CV712481

Overview
NameCV712481
Unique NameCV712481
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_POPAL (Cytochrome c biogenesis protein ccsA OS=Populus alba GN=ccsA PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.133e-59
Identity = 118/192 (61.46%), Postives = 137/192 (71.35%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSL--SARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            H P+SDLYE           IH +  FK ++N+LS ITAPS FFTQGFAT G LT MHQS+ILVPALQ QWL+MHVSMMV GY             LVITFRKVIR+  K  N   +N SF   EIQYM EKK++F N+   S+RNYYR+Q+IQQLD W +RI+S+GF+FLT GILSGAVWANEAWGSYWNW
Sbjct:   65 HLPISDLYESLIFLSWIFSIIHMVPYFKKHKNYLSTITAPSTFFTQGFATWGLLTDMHQSKILVPALQSQWLIMHVSMMVSGYAALLCGSLLSAALLVITFRKVIRIVGKNNNL--LNDSFPVDEIQYMMEKKSIFKNTFFPSSRNYYRFQLIQQLDHWGFRILSIGFLFLTIGILSGAVWANEAWGSYWNW 254          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_ACOCL (Cytochrome c biogenesis protein ccsA OS=Acorus calamus GN=ccsA PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 3.296e-59
Identity = 120/192 (62.50%), Postives = 138/192 (71.88%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSL--SARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFPLSDLYE           IH +  F+N++NH SAITAPSA FTQGFATSG LT+MHQS ILVPALQ QWLMMHVSMM+L Y             LVITFRK   +F KR NF  +  SF F EI+Y+NEK++V  N+   S  NY++YQ+ Q+LD WSYR+ISLGFIFLT GILSGAVWANEAWGSYWNW
Sbjct:   65 HFPLSDLYESLIFLSWSFSIIHMVPYFRNHRNHFSAITAPSAIFTQGFATSGLLTEMHQSIILVPALQSQWLMMHVSMMLLSYAALLCGSLLSVALLVITFRKNSDIFDKRNNF--LIRSFFFGEIEYLNEKRSVLQNTSFDSFTNYHKYQLTQRLDFWSYRVISLGFIFLTIGILSGAVWANEAWGSYWNW 254          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_ACOAM (Cytochrome c biogenesis protein ccsA OS=Acorus americanus GN=ccsA PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 3.296e-59
Identity = 120/192 (62.50%), Postives = 138/192 (71.88%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSL--SARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFPLSDLYE           IH +  F+N++NH SAITAPSA FTQGFATSG LT+MHQS ILVPALQ QWLMMHVSMM+L Y             LVITFRK   +F KR NF  +  SF F EI+Y+NEK++V  N+   S  NY++YQ+ Q+LD WSYR+ISLGFIFLT GILSGAVWANEAWGSYWNW
Sbjct:   65 HFPLSDLYESLIFLSWSFSIIHMVPYFRNHRNHFSAITAPSAIFTQGFATSGLLTEMHQSIILVPALQSQWLMMHVSMMLLSYAALLCGSLLSVALLVITFRKNSDIFDKRNNF--LIRSFFFGEIEYLNEKRSVLQNTSFDSFTNYHKYQLTQRLDFWSYRVISLGFIFLTIGILSGAVWANEAWGSYWNW 254          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_POPTR (Cytochrome c biogenesis protein ccsA OS=Populus trichocarpa GN=ccsA PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 5.623e-59
Identity = 117/192 (60.94%), Postives = 136/192 (70.83%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSL--SARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            H P+SDLYE           IH +  FK ++N+LS ITAPS FFTQGFAT G LT MHQS+ILVPALQ QWL+MHVSMMV GY             LVITFRKVIR+  K  N   +N SF   EIQYM EKK++  N+   S+RNYYR+Q+IQQLD W +RI+S+GF+FLT GILSGAVWANEAWGSYWNW
