N ADNTGA+ +  I V G I+G+     +A +GD+++A VK   P+   K   ++ AV+VR RK  RR++G+F+ FEDNA V++N +G  +G+ I GP+ +E  D
Sbjct:    8 LNVADNTGARKVMCIRVLGGIQGQ-----TANIGDVIIAVVKDALPNTGVKKSDIVRAVVVRTRKGIRRENGMFIRFEDNAAVVINKEGNPRGTRIFGPVARELRD 108          
BLAST of CV712520 vs. ExPASy Swiss-Prot
Match: RL14_CYAP4 (50S ribosomal protein L14 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplN PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.833e-14
Identity = 47/105 (44.76%), Postives = 65/105 (61.90%), Query Frame = 3
Query:  111 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 416
            +N ADN+GAK L  I V G  G   R  S  VGD+++ATVK   P++  K   V+ AVIVR RK  RR+ G+ + F+DNA V++N  G  KG+ + GP+ +E  D
Sbjct:    8 LNVADNSGAKKLLCIRVLG--GGNRRYGS--VGDVIIATVKDATPNMPVKKSDVVRAVIVRTRKAIRRESGMSIRFDDNAAVLINQDGNPKGTRVFGPVARELRD 108          
BLAST of CV712520 vs. ExPASy Swiss-Prot
Match: RL14_CHLT3 (50S ribosomal protein L14 OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=rplN PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.833e-14
Identity = 43/102 (42.16%), Postives = 64/102 (62.75%), Query Frame = 3
Query:  120 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 416
            ADN+GAK +  I V G  GR      A +GDM++ +VK   P     +K V  AV+VR +K +RRKDG ++ F++NA V++N +GE +G+ I GP+ +E  D
Sbjct:   11 ADNSGAKRVRCIHVLGGTGRRY----ATIGDMIVVSVKSAIPGGAVKKKDVSKAVVVRTKKEYRRKDGSYIRFDENAVVLLNTQGEPRGTRIFGPVARELRD 108          
BLAST of CV712520 vs. ExPASy Swiss-Prot
Match: RL14_THEEB (50S ribosomal protein L14 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplN PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.618e-14
Identity = 46/105 (43.81%), Postives = 65/105 (61.90%), Query Frame = 3
Query:  111 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 416
            +N ADN+GAK L  I V G  G   R  S  VGD+++ATVK   P++  K   V+ AVIVR RK  RR+ G+ + F+DNA V++N  G  +G+ + GP+ +E  D
Sbjct:    8 LNVADNSGAKKLLCIRVLG--GSNRRYGS--VGDVIIATVKDATPNMAVKKSDVVRAVIVRTRKSIRRESGMSIRFDDNAAVLINQDGNPRGTRVFGPVARELRD 108          
BLAST of CV712520 vs. ExPASy Swiss-Prot
Match: RL14_MICLU (50S ribosomal protein L14 OS=Micrococcus luteus GN=rplN PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.949e-14
Identity = 46/102 (45.10%), Postives = 61/102 (59.80%), Query Frame = 3
Query:  120 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 416
            ADNTGAK +  I V G  GR      A +GD ++ATVK   P    K   V+ AV+VR RK  RR DG ++ F++NA VI+   GE +G+ I GP+G+E  D
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGIGDTIVATVKDAIPGGNVKKAHVVKAVVVRTRKQSRRPDGSYIKFDENAAVILKTDGEPRGTRIFGPVGRELRD 108          
BLAST of CV712520 vs. ExPASy Swiss-Prot
Match: RL14_MICLC (50S ribosomal protein L14 OS=Micrococcus luteus (strain ATCC 4698 / IFO 3333 / NCTC 2665) GN=rplN PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.949e-14
Identity = 46/102 (45.10%), Postives = 61/102 (59.80%), Query Frame = 3
Query:  120 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 416
            ADNTGAK +  I V G  GR      A +GD ++ATVK   P    K   V+ AV+VR RK  RR DG ++ F++NA VI+   GE +G+ I GP+G+E  D
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGIGDTIVATVKDAIPGGNVKKGDVVKAVVVRTRKQSRRPDGSYIKFDENAAVILKTDGEPRGTRIFGPVGRELRD 108          
The following BLAST results are available for this feature:
BLAST of CV712520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 398
Match NameE-valueIdentityDescription
RL23_ONCVO5.276e-1577.0860S ribosomal protein L23 (Fragment) OS=Onchocerca... [more]
RL14_CLAMS1.535e-1446.0850S ribosomal protein L14 OS=Clavibacter michigane... [more]
RL14_CLAM31.535e-1446.0850S ribosomal protein L14 OS=Clavibacter michigane... [more]
RK14_ZYGCR2.005e-1439.1350S ribosomal protein L14, chloroplastic OS=Zygnem... [more]
RK14_STIHE2.618e-1441.5150S ribosomal protein L14, chloroplastic OS=Stigeo... [more]
RL14_CYAP45.833e-1444.7650S ribosomal protein L14 OS=Cyanothece sp. (strai... [more]
RL14_CHLT35.833e-1442.1650S ribosomal protein L14 OS=Chloroherpeton thalas... [more]
RL14_THEEB7.618e-1443.8150S ribosomal protein L14 OS=Thermosynechococcus e... [more]
RL14_MICLU9.949e-1445.1050S ribosomal protein L14 OS=Micrococcus luteus GN... [more]
RL14_MICLC9.949e-1445.1050S ribosomal protein L14 OS=Micrococcus luteus (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I02_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712520 ID=CV712520; Name=CV712520; organism=Citrus sinensis; type=EST; length=678bp
GCTAAGAGAACCACAGACGAGAGGAGTGAGCAACAATGTCGAAGCGAGGA
AGGGGAGGATCGGCGGGGAACAAGTTCAGGATGTCGCTGGGTTTGCCGGT
GGCGGCGACGGTGAACTGCGCCGACAACACGGGGGCGAAGAATCTCTACA
TAATATCGGTGAAAGGAATCAAAGGGAGACTCAACCGACTTCCGTCGGCC
TGCGTGGGTGACATGGTCATGGCCACTGTCAAGAAAGGAAAGCCCGATCT
GAGGAAAAAGGTCATGCCAGCTGTCATCGTCCGCCAGCGCAAGCCTTGGC
GCCGAAAGGACGGCGTCTTCATGTACTTTGAAGATAATGCTGGTGTCATC
GTCAACCCTAAGGGCGAAATGAAAGGATCTGCCATAACTGGACCAATTGG
TAAGGAGTGTGCTGATCTGTGGCCAAGAATTGCAAGTGCTGCCAATGCTA
TTGTCTGAGTGGGGGTTTAAGGGATCTTTTTGGCCTTAGTTTTTTAGGTG
ATCGTAGGGTCTGTTAATATCATTGGGATCATTTCCTACTGATGAGTGTT
GTGGTTGTTCCTCTATTGCTAGACAGGGATACAAGGAGATTTCAGATTTT
CTACCTATTCTAATTGTAGAAGAATTTAATTTGTGTTTAATTTCCAAGAA
TTTTGTTCTTTTAAAAAAAAAAAAAAAA
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