CV712489

Overview
NameCV712489
Unique NameCV712489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712489 vs. ExPASy Swiss-Prot
Match: ADF8_ARATH (Actin-depolymerizing factor 8 OS=Arabidopsis thaliana GN=ADF8 PE=2 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 2.042e-42
Identity = 76/137 (55.47%), Postives = 104/137 (75.91%), Query Frame = 3
Query:  171 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 581
            N+ SGM V D  K  F EL+ K+ +R+++FKID           G P E+Y+DF +++P+++CRYAVYDFD+ T +NCQKSKIFFIAWSP TSR+R+KMLYA+SKDRF+RE++GI  E+QATDP+EM L+ ++ R N
Sbjct:    3 NSASGMHVNDECKIKFLELKAKRTYRFIVFKIDEKAQQVQIEKLGNPEETYDDFTSSIPDDECRYAVYDFDFTTEDNCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKREMEGIQVELQATDPSEMSLDIIKGRLN 139          
BLAST of CV712489 vs. ExPASy Swiss-Prot
Match: ADF2_PETHY (Actin-depolymerizing factor 2 OS=Petunia hybrida GN=ADF2 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.667e-42
Identity = 81/136 (59.56%), Postives = 102/136 (75.00%), Query Frame = 3
Query:  171 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 578
            NA SGM V D  K  F EL+ K+ +R++I+KI+           G P ESYEDF A LP ++CRYAVYDFD++T EN QKS+IFFIAWSP T+R+R+KM+YA+SKDRF+RELDGI  E+QATDPTEM L+  R+RA
Sbjct:    3 NAASGMAVHDDCKLKFLELKAKRTYRFIIYKIEEKQKEVVVEKLGEPTESYEDFTAGLPADECRYAVYDFDFMTKENHQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVFRSRA 138          
BLAST of CV712489 vs. ExPASy Swiss-Prot
Match: ADF1_ORYSJ (Actin-depolymerizing factor 1 OS=Oryza sativa subsp. japonica GN=ADF1 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.549e-42
Identity = 78/136 (57.35%), Postives = 103/136 (75.74%), Query Frame = 3
Query:  171 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 578
            N+ SGM V D  K  F EL+ K+  R+++FKI+           G P ESY+DF A LP ++CRYAV+DFD+VT ENCQKSKIFFI+W+P TSR+R+KMLYA+SKDRF+RELDGI  E+QATDP+EM ++ +++RA
Sbjct:    3 NSASGMAVCDECKLKFLELKAKRSFRFIVFKINEKVQQVVVDRLGQPGESYDDFTACLPADECRYAVFDFDFVTDENCQKSKIFFISWAPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSMDIVKSRA 138          
BLAST of CV712489 vs. ExPASy Swiss-Prot
Match: ADF5_ORYSJ (Actin-depolymerizing factor 5 OS=Oryza sativa subsp. japonica GN=ADF5 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.942e-42
Identity = 80/135 (59.26%), Postives = 99/135 (73.33%), Query Frame = 3
Query:  174 ATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 578
            AT GM V +  +  F E++ KKVHR+V++KID           GGP E YE+  AALP +DCRYAV+DFD+VT +NCQKSKIFFIAWSP+ SRIRAK+LYATSK   RR LDG+HYE+QATD +EM  + +R RA
Sbjct:    8 ATEGMNVKEECQRWFMEMKWKKVHRFVVYKIDERSRAVLVDKVGGPGEGYEELVAALPTDDCRYAVFDFDFVTVDNCQKSKIFFIAWSPTASRIRAKILYATSKQGLRRVLDGVHYEVQATDSSEMGYDVIRGRA 142          
BLAST of CV712489 vs. ExPASy Swiss-Prot
Match: ADF_LILLO (Actin-depolymerizing factor OS=Lilium longiflorum PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.729e-41