Sbjct:   65 HLPISDLYESLIFLSWIFSIIHMVPYFKKHKNYLSTITAPSTFFTQGFATWGLLTDMHQSKILVPALQSQWLIMHVSMMVSGYAALLCGSLLSAALLVITFRKVIRIVGKNNNL--LNDSFPVDEIQYMMEKKSILKNTFFPSSRNYYRFQLIQQLDHWGFRILSIGFLFLTIGILSGAVWANEAWGSYWNW 254          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_SPIOL (Cytochrome c biogenesis protein ccsA OS=Spinacia oleracea GN=ccsA PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 2.137e-58
Identity = 122/194 (62.89%), Postives = 139/194 (71.65%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDF-KNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRK-VIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSA--RNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFPLSDLYE           IH I  F K  +N L+ ITAPSA FTQGFATSG LT+MHQS ILVPALQ QWLMMHVSMMVLGY             L+I F+K +I++F KRK+ +  N SF F EIQY+NEK N+  N+  +  RNYYR Q+I+QLD WSYR+ISLGFIFLT GILSGAVWANEAWGSYWNW
Sbjct:   65 HFPLSDLYESLIFLSWSFYLIHMIPSFLKKEKNSLNVITAPSAIFTQGFATSGLLTEMHQSGILVPALQSQWLMMHVSMMVLGYAALLGGSLLSVTLLIIIFQKDLIQVFDKRKHLL--NESFFFGEIQYINEKSNIVQNASPSYVRNYYRSQLIEQLDHWSYRVISLGFIFLTIGILSGAVWANEAWGSYWNW 256          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_CERDE (Cytochrome c biogenesis protein ccsA OS=Ceratophyllum demersum GN=ccsA PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 2.791e-58
Identity = 118/192 (61.46%), Postives = 135/192 (70.31%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFPLS+LYE           IH +  F N++N LS IT PSA FTQGFATSG LT+MHQS ILVPALQ QWLMMHVSMM+L Y             LVITFR+ I LF KR     + G F F EIQY+NEK++V  N+  LS +NY+RYQ+ ++LD WSYRIISLGF FLT GILSGAVWANEAWGSYWNW
Sbjct:   65 HFPLSNLYESLMFLSWSFSIIHMVPYFGNHKNDLSVITNPSAIFTQGFATSGLLTEMHQSSILVPALQSQWLMMHVSMMLLSYAALLCGSLLSVALLVITFRQSIDLFFKRDQL--LTGGFSFGEIQYLNEKRSVLQNTSFLSFKNYHRYQLTRRLDHWSYRIISLGFTFLTIGILSGAVWANEAWGSYWNW 254          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_LIRTU (Cytochrome c biogenesis protein ccsA OS=Liriodendron tulipifera GN=ccsA PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.060e-57
Identity = 119/192 (61.98%), Postives = 134/192 (69.79%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFPLSDLYE           IH +    N++N LSAITAPSA FTQGFATSG  T+MHQS ILVPALQ QWLMMHVSMM+L Y             LVITFRK I +  K  +   + GSF F EI Y+NEK+NV  N+  LS RNY+RYQ+ Q+LD WSYR+ISLGF FLT GILSGAVWANEAWGSYWNW
Sbjct:   65 HFPLSDLYESLMFLSWSFSIIHMVPKIWNHKNDLSAITAPSAIFTQGFATSGLSTEMHQSAILVPALQSQWLMMHVSMMLLSYAALLCGSLLSVALLVITFRKNIGIVGKSNHL--LIGSFSFDEIHYLNEKRNVLQNTSFLSFRNYHRYQLTQRLDYWSYRVISLGFTFLTIGILSGAVWANEAWGSYWNW 254          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_CUCSA (Cytochrome c biogenesis protein ccsA OS=Cucumis sativus GN=ccsA PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.385e-57
Identity = 118/194 (60.82%), Postives = 133/194 (68.56%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLS--AITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            H PLSDLYE           IH    FK  +NHLS  AITAPS  FTQGFATSGFLT+MHQS +LVPALQ  WLMMHVSMMVLGY             +VITF+K IR+F K  N   +N  F F+EIQY+NE      N+   S++NYY+ Q+IQQLD WSYRIISLGFIFL+ GILSGAVWANE WGSYWNW
