CV712486

Overview
NameCV712486
Unique NameCV712486
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length810
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712486 vs. ExPASy Swiss-Prot
Match: DRL9_ARATH (Probable disease resistance protein At1g58602 OS=Arabidopsis thaliana GN=At1g58602 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.389e-18
Identity = 64/237 (27.00%), Postives = 119/237 (50.21%), Query Frame = 2
Query:  125 LFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVE--IHKMEEMELITTLRGHLKDKNYMVVFDDVWKIDFWGDVEHALLDNKKCGRIIVTTRHMNVAKACKSSSPVHIHELETLPPNEAWKLFCRKAXXXXXXXXXXX--ELKELSQDILGKCEGLPLAIVAVGGLLSTKNRVVSEWKKLFDRLGSIL------GSDPHLKDCNRVLSEGYHDLPHHLKSCLLY 805
            +FN+D +   F   AWV+V +++    + + ++ +      +    E  I +M E  L   L   L+    ++V DD+WK + W +V   +    K  ++++T+R+ ++     +++     + E L  +++WKLF R A             E+++L + ++  C GLPLAI  +GG+L+ K     +W++L + +GS L       +D +   CN VLS  + +LP +LK C LY
Sbjct:  202 VFNHDMVTKKFDKLAWVSVSQDFTLKNVWQNILGDLKPKEEETKEEEKKILEMTEYTLQRELYQLLEMSKSLIVLDDIWKKEDW-EVIKPIFPPTKGWKLLLTSRNESIV--APTNTKYFNFKPECLKTDDSWKLFQRIAFPINDASEFEIDEEMEKLGEKMIEHCGGLPLAIKVLGGMLAEK-YTSHDWRRLSENIGSHLVGGRTNFNDDNNNSCNYVLSLSFEELPSYLKHCFLY 434          
BLAST of CV712486 vs. ExPASy Swiss-Prot
Match: DRL10_ARATH (Probable disease resistance protein RDL5/RF45 OS=Arabidopsis thaliana GN=RDL5 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.641e-17
Identity = 65/239 (27.20%), Postives = 124/239 (51.88%), Query Frame = 2
Query:  125 LFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTLRGHL----KDKNYMVVFDDVWKIDFWGDVEHALLDNKKCGRIIVTTRHMNVAKACKSSSPVHIHELETLPPNEAWKLFCRKAXXXXXXXXXXX--ELKELSQDILGKCEGLPLAIVAVGGLLSTKNRVVSEWKKLFDRLGS-ILGSDPHLKD-----CNRVLSEGYHDLPHHLKSCLLY 805
            +FN++ +K  F   +WV V +++ +  + + ++++      +P   E   ME  +   TL+G L    +    ++V DD+W+ + W ++   +    K  ++++T+R+ +VA   +++S ++    E L   ++W LF R A             E +EL + ++  C GLPLAI  +GG+L+ K     +W++L + +GS ++G   +  D     CN VLS  + +LP +LK C LY
Sbjct:  203 VFNHEDVKHQFDGLSWVCVSQDFTRMNVWQKILRDL-----KPKEEEKKIMEMTQ--DTLQGELIRLLETSKSLIVLDDIWEKEDW-ELIKPIFPPTKGWKVLLTSRNESVAMR-RNTSYINFKP-ECLTTEDSWTLFQRIALPMKDAAEFKIDEEKEELGKLMIKHCGGLPLAIRVLGGMLAEKY-TSHDWRRLSENIGSHLVGGRTNFNDDNNNTCNNVLSLSFEELPSYLKHCFLY 430          
BLAST of CV712486 vs. ExPASy Swiss-Prot
Match: DRL11_ARATH (Probable disease resistance protein RDL6/RF9 OS=Arabidopsis thaliana GN=RDL6 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.506e-17
