CV712489 | Citrus Genome Database

Overview


Name	CV712489
Unique Name	CV712489
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	741

Libraries


Library Name	Type
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CV712489 vs. ExPASy Swiss-Prot
Match: DEST_BOVIN (Destrin OS=Bos taurus GN=DSTN PE=2 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 7.569e-13
Identity = 30/80 (37.50%), Postives = 53/80 (66.25%), Query Frame = 3

Query:  315 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMD 554
            + ++ F   LPE DCRYA+YD  + T E+ +K ++ F  W+P  + +++KM+YA+SKD  +++  GI +E QA  P +++
Sbjct:   66 DPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLN 144

[Close]

BLAST of CV712489 vs. ExPASy Swiss-Prot
Match: DEST_RAT (Destrin OS=Rattus norvegicus GN=Dstn PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 9.885e-13
Identity = 30/80 (37.50%), Postives = 53/80 (66.25%), Query Frame = 3

Query:  315 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMD 554
            + ++ F   LPE DCRYA+YD  + T E+ +K ++ F  W+P  + +++KM+YA+SKD  +++  GI +E QA  P +++
Sbjct:   66 DPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPEQAPLKSKMIYASSKDAIKKKFPGIKHEYQANGPEDLN 144

[Close]

BLAST of CV712489 vs. ExPASy Swiss-Prot
Match: DEST_MOUSE (Destrin OS=Mus musculus GN=Dstn PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 9.885e-13
Identity = 30/80 (37.50%), Postives = 53/80 (66.25%), Query Frame = 3

Query:  315 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMD 554
            + ++ F   LPE DCRYA+YD  + T E+ +K ++ F  W+P  + +++KM+YA+SKD  +++  GI +E QA  P +++
Sbjct:   66 DPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPEQAPLKSKMIYASSKDAIKKKFPGIKHEYQANGPEDLN 144

[Close]

BLAST of CV712489 vs. ExPASy Swiss-Prot
Match: DEST_CHICK (Destrin OS=Gallus gallus GN=DSTN PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 9.885e-13
Identity = 30/80 (37.50%), Postives = 53/80 (66.25%), Query Frame = 3

Query:  315 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMD 554
            + ++ F   LPE DCRYA+YD  + T E+ +K ++ F  W+P  + +++KM+YA+SKD  +++  GI +E QA  P +++
Sbjct:   66 DPFKHFVEMLPEKDCRYALYDASFETKES-KKEELMFFLWAPEQAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLN 144

[Close]

BLAST of CV712489 vs. ExPASy Swiss-Prot
Match: COF1_RAT (Cofilin-1 OS=Rattus norvegicus GN=Cfl1 PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 9.885e-13
Identity = 32/73 (43.84%), Postives = 51/73 (69.86%), Query Frame = 3

Query:  315 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQA 533
            + Y  F   LP+ DCRYA+YD  Y T E+ +K  + FI W+P ++ +++KM+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYTTFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQA 137

[Close]

BLAST of CV712489 vs. ExPASy Swiss-Prot
Match: COF1_HUMAN (Cofilin-1 OS=Homo sapiens GN=CFL1 PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 9.885e-13
Identity = 32/73 (43.84%), Postives = 51/73 (69.86%), Query Frame = 3

Query:  315 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQA 533
            + Y  F   LP+ DCRYA+YD  Y T E+ +K  + FI W+P ++ +++KM+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQA 137

[Close]

BLAST of CV712489 vs. ExPASy Swiss-Prot
Match: COF1_MOUSE (Cofilin-1 OS=Mus musculus GN=Cfl1 PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.291e-12
Identity = 32/73 (43.84%), Postives = 50/73 (68.49%), Query Frame = 3

Query:  315 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQA 533
            + Y  F   LP+ DCRYA+YD  Y T E+ +K  + FI W+P  + +++KM+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYTTFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPENAPLKSKMIYASSKDAIKKKLTGIKHELQA 137

[Close]

BLAST of CV712489 vs. ExPASy Swiss-Prot
Match: COF1_SHEEP (Cofilin-1 OS=Ovis aries GN=CFL1 PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.686e-12
Identity = 32/73 (43.84%), Postives = 50/73 (68.49%), Query Frame = 3

Query:  315 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQA 533
            + Y  F   LP+ DCRYA+YD  Y T E+ +K  + FI W+P  + +++KM+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137

