CV712519

Overview
NameCV712519
Unique NameCV712519
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RL14_LEIXX (50S ribosomal protein L14 OS=Leifsonia xyli subsp. xyli GN=rplN PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.265e-13
Identity = 47/102 (46.08%), Postives = 62/102 (60.78%), Query Frame = -2
Query:  250 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 546
            ADNTGAK L  I V G  GR      A +GD+++ATVK   P    K   V+ AVIVR RK  RR DG ++ F++NA VI+   G+ +G+ I GP+G+E  D
Sbjct:   11 ADNTGAKELLTIRVLGGSGRRY----AGLGDVIVATVKDAIPGGNVKKGDVVKAVIVRTRKNTRRTDGSYIKFDENAAVILKNDGDPRGTRIFGPVGRELRD 108          
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RL14_ACAM1 (50S ribosomal protein L14 OS=Acaryochloris marina (strain MBIC 11017) GN=rplN PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.265e-13
Identity = 45/106 (42.45%), Postives = 64/106 (60.38%), Query Frame = -2
Query:  250 TVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 558
            T+N ADN+GAK L  I V G   R        VGD+++ATVK   P++  K   V+ AVIVR RK   R+ G+ + F+DNA V++NP G  +G+ + GP+ +E  D
Sbjct:    7 TLNVADNSGAKRLLCIRVIGGGNRRY----GGVGDVIIATVKDATPNMPVKKSDVVRAVIVRTRKSICRESGMSIRFDDNAAVLINPDGNPRGTRVFGPVARELRD 108          
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RL14_GRAFK (50S ribosomal protein L14 OS=Gramella forsetii (strain KT0803) GN=rplN PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.652e-13
Identity = 45/102 (44.12%), Postives = 63/102 (61.76%), Query Frame = -2
Query:  250 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 546
            ADNTGAK +  I V G  G   R  S  VGD ++ +VK+  P+   K   V  AV+VR RK  RR DG ++ F+DNA V++ P+GEM+G+ + GP+ +E  D
Sbjct:   11 ADNTGAKEVLAIRVLG--GTKKRYAS--VGDKIVVSVKEATPNGSIKKGAVSTAVVVRTRKEVRRPDGSYIRFDDNACVLLGPQGEMRGTRVFGPVARELRD 108          
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RL14_DESVM (50S ribosomal protein L14 OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=rplN PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.652e-13
Identity = 47/108 (43.52%), Postives = 66/108 (61.11%), Query Frame = -2
Query:  259 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 573
            + V +T+  ADN+GAK +  I V G  G   R   A VGD+V+ +VK+  P  + K   VM AVIVR RK  RR DG ++ F+ NA V++N +GE  G+ I GP+ +E
Sbjct:    2 IQVESTLQVADNSGAKKVACIKVLG--GSKRRY--ATVGDIVVVSVKEALPHCKVKKGDVMQAVIVRTRKEVRRVDGSYIKFDSNAAVLLNKQGEPVGTRIFGPVARE 105          
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RK14_STAPU (50S ribosomal protein L14, chloroplastic OS=Staurastrum punctulatum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.652e-13
Identity = 44/115 (38.26%), Postives = 70/115 (60.87%), Query Frame = -2
Query:  223 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAA 555
            +N ADN+GA+ L  I V G   R      A +GDM++A VK+  P++   + +V+ AVIVR  K  +R +G+ + F+DNA V+VN +G  +G+ + GP+ +E  D  + +I S A
Sbjct:    8 LNVADNSGARRLMCIRVLGSSNR----KYANIGDMIIAVVKEAVPNMPLKKSEVVRAVIVRTCKGIKRNNGMILRFDDNAAVVVNQEGNPRGTRVFGPVARELRDFNFTKIVSLA 118          
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RK14_CHLRE (50S ribosomal protein L14, chloroplastic OS=Chlamydomonas reinhardtii GN=rpl14 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.652e-13
Identity = 43/105 (40.95%), Postives = 65/105 (61.90%), Query Frame = -2
Query:  250 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 555
            +N ADN+GA+ L  I   G   R     SA +GD+++A VK   P++   R  ++ AVIVR RK  RR++G+ + F+DNA VI+N +G  +G+ + GPI +E  D
Sbjct:    8 LNVADNSGARELMCIRALGGSYR----ESANIGDVIIAVVKDALPNMPVKRSDIVRAVIVRTRKGIRRENGMAIRFDDNAAVIINKEGNPRGTRVFGPIARELRD 108          
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RK14_PHYPA (50S ribosomal protein L14, chloroplastic OS=Physcomitrella patens GN=rpl14 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13
Identity = 39/102 (38.24%), Postives = 64/102 (62.75%), Query Frame = -2
Query:  259 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 555