Identity = 65/239 (27.20%), Postives = 124/239 (51.88%), Query Frame = 2
Query:  125 LFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTLRGHL----KDKNYMVVFDDVWKIDFWGDVEHALLDNKKCGRIIVTTRHMNVAKACKSSSPVHIHELETLPPNEAWKLFCRKAXXXXXXXXXXX--ELKELSQDILGKCEGLPLAIVAVGGLLSTKNRVVSEWKKLFDRLGS-ILGSDPHLKD-----CNRVLSEGYHDLPHHLKSCLLY 805
            +FN++ +K  F   +WV V +++ +  + + ++++      +P   E   ME  +   TL+G L    +    ++V DD+W+ + W ++   +    K  ++++T+R+ +VA   +++S ++    E L   ++W LF R A             E +EL + ++  C GLPLAI  +GG+L+ K     +W++L + +GS ++G   +  D     CN VLS  + +LP +LK C LY
Sbjct:  203 VFNHEDVKHQFDGLSWVCVSQDFTRMNVWQKILRDL-----KPKEEEKKIMEMTQ--DTLQGELIRLLETSKSLIVLDDIWEKEDW-ELIKPIFPPTKGWKVLLTSRNESVAMR-RNTSYINFKP-ECLTTEDSWTLFQRIALPMKDAAEFKIDEEKEELGKLMIKHCGGLPLAIRVLGGMLAEKY-TSHDWRRLSENIGSHLVGGRTNFNDDNNNTCNYVLSLSFEELPSYLKHCFLY 430          
BLAST of CV712486 vs. ExPASy Swiss-Prot
Match: RGA4_SOLBU (Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.004e-16
Identity = 64/230 (27.83%), Postives = 105/230 (45.65%), Query Frame = 2
Query:  125 LFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTLRGHLKDKNYMVVFDDVWKIDF--WGDVEHALLDNKKCGRIIVTTRHMNVAKACKSSSPVHIHELETLPPNEAWKLFCRKAXXXXXXXXXXXELKELSQDILGKCEGLPLAIVAVGGLLSTKNRVVSEWKKLFD-RLGSILGSDPHLKDCNRVLSEGYHDLPHHLKSCLLY 805
            +FN++ +  HF+ + WV V  ++++  L++T+I      S     +   + +  EL       L  K Y++V DDVW  D   W  +   L    +   I+ TTR   V     +  P H   L  L P+++  LF ++A            L  + ++I+ KC G+PLA   +GGLL  K R  SEW+ + D  + S+   +  +    R+    YH LP  L+ C  Y
Sbjct:  197 IFNDERVTKHFNPKIWVCVSDDFDEKRLIKTIIGNIERSSPHVEDLASFQKKLQEL-------LNGKRYLLVLDDVWNDDLEKWAKLRAVLTVGARGASILATTRLEKVGSIMGTLQPYH---LSNLSPHDSLLLFMQRA--FGQQKEANPNLVAIGKEIVKKCGGVPLAAKTLGGLLRFK-REESEWEHVRDNEIWSLPQDESSILPALRL---SYHHLPLDLRQCFAY 410          
BLAST of CV712486 vs. ExPASy Swiss-Prot
Match: RGA3_SOLBU (Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.712e-16
Identity = 66/232 (28.45%), Postives = 109/232 (46.98%), Query Frame = 2
Query:  125 LFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTLRGHLKDKNYMVVFDDVWKIDF--WGDVEHALLDNKKCGRIIVTTRHMNVAKACKSSSPVHIHELETLPPNEAWKLFCRKAXXXXXXXXXXXELKELSQDILGKCEGLPLAIVAVGGLLSTKNRVVSEWKKLFDRLGSILGSDPHLKDCNRVLSE---GYHDLPHHLKSCLLY 805
