CV712519

Overview
NameCV712519
Unique NameCV712519
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RL14_FUSNN (50S ribosomal protein L14 OS=Fusobacterium nucleatum subsp. nucleatum GN=rplN PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.817e-13
Identity = 44/102 (43.14%), Postives = 63/102 (61.76%), Query Frame = -2
Query:  259 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 555
            +N ADN+GAK L +I V G  G   R     +GD+V+A+VK+  P    K   ++ AVIVR RK  RR DG ++ F+DNAGV++N   E + + I GP+ +E
Sbjct:    8 LNVADNSGAKKLMVIRVLG--GSRKRFGK--IGDIVVASVKEAIPGGNVKKGDIVKAVIVRTRKETRRDDGSYIKFDDNAGVVINNNNEPRATRIFGPVARE 105          
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RL14_DESVV (50S ribosomal protein L14 OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=rplN PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.817e-13
Identity = 45/108 (41.67%), Postives = 64/108 (59.26%), Query Frame = -2
Query:  259 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 573
            + V +T+  ADN+GAK +  I V G   R      A VGD++M +VK+  P  + K   VM AVIVR  K  RR DG ++ F+ NA V++N +GE  G+ I GP+ +E
Sbjct:    2 IQVESTLQVADNSGAKKVACIKVLGGSHRRY----ATVGDIIMVSVKEAMPHCKVKKGDVMQAVIVRTAKEVRRADGSYIKFDSNAAVLLNKQGEPVGTRIFGPVARE 105          
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RL14_DESVH (50S ribosomal protein L14 OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=rplN PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.817e-13
Identity = 45/108 (41.67%), Postives = 64/108 (59.26%), Query Frame = -2
Query:  259 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 573
            + V +T+  ADN+GAK +  I V G   R      A VGD++M +VK+  P  + K   VM AVIVR  K  RR DG ++ F+ NA V++N +GE  G+ I GP+ +E
Sbjct:    2 IQVESTLQVADNSGAKKVACIKVLGGSHRRY----ATVGDIIMVSVKEAMPHCKVKKGDVMQAVIVRTAKEVRRADGSYIKFDSNAAVLLNKQGEPVGTRIFGPVARE 105          
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RL14_CHLP8 (50S ribosomal protein L14 OS=Chlorobaculum parvum (strain NCIB 8327) GN=rplN PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.817e-13
Identity = 44/102 (43.14%), Postives = 62/102 (60.78%), Query Frame = -2
Query:  250 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 546
            ADN+GAK +  I V G  GR      A +GD +M TVK   P+    +K V  AV+VR  K  RRKDG ++ F++NA V++N +GE +G+ I GP+ +E  D
Sbjct:   11 ADNSGAKKVRCIHVFGGTGRRY----AALGDQIMVTVKAAVPNGVVKKKDVCKAVVVRCAKEQRRKDGSYIRFDENAVVLLNAQGEPRGTRIFGPVARELRD 108          
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RL14_BEUC1 (50S ribosomal protein L14 OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=rplN PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.817e-13
Identity = 48/112 (42.86%), Postives = 66/112 (58.93%), Query Frame = -2
Query:  223 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD-LWPRIASAA 546
            ADNTGAK +  I V G  GR      A +GD+++ATVK   P     R  V+ AV+VR  K  RR DG ++ F++NA V++   GE +G+ I GP+G+E  D  + RI S A
Sbjct:   11 ADNTGAKEILCIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKRGDVVKAVVVRTAKERRRPDGSYIRFDENAAVLLKSDGEPRGTRIFGPVGRELRDKKFMRIVSLA 118          
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RL14_ARTS2 (50S ribosomal protein L14 OS=Arthrobacter sp. (strain FB24) GN=rplN PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.817e-13
Identity = 45/102 (44.12%), Postives = 62/102 (60.78%), Query Frame = -2
Query:  250 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 546
            ADNTGAK +  I V G  GR      A +GD+++ATVK   P    K   V+ AVIVR +K  RR DG ++ F++NA VI+   G+ +G+ I GP+G+E  D
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVIVRTKKERRRADGSYIKFDENAAVILKNDGDPRGTRIFGPVGRELRD 108          
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RL14_ARTCA (50S ribosomal protein L14 OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=rplN PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.817e-13
Identity = 45/102 (44.12%), Postives = 62/102 (60.78%), Query Frame = -2
