CV712519

Overview
NameCV712519
Unique NameCV712519
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RL14_STAMF (50S ribosomal protein L14P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.467e-35
Identity = 73/136 (53.68%), Postives = 100/136 (73.53%), Query Frame = -2
Query:  223 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAA 630
            M K+G+G  A ++ R++ GL V + V  ADN+GAK + II V G KGRL R+P A +GD+V+ TVKKG P++RK+V+ AVIVRQ++P+RR DG ++ FEDNA  IV P+G  KGS I GPI KE A+ WP++A+ A
Sbjct:    1 MPKKGKGKPAFSRRRIATGLQVGSYVRVADNSGAKLVKIIGVPGYKGRLRRIPPAGIGDLVVVTVKKGTPEMRKQVVKAVIVRQKRPFRRPDGTWVAFEDNAVAIVTPEGTPKGSEIRGPIAKEVAERWPQLANIA 136          
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RL23_ENCCU (60S ribosomal protein L23 OS=Encephalitozoon cuniculi GN=RPL23 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.300e-34
Identity = 66/125 (52.80%), Postives = 95/125 (76.00%), Query Frame = -2
Query:  220 KFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAAN 594
            +++M+ G+ V   + CADN+GAK L  I VK  +GRLNRLP+A  GD+ + +VKKGKP+LRKKV  A+++RQ+K WRR DG  + FEDNA V++N KGE++G+ I GP+ +E AD+WP+I+S A+
Sbjct:   19 RYKMTRGIQVETLMKCADNSGAKILRCIGVKRYRGRLNRLPAAAPGDICVVSVKKGKPELRKKVHYAILIRQKKIWRRTDGSHIMFEDNAAVLINNKGELRGAQIAGPVPREVADMWPKISSQAS 143          
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RL14_THEAC (50S ribosomal protein L14P OS=Thermoplasma acidophilum GN=rpl14p PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.300e-34
Identity = 65/123 (52.85%), Postives = 93/123 (75.61%), Query Frame = -2
Query:  220 RMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAAN 588
            R + GLP+ A + CADNTGA+++ +I VK   G+  R+P+A VGDM MA+VKKG P++R KV+ AV++RQ++P+RR DG  + FEDNA V+V P GE++GS I GP+ +E A+ WPRIA+ A+
Sbjct:    7 RQTRGLPLGANITCADNTGARSISLIDVKAWHGKARRIPAAGVGDMFMASVKKGTPEMRSKVVYAVVIRQKRPYRRPDGTMVQFEDNAAVLVTPDGEVRGSEIKGPVAREAAERWPRIAAIAS 129          
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RL14_THEVO (50S ribosomal protein L14P OS=Thermoplasma volcanium GN=rpl14p PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.781e-34
Identity = 67/130 (51.54%), Postives = 96/130 (73.85%), Query Frame = -2
Query:  220 GSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAAN 609
            G AG + R   GLP+ A + CADNTGA+++ +I VK   G+  R+P+A VGDM +A+VKKG P++R KV+ AV++RQ++P+RR DG  + FEDNA V+V P GE++GS I GP+ +E A+ WPRIA+ A+
Sbjct:    3 GIAGREIR---GLPLGANIVCADNTGARSISLIDVKAYHGKARRIPAAGVGDMFIASVKKGTPEMRSKVVYAVVIRQKRPYRRPDGTMVEFEDNAAVLVTPDGEVRGSEIKGPVAREAAERWPRIAAIAS 129          
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RL14_HYPBU (50S ribosomal protein L14P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.450e-34
Identity = 70/134 (52.24%), Postives = 97/134 (72.39%), Query Frame = -2
Query:  220 RGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAAN 621
            +G  G AG +  ++ GL V + V  ADN+GAK   II V G KGRL R+P A VGDMV+ TVKKG P++RK+V+ A+++RQR+P+RR DG ++ FEDNA VIV+P G  KGS I GP+ +E A+ WP++A+ A+
Sbjct:    3 KGAAG-AGPRRHIAAGLQVGSYVKVADNSGAKEAMIIGVIGYKGRLRRIPPAAVGDMVVVTVKKGTPEMRKQVVRAIVIRQRRPYRRPDGTWIAFEDNAVVIVSPDGTPKGSEIRGPVAREAAERWPKVANIAS 135          
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RL14_METKA (50S ribosomal protein L14P OS=Methanopyrus kandleri GN=rpl14p PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.437e-33
Identity = 71/118 (60.17%), Postives = 88/118 (74.58%), Query Frame = -2
Query:  220 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAAN 573
            LPV A + CADNTGA+ L II+VKG KG   RLP+A +GDMV+ +VK+G PD+RK+V+ AVIVRQRK +RR DG  + FEDNA VIV P G  +GS I GP+ KE A+ WPRI S A+
Sbjct:   13 LPVGARLVCADNTGARELQIIAVKGYKGVRRRLPNAGIGDMVVCSVKEGTPDMRKEVVNAVIVRQRKEYRRPDGTRVKFEDNAAVIVTPDGAPRGSEIRGPVAKEAAERWPRIGSIAS 130          
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RL14_AERPE (50S ribosomal protein L14P OS=Aeropyrum pernix GN=rpl14p PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.877e-33
Identity = 70/136 (51.47%), Postives = 99/136 (72.79%), Query Frame = -2
Query:  223 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAA 630
