CV712519

Overview
NameCV712519
Unique NameCV712519
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RL23_PONAB (60S ribosomal protein L23 OS=Pongo abelii GN=RPL23 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.473e-62
Identity = 116/136 (85.29%), Postives = 127/136 (93.38%), Query Frame = -2
Query:  223 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAA 630
            MSKRGRGGS+G KFR+SLGLPV A +NCADNTGAKNLYIISVKGIKG+LNRLP+A VGDMVMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGQLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNA 136          
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RL23_AEDAE (60S ribosomal protein L23 OS=Aedes aegypti GN=RpL23-A PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.513e-62
Identity = 113/136 (83.09%), Postives = 127/136 (93.38%), Query Frame = -2
Query:  223 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAA 630
            MSKRGRGGSAG KFR+SLGLPV A +NCADNTGAKNLY+I+V GI+GRLNRLP+A VGDM +ATVKKGKP+LRKKVMPAV++RQRKP+RR+DGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A
Sbjct:    1 MSKRGRGGSAGGKFRISLGLPVGAVINCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNA 136          
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RL23_CANFA (60S ribosomal protein L23 OS=Canis familiaris GN=RPL23 PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 7.311e-62
Identity = 116/136 (85.29%), Postives = 125/136 (91.91%), Query Frame = -2
Query:  223 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAA 630
            MSKRGRGGS+G KFR+SLGLPV A +NCADNTGAKNLYIISVKGIKGRLNRLP+A VGDMVMATVKKGKP LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWP IAS A
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPXLRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVXKECADLWPXIASNA 136          
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RL23_DROME (60S ribosomal protein L23 OS=Drosophila melanogaster GN=RpL23 PE=1 SV=2)

HSP 1 Score: 236.498 bits (602), Expect = 9.549e-62
Identity = 112/137 (81.75%), Postives = 128/137 (93.43%), Query Frame = -2
Query:  220 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAAN 630
            MSKRGRGG+AG KFR+SLGLPV A +NCADNTGAKNLY+I+V GI+GRLNRLP+A VGDM +ATVKKGKP+LRKKVMPAV++RQRKP+RR+DGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A+
Sbjct:    1 MSKRGRGGTAGGKFRISLGLPVGAVMNCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAS 137          
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RL23_SCHPO (60S ribosomal protein L23 OS=Schizosaccharomyces pombe GN=rpl23a PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.686e-58
Identity = 105/133 (78.95%), Postives = 120/133 (90.23%), Query Frame = -2
Query:  223 RGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAA 621
            RGRG ++G K+RM+LGLPV A +NCADN+GAKNLYI+SV G   RLNRLP+A  GDMV+ATVKKGKPDLRKK+MPA++VRQRK WRRKDGV++YFEDNAGVIVNPKGEMKGSAITGP+ KECADLWPRIAS A
Sbjct:    3 RGRGAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLATVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPRIASNA 135          
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RL23_CAEEL (60S ribosomal protein L23 OS=Caenorhabditis elegans GN=rpl-23 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.152e-57
Identity = 105/136 (77.21%), Postives = 122/136 (89.71%), Query Frame = -2
Query:  223 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAA 630
            MSKRGRGG++G KFR+SLGLPV A +NCADNTGAKNL++ISV GI+GRLNRLPSA VGDM + +VKKGKP+LRKKV+  V++RQRK +RRKDG F+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIA+ A
Sbjct:    1 MSKRGRGGASGAKFRISLGLPVGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDMFVCSVKKGKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIAANA 136          
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RL23_BRUMA (60S ribosomal protein L23 OS=Brugia malayi GN=RPL23 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.578e-56
Identity = 107/136 (78.68%), Postives = 122/136 (89.71%), Query Frame = -2
Query:  223 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAA 630
            MSKRGRGG++G KFR+SLGLPV A +NCADNTGAKNL++I+V GIKGRLNRLPSA VGDM +A+VKKGKP+LRKKV+ AV+VRQRK +RR DG  +YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A
Sbjct:    1 MSKRGRGGASGAKFRISLGLPVGAVMNCADNTGAKNLFVIAVSGIKGRLNRLPSAGVGDMFVASVKKGKPELRKKVLQAVVVRQRKQYRRIDGSSIYFEDNAGVIVNNKGEMKGSAITGPVTKECADLWPRIASNA 136          
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RL23_YEAST (60S ribosomal protein L23 OS=Saccharomyces cerevisiae GN=RPL23A PE=1 SV=3)