Identity = 78/136 (57.35%), Postives = 102/136 (75.00%), Query Frame = 3
Query:  171 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 578
            N++SGM V D  K  F EL+ K+  R+++FKI+           G P ESY+DF   LP N+CRYAV+DFD+VT ENCQKSKIFFI+WSP TSR+R+KMLYA++KDRF+RELDGI  E+QATDP+EM ++ ++ RA
Sbjct:    3 NSSSGMAVDDECKLKFMELKAKRNFRFIVFKIEEKVQQVTVERLGQPNESYDDFTECLPPNECRYAVFDFDFVTDENCQKSKIFFISWSPDTSRVRSKMLYASTKDRFKRELDGIQVELQATDPSEMSMDIIKARA 138          
BLAST of CV712489 vs. ExPASy Swiss-Prot
Match: ADF7_ARATH (Actin-depolymerizing factor 7 OS=Arabidopsis thaliana GN=ADF7 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.258e-41
Identity = 79/136 (58.09%), Postives = 103/136 (75.74%), Query Frame = 3
Query:  171 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 578
            NA SGM V D  K  F EL+ K+ +R++IF+ID           G P E+Y+DF A+LP N+CRYAV+DFD++T ENCQKSKIFFIAWSP +SR+R KM+YA+SKDRF+RELDGI  E+QATDP+EM  + +++RA
Sbjct:    3 NAASGMAVEDECKLKFLELKSKRNYRFIIFRIDGQQVVVEKL--GNPDETYDDFTASLPANECRYAVFDFDFITDENCQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKSRA 136          
BLAST of CV712489 vs. ExPASy Swiss-Prot
Match: ADF9_ORYSJ (Actin-depolymerizing factor 9 OS=Oryza sativa subsp. japonica GN=ADF9 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.949e-41
Identity = 81/137 (59.12%), Postives = 100/137 (72.99%), Query Frame = 3
Query:  171 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 581
            N+ SG+ V D  K  F EL+ ++  R+++FKID           G  AE YEDFAA LP ++CRYAVYD D+VT ENCQKSKIFF +WSP T+R R+KMLYA+SKDRFRRELDGI  EIQATDP+EM L+ +R RA+
Sbjct:    3 NSASGLAVNDECKFKFQELKTRRGFRFIVFKIDDKAMEIKVERLGQTAEGYEDFAATLPADECRYAVYDLDFVTDENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIIRARAH 139          
BLAST of CV712489 vs. ExPASy Swiss-Prot
Match: ADF5_ARATH (Actin-depolymerizing factor 5 OS=Arabidopsis thaliana GN=ADF5 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.851e-41
Identity = 78/135 (57.78%), Postives = 101/135 (74.81%), Query Frame = 3
Query:  174 ATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 578
            AT+GM V D   ++F +++ KKVHRY++FKI+           GG  ESY D   +LP +DCRYAV+DFD+VT +NC+KSKIFFIAWSP  S+IRAK+LYATSKD  RR L+GIHYE+QATDPTEM  + +++RA
Sbjct:    8 ATTGMRVTDECTSSFMDMKWKKVHRYIVFKIEEKSRKVTVDKVGGAGESYHDLEDSLPVDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPEASKIRAKILYATSKDGLRRVLEGIHYELQATDPTEMGFDIIQDRA 142          
BLAST of CV712489 vs. ExPASy Swiss-Prot
Match: ADF6_ORYSJ (Actin-depolymerizing factor 6 OS=Oryza sativa subsp. japonica GN=ADF6 PE=2 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 5.030e-41
Identity = 76/136 (55.88%), Postives = 102/136 (75.00%), Query Frame = 3
Query:  171 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 578
            N+ SGM V D  K  F EL+ K+  R++ FKID           G P ++Y+DF A++P ++CRYAV+DFD+VT ENCQKSKIFFI+WSP TS++R+KMLYA+SKDRF+RELDGI  E+QATDP+EM ++ ++ RA