[Close]

BLAST of CV712489 vs. ExPASy Swiss-Prot
Match: COF1_PIG (Cofilin-1 OS=Sus scrofa GN=CFL1 PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.686e-12
Identity = 32/73 (43.84%), Postives = 50/73 (68.49%), Query Frame = 3

Query:  315 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQA 533
            + Y  F   LP+ DCRYA+YD  Y T E+ +K  + FI W+P  + +++KM+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137

[Close]

BLAST of CV712489 vs. ExPASy Swiss-Prot
Match: COF1_MACFA (Cofilin-1 OS=Macaca fascicularis GN=CFL1 PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.686e-12
Identity = 32/73 (43.84%), Postives = 50/73 (68.49%), Query Frame = 3

Query:  315 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQA 533
            + Y  F   LP+ DCRYA+YD  Y T E+ +K  + FI W+P  + +++KM+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137

The following BLAST results are available for this feature:

BLAST of CV712489 vs. ExPASy Swiss-Prot

BLAST of CV712489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70


Match Name	E-value	Identity	Description
DEST_BOVIN	7.569e-13	37.50	Destrin OS=Bos taurus GN=DSTN PE=2 SV=3	[more]
DEST_RAT	9.885e-13	37.50	Destrin OS=Rattus norvegicus GN=Dstn PE=1 SV=3	[more]
DEST_MOUSE	9.885e-13	37.50	Destrin OS=Mus musculus GN=Dstn PE=1 SV=3	[more]
DEST_CHICK	9.885e-13	37.50	Destrin OS=Gallus gallus GN=DSTN PE=1 SV=3	[more]
COF1_RAT	9.885e-13	43.84	Cofilin-1 OS=Rattus norvegicus GN=Cfl1 PE=1 SV=3	[more]
COF1_HUMAN	9.885e-13	43.84	Cofilin-1 OS=Homo sapiens GN=CFL1 PE=1 SV=3	[more]
COF1_MOUSE	1.291e-12	43.84	Cofilin-1 OS=Mus musculus GN=Cfl1 PE=1 SV=3	[more]
COF1_SHEEP	1.686e-12	43.84	Cofilin-1 OS=Ovis aries GN=CFL1 PE=2 SV=3	[more]
COF1_PIG	1.686e-12	43.84	Cofilin-1 OS=Sus scrofa GN=CFL1 PE=1 SV=3	[more]
COF1_MACFA	1.686e-12	43.84	Cofilin-1 OS=Macaca fascicularis GN=CFL1 PE=2 SV=3	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS08_0001H09_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001H09, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CV712489 ID=CV712489; Name=CV712489; organism=Citrus sinensis; type=EST; length=741bp
AAAAATCTTCTTTCTTTTTTTTAATTATTACGTATAAAACTAGGCCACTT
CTTTTAGTTTTATTCTGAGCACAATACATTTTCGCTCTCTTTCATTGTTT
ATTTACTTGCTCTGGTGATCTGCGTTCTGTTGCTGCCGCCGCCATGTCTT
TCAGAGGACTAAGTCGACCAAATGCCACTTCTGGCATGGGCGTTGCTGAT
CACAGCAAAAATGCATTCACGGAATTGCAAAGGAAGAAGGTTCACCGTTA
TGTGATTTTTAAGATTGATGAGAAGAAAAAGGAGGTTGTGGTTGAGAAGA
CTGGTGGCCCCGCTGAGAGCTACGAGGATTTCGCTGCTGCTTTGCCTGAG
AATGATTGTCGATATGCTGTATATGACTTTGACTATGTGACTTCTGAGAA
TTGTCAGAAGAGCAAGATATTCTTCATTGCATGGTCCCCTTCAACCTCTA
GAATCCGTGCCAAGATGCTGTACGCCACATCTAAAGACAGATTTCGACGG
GAGCTGGATGGTATCCACTATGAGATTCAGGCTACTGATCCTACAGAGAT
GGATCTTGAAGAGCTTAGAAACCGTGCAAACTGAAGAGTCTGCAGTTTTG
CAGTTTCTTCCTTCCATGAAAAAAAAATCAGCAAGGGGTTCTGCCAACTG
TTGCTCCTTGCTTCATTAATCTATGTGCAAAAATCTATGCGTAATCTTCG
AATAACTGGCAATGTGGGAAGACTGATTGGGCTGAGGTTAT