            M+K+ + G   +++ ++ GL V + V  ADN+GAK + IISV  +K RL RLPSA VGD+V+ +VKKG P +R++V+ AV+VRQR+P+RR DG ++ FEDNA VIVNP G  +GS + GPI +E A+ WPR+A  A
Sbjct:    1 MAKKKKYGVVVSRYGVNTGLQVGSYVPVADNSGAKEVMIISVPQVKTRLRRLPSAGVGDLVVVSVKKGTPQMRRQVVYAVVVRQRRPFRRPDGTWVSFEDNAVVIVNPDGTPRGSEVRGPIAREAAERWPRVAKIA 136          
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RL14_METTH (50S ribosomal protein L14P OS=Methanobacterium thermoautotrophicum GN=rpl14p PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.216e-32
Identity = 68/123 (55.28%), Postives = 92/123 (74.80%), Query Frame = -2
Query:  220 RMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAAN 588
            +++  LPV A + C DNTGA+ + IISV+G KG   RL +A VGDMV+ +VKKG  D+R++V+ AVIVRQ+K +RR DG+ + FEDNA VIV+P+G +KGS I GP+ KE AD WP + SAA+
Sbjct:    7 KVTRALPVGARLQCVDNTGAREVEIISVRGYKGVRRRLAAAGVGDMVVVSVKKGTVDMRREVLNAVIVRQKKEYRRPDGLRVKFEDNAAVIVSPEGVLKGSEIRGPVAKEAADRWPSVGSAAS 129          
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RL14_METST (50S ribosomal protein L14P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.589e-32
Identity = 70/122 (57.38%), Postives = 88/122 (72.13%), Query Frame = -2
Query:  220 MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAAN 585
            +S  LP+ A + C DNTGA+ + IISVKG KG   RL SA VGDMV+ +VKKG  D+R++V  AV+VRQ+K +RR DG+ + FEDNA VI+   G +KGS I GPI KE ADLWP I SAA+
Sbjct:    8 VSKSLPIGARLKCIDNTGAREVEIISVKGFKGVRRRLASAGVGDMVVISVKKGTADMRREVTTAVVVRQKKEYRRADGLRVKFEDNAAVIITEDGVLKGSEIRGPIAKEAADLWPAIGSAAS 129          
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RL14_METS3 (50S ribosomal protein L14P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.075e-32
Identity = 65/122 (53.28%), Postives = 90/122 (73.77%), Query Frame = -2
Query:  220 MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAAN 585
            +S  LP+ AT+ C DNTGA+ + IISVKG KG   RL  A VGD+V+A+VKKG  D+R++V+ AV++RQ+K + R DG+ + FEDNA VI+ P+G +KGS + GP+ KE AD WP + SAA+
Sbjct:    8 VSKALPIGATLQCVDNTGAREIQIISVKGFKGVRRRLDVAGVGDLVVASVKKGTADMRREVVNAVVIRQKKEYMRADGLRVKFEDNAAVIITPEGILKGSEVRGPVAKEAADRWPSVGSAAS 129          
The following BLAST results are available for this feature:
BLAST of CV712519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 398
Match NameE-valueIdentityDescription
RL14_STAMF4.467e-3553.6850S ribosomal protein L14P OS=Staphylothermus mari... [more]
RL23_ENCCU1.300e-3452.8060S ribosomal protein L23 OS=Encephalitozoon cunic... [more]
RL14_THEAC1.300e-3452.8550S ribosomal protein L14P OS=Thermoplasma acidoph... [more]
RL14_THEVO3.781e-3451.5450S ribosomal protein L14P OS=Thermoplasma volcani... [more]
RL14_HYPBU6.450e-3452.2450S ribosomal protein L14P OS=Hyperthermus butylic... [more]
RL14_METKA1.437e-3360.1750S ribosomal protein L14P OS=Methanopyrus kandler... [more]
RL14_AERPE1.877e-3351.4750S ribosomal protein L14P OS=Aeropyrum pernix GN=... [more]
RL14_METTH1.216e-3255.2850S ribosomal protein L14P OS=Methanobacterium the... [more]
RL14_METST1.589e-3257.3850S ribosomal protein L14P OS=Methanosphaera stadt... [more]
RL14_METS32.075e-3253.2850S ribosomal protein L14P OS=Methanobrevibacter s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I02_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712519 ID=CV712519; Name=CV712519; organism=Citrus sinensis; type=EST; length=667bp
AAAAAGAACAAAATTTCTTGGGAAATTAAACACAAATTAAATTCTTCTAC
AATTAGAATAGGTAGAAAATCTGAAATCTCCTTGTATCCCTGTCTAGCAA
TAGAGGAACAACCACAACACTCATCAGTAGGAAATGATCCCAATGATATT
AACAGACCCTACGATCACCTAAAAAACTAAGGCCAAAAAGATCCCTTAAA
CCCCCACTCAGACAATAGCATTGGCAGCACTTGCAATTCTTGGCCACAGA
TCAGCACACTCCTTACCAATTGGTCCAGTTATGGCAGATCCTTTCATTTC
GCCCTTAGGGTTGACGATGACACCAGCATTATCTTCAAAGTACATGAAGA
CGCCGTCCTTTCGGCGCCAAGGCTTGCGCTGGCGGACGATGACAGCTGGC
ATGACCTTTTTCCTCAGATCGGGCTTTCCTTTCTTGACAGTGGCCATGAC
CATGTCACCCACGCAGGCCGACGGAAGTCGGTTGAGTCTCCCTTTGATTC
CTTTCACCGATATTATGTAGAGATTCTTCGCCCCCGTGTTGTCGGCGCAG
TTCACCGTCGCCGCCACCGGCAAACCCAGCGACATCCTGAACTTGTTCCC
CGCCGATCCTCCCCTTCCTCGCTTCGACATTGTTGCTCACTCCTCTCGTC
TGTGGTTCTCTTAGCCT
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