            +FN+  +  HF+ + WV V  ++++  L++ +++     S       +  M+   L   L+  L  K Y +V DDVW  D   W ++   L        I++TTR   + K       + +++L  L   + W LF ++A           +L E+ ++I+ KC G+PLA   +GGLL  K R  SEW+ + D   S + + P  +D N VL      YH LP  L+ C  Y
Sbjct:  195 VFNDQRITEHFNLKIWVCVSDDFDEKRLIKAIVESIEGKS-------LGDMDLAPLQKKLQELLNGKRYFLVLDDVWNEDQEKWDNLRAVLKIGASGASILITTR---LEKIGSIMGTLQLYQLSNLSQEDCWLLFKQRAFCHQTETSP--KLMEIGKEIVKKCGGVPLAAKTLGGLLRFK-REESEWEHVRD---SEIWNLP--QDENSVLPALRLSYHHLPLDLRQCFAY 408          
BLAST of CV712486 vs. ExPASy Swiss-Prot
Match: RGA2_SOLBU (Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.193e-15
Identity = 61/229 (26.64%), Postives = 101/229 (44.10%), Query Frame = 2
Query:  125 LFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTLRGHLKDKNYMVVFDDVWKID--FWGDVEHALLDNKKCGRIIVTTRHMNVAKACKSSSPVHIHELETLPPNEAWKLFCRKAXXXXXXXXXXXELKELSQDILGKCEGLPLAIVAVGGLLSTKNRVVSEWKKLFDRLGSILGSDPHLKDCNRVLSEGYHDLPHHLKSCLLY 805
            +FN+  +  HF S+ W+ V +++++  L++ +++   S  G+P    + +M+   L   L+  L  K Y++V DDVW  D   W ++   L        ++ TTR   V     +  P   +EL  L   + W LF ++A            L  + ++I+ K  G+PLA   +GG+L  K R    W+ + D    I             L   YH LP  LK C  Y
Sbjct:  195 VFNDQRVTEHFHSKIWICVSEDFDEKRLIKAIVE---SIEGRPL---LGEMDLAPLQKKLQELLNGKRYLLVLDDVWNEDQQKWANLRAVLKVGASGASVLTTTRLEKVGSIMGTLQP---YELSNLSQEDCWLLFMQRA--FGHQEEINPNLVAIGKEIVKKSGGVPLAAKTLGGILCFK-REERAWEHVRD--SPIWNLPQDESSILPALRLSYHQLPLDLKQCFAY 409          
BLAST of CV712486 vs. ExPASy Swiss-Prot
Match: RGA1_SOLBU (Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 9.395e-15
Identity = 59/229 (25.76%), Postives = 97/229 (42.36%), Query Frame = 2
Query:  125 LFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTLRGHLKDKNYMVVFDDVWKIDF--WGDVEHALLDNKKCGRIIVTTRHMNVAKACKSSSPVHIHELETLPPNEAWKLFCRKAXXXXXXXXXXXELKELSQDILGKCEGLPLAIVAVGGLLSTKNRVVSEWKKLFDRLGSILGSDPHLKDCNRVLSEGYHDLPHHLKSCLLY 805
            +FN+  +   F  + W+ +  ++N+  L++ +++     S       +  M+   L   L+  L  K Y +V DDVW  D   W ++   L        ++ TTR   V     +  P   +EL  L P + W LF ++A            L  + ++I+ KC G+PLA   +GG+L  K R   EW+ + D    I             L   YH LP  L+ C +Y
Sbjct:  195 VFNDQRVTERFYPKIWICISDDFNEKRLIKAIVESIEGKS-------LSDMDLAPLQKKLQELLNGKRYFLVLDDVWNEDQHKWANLRAVLKVGASGAFVLTTTRLEKVGSIMGTLQP---YELSNLSPEDCWFLFMQRAFGHQEEINP--NLMAIGKEIVKKCGGVPLAAKTLGGILRFK-REEREWEHVRD--SPIWNLPQDESSILPALRLSYHHLPLDLRQCFVY 408          
BLAST of CV712486 vs. ExPASy Swiss-Prot
Match: R1A3_SOLDE (Putative late blight resistance protein homolog R1A-3 OS=Solanum demissum GN=R1A-3 PE=5 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 6.089e-14
