CV712519

Overview
NameCV712519
Unique NameCV712519
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RL14_KOCRD (50S ribosomal protein L14 OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=rplN PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.679e-13
Identity = 44/102 (43.14%), Postives = 62/102 (60.78%), Query Frame = -2
Query:  250 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 546
            ADNTGAK +  I V G  GR      A +GD+++ATVK   P    K   V+ AV+VR +K  RR DG ++ F++NA VI+   G+ +G+ I GP+G+E  D
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVVVRTKKQRRRPDGSYIRFDENAAVILKNDGDPRGTRIFGPVGRELRD 108          
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RK14_SACOF (50S ribosomal protein L14, chloroplastic OS=Saccharum officinarum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.679e-13
Identity = 43/115 (37.39%), Postives = 69/115 (60.00%), Query Frame = -2
Query:  223 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAA 555
            +N ADN+GA+ L  I V G  G       A +GD+++A +K   P +   R +V+ AVIVR RK ++  DG+ + ++DNA VI++ KG  KG+ + G + +E  +L + +I S A
Sbjct:    8 LNVADNSGARKLMCIRVIGAAGNQRY---ARIGDVIIAVIKDAVPQMPLERSEVIRAVIVRTRKEFKGDDGIIIRYDDNAAVIIDQKGNPKGTRVFGAVAEELRELNYTKIVSLA 119          
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RK14_SACHY (50S ribosomal protein L14, chloroplastic OS=Saccharum hybrid GN=rpl14 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.679e-13
Identity = 43/115 (37.39%), Postives = 69/115 (60.00%), Query Frame = -2
Query:  223 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAA 555
            +N ADN+GA+ L  I V G  G       A +GD+++A +K   P +   R +V+ AVIVR RK ++  DG+ + ++DNA VI++ KG  KG+ + G + +E  +L + +I S A
Sbjct:    8 LNVADNSGARKLMCIRVIGAAGNQRY---ARIGDVIIAVIKDAVPQMPLERSEVIRAVIVRTRKEFKGDDGIIIRYDDNAAVIIDQKGNPKGTRVFGAVAEELRELNYTKIVSLA 119          
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RL14_SYNFM (50S ribosomal protein L14 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rplN PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 43/102 (42.16%), Postives = 64/102 (62.75%), Query Frame = -2
Query:  259 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 555
            +N ADN+GAK LY I V G  G   R  S  VGD+++ +VK+  P+ + K   V+ AV+VR +K  RR DG ++ F+DN+ V++N   E  G+ I GP+ +E
Sbjct:    8 LNAADNSGAKRLYCIKVLG--GTRKRYAS--VGDIIVVSVKEAIPNAKVKKGDVLKAVVVRTQKEVRRPDGSYIKFDDNSAVLINQAKEPIGTRIFGPVARE 105          
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RL14_SALTO (50S ribosomal protein L14 OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=rplN PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 43/102 (42.16%), Postives = 61/102 (59.80%), Query Frame = -2
Query:  250 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 546
            ADNTGA+ +  I V G  GR      A +GD+++ATVK   P    K   V+ AV+VR  K  RR DG ++ F++NA VI+   G+ +G+ I GP+G+E  D
Sbjct:   11 ADNTGAREILCIRVLGGSGRRY----ASIGDVIVATVKDAIPGAGVKKGDVVKAVVVRTAKEKRRPDGSYIRFDENAAVIIKDGGDPRGTRIFGPVGRELRD 108          
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RL14_SALAI (50S ribosomal protein L14 OS=Salinispora arenicola (strain CNS-205) GN=rplN PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 43/102 (42.16%), Postives = 61/102 (59.80%), Query Frame = -2
Query:  250 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 546
            ADNTGA+ +  I V G  GR      A +GD+++ATVK   P    K   V+ AV+VR  K  RR DG ++ F++NA VI+   G+ +G+ I GP+G+E  D
Sbjct:   11 ADNTGAREILCIRVLGGSGRRY----ASIGDVIVATVKDAIPGAGVKKGDVVKAVVVRTAKEKRRPDGSYIRFDENAAVIIKDGGDPRGTRIFGPVGRELRD 108          
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RL14_HERA2 (50S ribosomal protein L14 OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=rplN PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 46/99 (46.46%), Postives = 60/99 (60.61%), Query Frame = -2
Query:  259 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 546