Query:  250 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 546
            ADNTGAK +  I V G  GR      A +GD+++ATVK   P    K   V+ AVIVR +K  RR DG ++ F++NA VI+   G+ +G+ I GP+G+E  D
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVIVRTKKERRRADGSYIKFDENAAVILKNDGDPRGTRIFGPVGRELRD 108          
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RL14_ARTAT (50S ribosomal protein L14 OS=Arthrobacter aurescens (strain TC1) GN=rplN PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.817e-13
Identity = 45/102 (44.12%), Postives = 62/102 (60.78%), Query Frame = -2
Query:  250 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 546
            ADNTGAK +  I V G  GR      A +GD+++ATVK   P    K   V+ AVIVR +K  RR DG ++ F++NA VI+   G+ +G+ I GP+G+E  D
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVIVRTKKERRRADGSYIKFDENAAVILKNDGDPRGTRIFGPVGRELRD 108          
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RK14_EMIHU (50S ribosomal protein L14, chloroplastic OS=Emiliania huxleyi GN=rpl14 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.817e-13
Identity = 44/105 (41.90%), Postives = 61/105 (58.10%), Query Frame = -2
Query:  250 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 555
            +N ADN+GAK L  I V G   R        VGD+++  VK   P+L   R  V+ AVIVR ++  RRKDG  + F+DNA VI+N +   +G+ + GPI +E  D
Sbjct:    8 LNVADNSGAKKLMCIRVLGTNRRYGH-----VGDVIIGVVKDATPNLTVKRSDVVRAVIVRTKQSIRRKDGSRLRFDDNATVIINKENNPRGTRVFGPIARELKD 107          
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RK14_CHLAT (50S ribosomal protein L14, chloroplastic OS=Chlorokybus atmophyticus GN=rpl14 PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.817e-13
Identity = 40/105 (38.10%), Postives = 65/105 (61.90%), Query Frame = -2
Query:  250 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 555
            +N ADN+GA+ +  I V G   R      A +GD+++A VK   P++   R +V+ AV+VR RK  RR +G+ + F+DNA V++N +G  +G+ + GP+ +E  D
Sbjct:    8 LNVADNSGARKIMCIRVLGGSQR----QYATIGDVIIAVVKDSVPNMALKRSEVVRAVVVRTRKGLRRDNGMTIRFDDNAAVVINKEGNPRGTRVFGPVARELRD 108          
The following BLAST results are available for this feature:
BLAST of CV712519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 398
Match NameE-valueIdentityDescription
RL14_FUSNN2.817e-1343.1450S ribosomal protein L14 OS=Fusobacterium nucleat... [more]
RL14_DESVV2.817e-1341.6750S ribosomal protein L14 OS=Desulfovibrio vulgari... [more]
RL14_DESVH2.817e-1341.6750S ribosomal protein L14 OS=Desulfovibrio vulgari... [more]
RL14_CHLP82.817e-1343.1450S ribosomal protein L14 OS=Chlorobaculum parvum ... [more]
RL14_BEUC12.817e-1342.8650S ribosomal protein L14 OS=Beutenbergia cavernae... [more]
RL14_ARTS22.817e-1344.1250S ribosomal protein L14 OS=Arthrobacter sp. (str... [more]
RL14_ARTCA2.817e-1344.1250S ribosomal protein L14 OS=Arthrobacter chloroph... [more]
RL14_ARTAT2.817e-1344.1250S ribosomal protein L14 OS=Arthrobacter aurescen... [more]
RK14_EMIHU2.817e-1341.9050S ribosomal protein L14, chloroplastic OS=Emilia... [more]
RK14_CHLAT2.817e-1338.1050S ribosomal protein L14, chloroplastic OS=Chloro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I02_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712519 ID=CV712519; Name=CV712519; organism=Citrus sinensis; type=EST; length=667bp
AAAAAGAACAAAATTTCTTGGGAAATTAAACACAAATTAAATTCTTCTAC
AATTAGAATAGGTAGAAAATCTGAAATCTCCTTGTATCCCTGTCTAGCAA
TAGAGGAACAACCACAACACTCATCAGTAGGAAATGATCCCAATGATATT
AACAGACCCTACGATCACCTAAAAAACTAAGGCCAAAAAGATCCCTTAAA
CCCCCACTCAGACAATAGCATTGGCAGCACTTGCAATTCTTGGCCACAGA
TCAGCACACTCCTTACCAATTGGTCCAGTTATGGCAGATCCTTTCATTTC
GCCCTTAGGGTTGACGATGACACCAGCATTATCTTCAAAGTACATGAAGA
CGCCGTCCTTTCGGCGCCAAGGCTTGCGCTGGCGGACGATGACAGCTGGC
ATGACCTTTTTCCTCAGATCGGGCTTTCCTTTCTTGACAGTGGCCATGAC
CATGTCACCCACGCAGGCCGACGGAAGTCGGTTGAGTCTCCCTTTGATTC
CTTTCACCGATATTATGTAGAGATTCTTCGCCCCCGTGTTGTCGGCGCAG
TTCACCGTCGCCGCCACCGGCAAACCCAGCGACATCCTGAACTTGTTCCC
CGCCGATCCTCCCCTTCCTCGCTTCGACATTGTTGCTCACTCCTCTCGTC
TGTGGTTCTCTTAGCCT
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