Identity = 59/196 (30.10%), Postives = 93/196 (47.45%), Query Frame = 2
Query:  125 LFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKE-FHSFSGQPTPVEIHKMEEMELITTLRGHLKDKNYMVVFDDVWKIDFWGDVEHALLDNKKCGRIIVTTRHMNVAK-ACKSSSPVHIHELETLPPNEAWKLFCRKAXXXXXXXXXXXELKELSQDILGKCEGLPLAIVAVGGLLSTKNRVVSEWKKLFDRLG 706
            L+++  + + F   A   V + Y+  +LL +++++     SG        ++ + EL   LR  L  + Y+++ DDVW    W D+     D     RII+TTRH  VAK A   S P+H   L     +E+WKL  +K             LK++   I   C  LPL+IV V G LS   + V  W+++ + LG
Sbjct:   63 LYSDRSVVSQFDICAQCCVSQVYSYKDLLLSLLRDAIGDESGS------RELPDNELADMLRKTLLPRRYLILVDDVWDNSAWDDLRGCFPDVNNRSRIILTTRHHEVAKYASVHSDPLH---LRMFYEDESWKLLEKKVFGEQSCSPL---LKDVGLRIAKLCGKLPLSIVFVAGTLSEMEKEVECWEQMANNLG 246          
BLAST of CV712486 vs. ExPASy Swiss-Prot
Match: DRL23_ARATH (Putative disease resistance protein At4g10780 OS=Arabidopsis thaliana GN=At4g10780 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.558e-12
Identity = 59/218 (27.06%), Postives = 102/218 (46.79%), Query Frame = 2
Query:  170 WVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTLRGHLKDKNYMVVFDDVWK-IDFWGDVEHALLDNKKCGRIIVTTRHMNVAKACKSSSPVHIHELETLPPNEAWKLFCRKAXXXXXXXXXXXELKELSQDILGKCEGLPLAIVAVGGLLSTKNRVVSEWKKLFDRLGS----ILGSDPHLKDCNRVLSEGYHDL-PHHLKSCLLY 805
            WV V  +   +++   + ++   F G+    E +K +E +    +   L  K ++++ DD+WK +D       +     KC +++ TTR ++V        P+   E++ L  N+AW+LF  K            ++ EL++ + GKC GLPLA+  +G  ++ K R V EW    D L S      G D H+     +L   Y +L   H++SC  Y
Sbjct:  209 WVVVSSDLQIHKIQEDIGEKL-GFIGK----EWNKKQESQKAVDILNCLSKKRFVLLLDDIWKKVDLTKIGIPSQTRENKC-KVVFTTRSLDVCARMGVHDPM---EVQCLSTNDAWELFQEKVGQISLGSHP--DILELAKKVAGKCRGLPLALNVIGETMAGK-RAVQEWHHAVDVLTSYAAEFSGMDDHIL---LILKYSYDNLNDKHVRSCFQY 411          
BLAST of CV712486 vs. ExPASy Swiss-Prot
Match: DRL21_ARATH (Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.341e-12
Identity = 55/226 (24.34%), Postives = 99/226 (43.81%), Query Frame = 2
Query:  125 LFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTLRGHLKDKNYMVVFDDVWKIDF--WGDVEHALLDNKKCGRIIVTTRHMNVAKACKSSSPVHIHELETLPPNEAWKLFCRKAXXXXXXXXXXXELKELSQDILGKCEGLPLAIVAVGGLLSTKNRVVSEWKKLFDRLGSILGSDPHLKDCNRVLSEGYHDLPHHLKSC 796
            +FN+  +  HF  + W++ G  +N   + + V+++  S     + V    +  +++   L+  L  K +++V DD W      W   + A  D ++  +I++TTR   V+   K+     I++++ +   E W+L  R A           EL+ + + I  +C+GLPLA  A+   L +K     +W  +     S   S         VL   Y  LP  LK C