            ADNTGAK L  I V G  G   R  S  VGD ++ATVK+  P    K   V+ AVIVR +K + R DG  + F+DNA VI+N +G  +G+ I GP+ +E
Sbjct:   11 ADNTGAKELLCIRVLG--GTKRRYAS--VGDTIIATVKQANPGGSAKKGEVVRAVIVRVKKGYTRPDGSMIQFDDNAAVIINQQGNPRGTRIFGPVARE 105          
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RL14_CHLPB (50S ribosomal protein L14 OS=Chlorobium phaeobacteroides (strain BS1) GN=rplN PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 44/102 (43.14%), Postives = 62/102 (60.78%), Query Frame = -2
Query:  250 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 546
            ADN+GAK +  I V G  GR      A +GD +M TVK   P     +K+V  AV+VR  K  RRKDG ++ F++NA V++N +GE +G+ I GP+ +E  D
Sbjct:   11 ADNSGAKKVRCIHVFGGTGRRY----ASLGDQIMVTVKAAVPGGVVKKKEVTKAVVVRCAKEKRRKDGSYIRFDENAVVLLNAQGEPRGTRIFGPVARELRD 108          
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RK14_SCEOB (50S ribosomal protein L14, chloroplastic OS=Scenedesmus obliquus GN=rpl14 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 43/105 (40.95%), Postives = 66/105 (62.86%), Query Frame = -2
Query:  250 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 555
            +N ADN+GA+ L  I V G  GR     +A +GD+++A VK   P++  K   V+ AVIVR  K  RR++G+ + F+DNA V++N +G  +G+ + GPI +E  D
Sbjct:    8 LNVADNSGARKLMCIRVLG-GGR----QTATIGDVIIAVVKDALPNMPLKKSDVVRAVIVRTSKGVRRENGMMLCFDDNAAVVINKEGNPRGTRVFGPIARELRD 107          
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RK14_PORPU (50S ribosomal protein L14, chloroplastic OS=Porphyra purpurea GN=rpl14 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 42/106 (39.62%), Postives = 62/106 (58.49%), Query Frame = -2
Query:  250 VNCADNTGAKNLYIISVKGIKGRLNRLPS-ACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 555
            +N ADN+GA+ +  I V G        PS A +GD+++  VK   P++   R  V+ AV+VR RK  RR DG+ + F+DNA VI+N     +G+ + GPI +E  D
Sbjct:    8 LNVADNSGARKIMCIRVLGTSN-----PSYASIGDVIIGVVKDASPNMPVKRSDVVRAVVVRTRKALRRNDGMSIRFDDNAAVIINQDNNPRGTRVFGPIARELRD 108          
The following BLAST results are available for this feature:
BLAST of CV712519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 398
Match NameE-valueIdentityDescription
RL14_KOCRD3.679e-1343.1450S ribosomal protein L14 OS=Kocuria rhizophila (s... [more]
RK14_SACOF3.679e-1337.3950S ribosomal protein L14, chloroplastic OS=Saccha... [more]
RK14_SACHY3.679e-1337.3950S ribosomal protein L14, chloroplastic OS=Saccha... [more]
RL14_SYNFM4.806e-1342.1650S ribosomal protein L14 OS=Syntrophobacter fumar... [more]
RL14_SALTO4.806e-1342.1650S ribosomal protein L14 OS=Salinispora tropica (... [more]
RL14_SALAI4.806e-1342.1650S ribosomal protein L14 OS=Salinispora arenicola... [more]
RL14_HERA24.806e-1346.4650S ribosomal protein L14 OS=Herpetosiphon auranti... [more]
RL14_CHLPB4.806e-1343.1450S ribosomal protein L14 OS=Chlorobium phaeobacte... [more]
RK14_SCEOB4.806e-1340.9550S ribosomal protein L14, chloroplastic OS=Scened... [more]
RK14_PORPU4.806e-1339.6250S ribosomal protein L14, chloroplastic OS=Porphy... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I02_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712519 ID=CV712519; Name=CV712519; organism=Citrus sinensis; type=EST; length=667bp
AAAAAGAACAAAATTTCTTGGGAAATTAAACACAAATTAAATTCTTCTAC
AATTAGAATAGGTAGAAAATCTGAAATCTCCTTGTATCCCTGTCTAGCAA
TAGAGGAACAACCACAACACTCATCAGTAGGAAATGATCCCAATGATATT
AACAGACCCTACGATCACCTAAAAAACTAAGGCCAAAAAGATCCCTTAAA
CCCCCACTCAGACAATAGCATTGGCAGCACTTGCAATTCTTGGCCACAGA
TCAGCACACTCCTTACCAATTGGTCCAGTTATGGCAGATCCTTTCATTTC
GCCCTTAGGGTTGACGATGACACCAGCATTATCTTCAAAGTACATGAAGA
CGCCGTCCTTTCGGCGCCAAGGCTTGCGCTGGCGGACGATGACAGCTGGC
ATGACCTTTTTCCTCAGATCGGGCTTTCCTTTCTTGACAGTGGCCATGAC
CATGTCACCCACGCAGGCCGACGGAAGTCGGTTGAGTCTCCCTTTGATTC
CTTTCACCGATATTATGTAGAGATTCTTCGCCCCCGTGTTGTCGGCGCAG
TTCACCGTCGCCGCCACCGGCAAACCCAGCGACATCCTGAACTTGTTCCC
CGCCGATCCTCCCCTTCCTCGCTTCGACATTGTTGCTCACTCCTCTCGTC
TGTGGTTCTCTTAGCCT
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