Sbjct:    3 NSASGMAVGDECKLKFQELKSKRSFRFITFKIDERTQQVVVDRLGQPGDTYDDFTASMPASECRYAVFDFDFVTDENCQKSKIFFISWSPDTSKVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSMDIVKARA 138          
BLAST of CV712489 vs. ExPASy Swiss-Prot
Match: ADF2_ARATH (Actin-depolymerizing factor 2 OS=Arabidopsis thaliana GN=ADF2 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 5.030e-41
Identity = 79/137 (57.66%), Postives = 102/137 (74.45%), Query Frame = 3
Query:  171 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 581
            NA SGM V D  K  F EL+ K+  R +++KI+           G P +SY+DFAA+LP +DCRY +YDFD+VT+ENCQKSKIFFIAWSP T+++R KM+YA+SKDRF+RELDGI  E+QATDPTEM L+  ++R N
Sbjct:    3 NAASGMAVHDDCKLKFMELKAKRTFRTIVYKIEDKQVIVEKL--GEPEQSYDDFAASLPADDCRYCIYDFDFVTAENCQKSKIFFIAWSPDTAKVRDKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVFKSRTN 137          
The following BLAST results are available for this feature:
BLAST of CV712489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
ADF8_ARATH2.042e-4255.47Actin-depolymerizing factor 8 OS=Arabidopsis thali... [more]
ADF2_PETHY2.667e-4259.56Actin-depolymerizing factor 2 OS=Petunia hybrida G... [more]
ADF1_ORYSJ4.549e-4257.35Actin-depolymerizing factor 1 OS=Oryza sativa subs... [more]
ADF5_ORYSJ5.942e-4259.26Actin-depolymerizing factor 5 OS=Oryza sativa subs... [more]
ADF_LILLO1.729e-4157.35Actin-depolymerizing factor OS=Lilium longiflorum ... [more]
ADF7_ARATH2.258e-4158.09Actin-depolymerizing factor 7 OS=Arabidopsis thali... [more]
ADF9_ORYSJ2.949e-4159.12Actin-depolymerizing factor 9 OS=Oryza sativa subs... [more]
ADF5_ARATH3.851e-4157.78Actin-depolymerizing factor 5 OS=Arabidopsis thali... [more]
ADF6_ORYSJ5.030e-4155.88Actin-depolymerizing factor 6 OS=Oryza sativa subs... [more]
ADF2_ARATH5.030e-4157.66Actin-depolymerizing factor 2 OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001H09_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712489 ID=CV712489; Name=CV712489; organism=Citrus sinensis; type=EST; length=741bp
AAAAATCTTCTTTCTTTTTTTTAATTATTACGTATAAAACTAGGCCACTT
CTTTTAGTTTTATTCTGAGCACAATACATTTTCGCTCTCTTTCATTGTTT
ATTTACTTGCTCTGGTGATCTGCGTTCTGTTGCTGCCGCCGCCATGTCTT
TCAGAGGACTAAGTCGACCAAATGCCACTTCTGGCATGGGCGTTGCTGAT
CACAGCAAAAATGCATTCACGGAATTGCAAAGGAAGAAGGTTCACCGTTA
TGTGATTTTTAAGATTGATGAGAAGAAAAAGGAGGTTGTGGTTGAGAAGA
CTGGTGGCCCCGCTGAGAGCTACGAGGATTTCGCTGCTGCTTTGCCTGAG
AATGATTGTCGATATGCTGTATATGACTTTGACTATGTGACTTCTGAGAA
TTGTCAGAAGAGCAAGATATTCTTCATTGCATGGTCCCCTTCAACCTCTA
GAATCCGTGCCAAGATGCTGTACGCCACATCTAAAGACAGATTTCGACGG
GAGCTGGATGGTATCCACTATGAGATTCAGGCTACTGATCCTACAGAGAT
GGATCTTGAAGAGCTTAGAAACCGTGCAAACTGAAGAGTCTGCAGTTTTG
CAGTTTCTTCCTTCCATGAAAAAAAAATCAGCAAGGGGTTCTGCCAACTG
TTGCTCCTTGCTTCATTAATCTATGTGCAAAAATCTATGCGTAATCTTCG
AATAACTGGCAATGTGGGAAGACTGATTGGGCTGAGGTTAT
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