Sbjct:  213 VFNDYRVTEHFEVKMWISAGINFNVFTVTKAVLQDITS-----SAVNTEDLPSLQI--QLKKTLSGKRFLLVLDDFWSESDSEWESFQVAFTDAEEGSKIVLTTRSEIVSTVAKAEK---IYQMKLMTNEECWELISRFAFGNISVGSINQELEGIGKRIAEQCKGLPLAARAIASHLRSKPN-PDDWYAVSKNFSSYTNS------ILPVLKLSYDSLPPQLKRC 421          
The following BLAST results are available for this feature:
BLAST of CV712486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
DRL9_ARATH2.389e-1827.00Probable disease resistance protein At1g58602 OS=A... [more]
DRL10_ARATH2.641e-1727.20Probable disease resistance protein RDL5/RF45 OS=A... [more]
DRL11_ARATH4.506e-1727.20Probable disease resistance protein RDL6/RF9 OS=Ar... [more]
RGA4_SOLBU1.004e-1627.83Putative disease resistance protein RGA4 OS=Solanu... [more]
RGA3_SOLBU1.712e-1628.45Putative disease resistance protein RGA3 OS=Solanu... [more]
RGA2_SOLBU7.193e-1526.64Disease resistance protein RGA2 OS=Solanum bulboca... [more]
RGA1_SOLBU9.395e-1525.76Putative disease resistance protein RGA1 OS=Solanu... [more]
R1A3_SOLDE6.089e-1430.10Putative late blight resistance protein homolog R1... [more]
DRL23_ARATH2.558e-1227.06Putative disease resistance protein At4g10780 OS=A... [more]
DRL21_ARATH3.341e-1224.34Putative disease resistance protein At3g14460 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001H08_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712486 ID=CV712486; Name=CV712486; organism=Citrus sinensis; type=EST; length=810bp
GTTGTGGGGGATCGAATCCATTAAACGTAAATTGATTGATTTGATGGTGA
ACGGAAGATCCGAACGTTCAGTGGTTGCTGTGGTGGGTGTAGGAGGGCTA
GGCAAGACCACTCTTGCTGGAAAACTTTTTAACAATGATGGTTTAAAAAC
TCACTTCAGTAGCCGGGCTTGGGTCACCGTTGGGAAAGAATACAACAAAA
ATGAATTGTTGAGGACAGTTATAAAGGAGTTTCACAGTTTCTCAGGGCAG
CCTACTCCAGTCGAGATACACAAAATGGAAGAGATGGAGCTGATCACCAC
GCTGAGGGGCCACTTGAAGGACAAGAATTACATGGTTGTGTTCGACGATG
TTTGGAAGATTGATTTTTGGGGAGACGTGGAGCATGCTTTACTTGATAAC
AAGAAATGCGGCAGGATAATTGTCACAACACGGCACATGAATGTCGCTAA
GGCTTGCAAATCATCTTCCCCTGTTCATATCCATGAGCTTGAAACTTTGC
CTCCGAATGAAGCGTGGAAACTTTTTTGTAGAAAGGCTTCCGGACCAAGC
TCCGGAGGCTGTTGTCCTTCAGAGTTGAAGGAGTTGTCCCAGGACATCCT
TGGAAAATGTGAAGGTTTGCCTCTTGCTATCGTGGCCGTAGGTGGACTTC
TTTCAACCAAGAACAGGGTTGTATCTGAATGGAAGAAATTATTTGATCGG
TTGGGCTCAATCTTAGGAAGTGATCCCCATCTAAAAGACTGCAACAGAGT
TTTATCTGAAGGATATCATGATCTTCCTCACCATCTCAAATCATGTCTTC
TGTACTTTGG
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