            +N ADN+GA+ L  I + G   R      A +GD+++A VK+  P++   + +V+ AV+VR  K  +RK+G  + F+DNA VI+N +G  KG+ + GP+ +E
Sbjct:    8 LNVADNSGARKLMCIQILGASNR----KYAHIGDIIIAVVKEAIPNMPLKKSEVVRAVVVRTCKELKRKNGTIIQFDDNAAVIINQEGNPKGTRVFGPVARE 105          
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RK14_ADICA (50S ribosomal protein L14, chloroplastic OS=Adiantum capillus-veneris GN=rpl14 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13
Identity = 42/121 (34.71%), Postives = 75/121 (61.98%), Query Frame = -2
Query:  223 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAA 573
            + + + ++ ADN+GA+ L  I V G   R      A +GD+++A VK+  P++   R +V+ AV+VR R+  +R++G+ + F+DNA VI+N +G  +G+ I GP+ +E  +  + R+ S A
Sbjct:    2 IQIQSYLDVADNSGARKLMCIRVLGTGNR----KYADIGDIIIAVVKEAVPNMFLKRSEVVRAVVVRTRRGLKRRNGMVLEFDDNAAVIINQEGNPRGTRIFGPVARELRECNFARVVSLA 118          
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RL14_THEFY (50S ribosomal protein L14 OS=Thermobifida fusca (strain YX) GN=rplN PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.817e-13
Identity = 43/102 (42.16%), Postives = 60/102 (58.82%), Query Frame = -2
Query:  250 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 546
            ADNTGAK L  I V G  GR      A +GD ++ATVK   P    K   ++ AV+VR  K  RR DG ++ F++NA V++   G+ +G+ I GP+G+E  D
Sbjct:   11 ADNTGAKELLTIRVLGGSGRRY----ASIGDTIVATVKDALPGAGVKKGDIVKAVVVRTTKERRRPDGFYIRFDENAAVLIKDGGDPRGTRIFGPVGRELRD 108          
BLAST of CV712519 vs. ExPASy Swiss-Prot
Match: RL14_RENSM (50S ribosomal protein L14 OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=rplN PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.817e-13
Identity = 45/102 (44.12%), Postives = 62/102 (60.78%), Query Frame = -2
Query:  250 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 546
            ADNTGAK +  I V G  GR      A +GD+++ATVK   P    K   V+ AVIVR +K  RR DG ++ F++NA VI+   G+ +G+ I GP+G+E  D
Sbjct:   11 ADNTGAKEILAIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVIVRTKKERRRADGSYIKFDENAAVILKNDGDPRGTRIFGPVGRELRD 108          
The following BLAST results are available for this feature:
BLAST of CV712519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 398
Match NameE-valueIdentityDescription
RL14_LEIXX1.265e-1346.0850S ribosomal protein L14 OS=Leifsonia xyli subsp.... [more]
RL14_ACAM11.265e-1342.4550S ribosomal protein L14 OS=Acaryochloris marina ... [more]
RL14_GRAFK1.652e-1344.1250S ribosomal protein L14 OS=Gramella forsetii (st... [more]
RL14_DESVM1.652e-1343.5250S ribosomal protein L14 OS=Desulfovibrio vulgari... [more]
RK14_STAPU1.652e-1338.2650S ribosomal protein L14, chloroplastic OS=Staura... [more]
RK14_CHLRE1.652e-1340.9550S ribosomal protein L14, chloroplastic OS=Chlamy... [more]
RK14_PHYPA2.157e-1338.2450S ribosomal protein L14, chloroplastic OS=Physco... [more]
RK14_ADICA2.157e-1334.7150S ribosomal protein L14, chloroplastic OS=Adiant... [more]
RL14_THEFY2.817e-1342.1650S ribosomal protein L14 OS=Thermobifida fusca (s... [more]
RL14_RENSM2.817e-1344.1250S ribosomal protein L14 OS=Renibacterium salmoni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I02_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712519 ID=CV712519; Name=CV712519; organism=Citrus sinensis; type=EST; length=667bp
AAAAAGAACAAAATTTCTTGGGAAATTAAACACAAATTAAATTCTTCTAC
AATTAGAATAGGTAGAAAATCTGAAATCTCCTTGTATCCCTGTCTAGCAA
TAGAGGAACAACCACAACACTCATCAGTAGGAAATGATCCCAATGATATT
AACAGACCCTACGATCACCTAAAAAACTAAGGCCAAAAAGATCCCTTAAA
CCCCCACTCAGACAATAGCATTGGCAGCACTTGCAATTCTTGGCCACAGA
TCAGCACACTCCTTACCAATTGGTCCAGTTATGGCAGATCCTTTCATTTC
GCCCTTAGGGTTGACGATGACACCAGCATTATCTTCAAAGTACATGAAGA
CGCCGTCCTTTCGGCGCCAAGGCTTGCGCTGGCGGACGATGACAGCTGGC
ATGACCTTTTTCCTCAGATCGGGCTTTCCTTTCTTGACAGTGGCCATGAC
CATGTCACCCACGCAGGCCGACGGAAGTCGGTTGAGTCTCCCTTTGATTC
CTTTCACCGATATTATGTAGAGATTCTTCGCCCCCGTGTTGTCGGCGCAG
TTCACCGTCGCCGCCACCGGCAAACCCAGCGACATCCTGAACTTGTTCCC
CGCCGATCCTCCCCTTCCTCGCTTCGACATTGTTGCTCACTCCTCTCGTC
TGTGGTTCTCTTAGCCT
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