HSP 1 Score: 218.779 bits (556), Expect = 2.060e-56
Identity = 101/127 (79.53%), Postives = 116/127 (91.34%), Query Frame = -2
Query:  229 GSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIAS 609
            G+ G KFR+SLGLPV A +NCADN+GA+NLYII+VKG   RLNRLP+A +GDMVMATVKKGKP+LRKKVMPA++VRQ K WRR+DGVF+YFEDNAGVI NPKGEMKGSAITGP+GKECADLWPR+AS
Sbjct:    5 GAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKPELRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKECADLWPRVAS 131          
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RL23_DICDI (60S ribosomal protein L23 OS=Dictyostelium discoideum GN=rpl23 PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.440e-49
Identity = 91/128 (71.09%), Postives = 113/128 (88.28%), Query Frame = -2
Query:  223 SAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAA 606
            + G+ +R+SLGLPV A +N ADN+GAKNLY+I+VKGIKGRLNRLPSA VGDMVMATVKKGKP+LRKKV   ++VRQRK W+RKDGV++YFEDNAGV+ NPKGE+KG+ I GP+ KEC+DLWP++A+ A
Sbjct:    6 AVGSNYRVSLGLPVGAVMNSADNSGAKNLYVIAVKGIKGRLNRLPSAGVGDMVMATVKKGKPELRKKVCTGLVVRQRKHWKRKDGVYIYFEDNAGVMCNPKGEVKGN-ILGPVAKECSDLWPKVATNA 132          
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RL23_TRYCR (60S ribosomal protein L23 OS=Trypanosoma cruzi GN=RPL23 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.171e-41
Identity = 86/128 (67.19%), Postives = 103/128 (80.47%), Query Frame = -2
Query:  223 GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKG-EMKGSAITGPIGKECA-DLWPRIASAA 600
            G +FR+SL LPV A VNCADNTGAKNLYIISVKG  GRLNRLP+A +GD+VMA+VKKGKP+LR+KV+ AVI+RQRK WRRKDG  +YFEDNAGVIVN +G + + S I GP+ KE      P+I+S A
Sbjct:   10 GCRFRVSLALPVGAVVNCADNTGAKNLYIISVKGYHGRLNRLPAAALGDIVMASVKKGKPELRRKVLNAVIIRQRKSWRRKDGTVIYFEDNAGVIVNSQGRDGRVSGIAGPVAKEAGRPSGPKISSHA 137          
The following BLAST results are available for this feature:
BLAST of CV712519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 398
Match NameE-valueIdentityDescription
RL23_PONAB1.473e-6285.2960S ribosomal protein L23 OS=Pongo abelii GN=RPL23... [more]
RL23_AEDAE2.513e-6283.0960S ribosomal protein L23 OS=Aedes aegypti GN=RpL2... [more]
RL23_CANFA7.311e-6285.2960S ribosomal protein L23 OS=Canis familiaris GN=R... [more]
RL23_DROME9.549e-6281.7560S ribosomal protein L23 OS=Drosophila melanogast... [more]
RL23_SCHPO1.686e-5878.9560S ribosomal protein L23 OS=Schizosaccharomyces p... [more]
RL23_CAEEL4.152e-5777.2160S ribosomal protein L23 OS=Caenorhabditis elegan... [more]
RL23_BRUMA1.578e-5678.6860S ribosomal protein L23 OS=Brugia malayi GN=RPL2... [more]
RL23_YEAST2.060e-5679.5360S ribosomal protein L23 OS=Saccharomyces cerevis... [more]
RL23_DICDI2.440e-4971.0960S ribosomal protein L23 OS=Dictyostelium discoid... [more]
RL23_TRYCR4.171e-4167.1960S ribosomal protein L23 OS=Trypanosoma cruzi GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I02_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712519 ID=CV712519; Name=CV712519; organism=Citrus sinensis; type=EST; length=667bp
AAAAAGAACAAAATTTCTTGGGAAATTAAACACAAATTAAATTCTTCTAC
AATTAGAATAGGTAGAAAATCTGAAATCTCCTTGTATCCCTGTCTAGCAA
TAGAGGAACAACCACAACACTCATCAGTAGGAAATGATCCCAATGATATT
AACAGACCCTACGATCACCTAAAAAACTAAGGCCAAAAAGATCCCTTAAA
CCCCCACTCAGACAATAGCATTGGCAGCACTTGCAATTCTTGGCCACAGA
TCAGCACACTCCTTACCAATTGGTCCAGTTATGGCAGATCCTTTCATTTC
GCCCTTAGGGTTGACGATGACACCAGCATTATCTTCAAAGTACATGAAGA
CGCCGTCCTTTCGGCGCCAAGGCTTGCGCTGGCGGACGATGACAGCTGGC
ATGACCTTTTTCCTCAGATCGGGCTTTCCTTTCTTGACAGTGGCCATGAC
CATGTCACCCACGCAGGCCGACGGAAGTCGGTTGAGTCTCCCTTTGATTC
CTTTCACCGATATTATGTAGAGATTCTTCGCCCCCGTGTTGTCGGCGCAG
TTCACCGTCGCCGCCACCGGCAAACCCAGCGACATCCTGAACTTGTTCCC
CGCCGATCCTCCCCTTCCTCGCTTCGACATTGTTGCTCACTCCTCTCGTC
TGTGGTTCTCTTAGCCT
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