Sbjct:   65 HLPLSDLYESLLFLSWAFSIIHLFTYFKKYKNHLSVSAITAPSTIFTQGFATSGFLTEMHQSPLLVPALQSHWLMMHVSMMVLGYAALLCGSLFSVALIVITFQKAIRIFCKNNNL--LNALFSFNEIQYINEGNYFVRNTSFFSSKNYYKSQLIQQLDHWSYRIISLGFIFLSIGILSGAVWANETWGSYWNW 256          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_PHAAO (Cytochrome c biogenesis protein ccsA OS=Phalaenopsis aphrodite subsp. formosana GN=ccsA PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 4.030e-57
Identity = 112/192 (58.33%), Postives = 132/192 (68.75%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFPLS+LYE           IH I   +N +N L+AITAPSA FTQGFATSG  T+MHQ  ILVPALQ QWLMMHVSMM+L Y             +VITF+K    FLK KNF  +  SF F  ++Y+NEK ++   +  LS +N+Y+YQ+IQ LD WSYR+ISLGF FLT GILSGAVWANEAWGSYWNW
Sbjct:   65 HFPLSNLYESLIFLSWSLSIIHIILYIRNYKNDLNAITAPSAIFTQGFATSGLSTEMHQPAILVPALQSQWLMMHVSMMLLSYAALLCGSLLSVALIVITFQKKTDFFLKNKNFYSLRKSFFFGNMEYLNEKGSILKKTSLLSFKNFYKYQLIQHLDSWSYRVISLGFTFLTIGILSGAVWANEAWGSYWNW 256          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_NANDO (Cytochrome c biogenesis protein ccsA OS=Nandina domestica GN=ccsA PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 5.263e-57
Identity = 118/192 (61.46%), Postives = 133/192 (69.27%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFPLSDLYE           IH +  F N++N LS ITAPSA FTQGFATSG LT+MH+S  LVPALQ QWLMMHVSMM+L Y             LVITFRK +  F K K+   + G F F EI+Y+NE  NV  N+  +S RN+ RYQVIQQLD WS R+ISLGFIFLT GILSGAVWANEAWGSYWNW
Sbjct:   65 HFPLSDLYESLMFLSWSFSIIHMVPYFTNHKNLLSTITAPSAIFTQGFATSGLLTEMHRSTKLVPALQSQWLMMHVSMMILSYAALLCGSLLSIALLVITFRKNVENFGKSKSNPFLIGPFSFGEIKYVNEINNVLRNTFLISFRNFRRYQVIQQLDCWSCRVISLGFIFLTIGILSGAVWANEAWGSYWNW 256          
The following BLAST results are available for this feature:
BLAST of CV712481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
CCSA_POPAL1.133e-5961.46Cytochrome c biogenesis protein ccsA OS=Populus al... [more]
CCSA_ACOCL3.296e-5962.50Cytochrome c biogenesis protein ccsA OS=Acorus cal... [more]
CCSA_ACOAM3.296e-5962.50Cytochrome c biogenesis protein ccsA OS=Acorus ame... [more]
CCSA_POPTR5.623e-5960.94Cytochrome c biogenesis protein ccsA OS=Populus tr... [more]
CCSA_SPIOL2.137e-5862.89Cytochrome c biogenesis protein ccsA OS=Spinacia o... [more]
CCSA_CERDE2.791e-5861.46Cytochrome c biogenesis protein ccsA OS=Ceratophyl... [more]
CCSA_LIRTU1.060e-5761.98Cytochrome c biogenesis protein ccsA OS=Liriodendr... [more]
CCSA_CUCSA1.385e-5760.82Cytochrome c biogenesis protein ccsA OS=Cucumis sa... [more]
CCSA_PHAAO4.030e-5758.33Cytochrome c biogenesis protein ccsA OS=Phalaenops... [more]
CCSA_NANDO5.263e-5761.46Cytochrome c biogenesis protein ccsA OS=Nandina do... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001H04_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712481 ID=CV712481; Name=CV712481; organism=Citrus sinensis; type=EST; length=571bp
CCCAATTCCAATAAGACCCCCACGCCTCATTAGCCCATACTGCTCCCGAA
AGAATACCTGTGGTTAAAAAGATAAATCCTAAACTAATAATACGATAACT
CCAACGATCCAATTGTTGAATCACTTGATACCTGTAATAATTTCTAGCGG
AAAGACTATTTAGAAAAACATTCTTTTTTTCGTTCATGTATTGGATTTCA
CTGAAACAAAATGACCCATTTACATGTACAAAATTTTTTCTTTTCAAAAA
AAGCCTTATCACTTTTCGAAATGTAATGACTAGAAGAGCCGTGGATAATA
ATGATCCACATAAAAGAGCTGCATAGCCCAATACCATCATACTTACGTGC
ATCATTAACCACTGGACTTGGAGAGCGGGTACTAATATTCTGGATTGATG
CATTTTGGTTAAAAAACCCGAAGTCGCAAAGCCTTGGGTAAAAAAAGCAC
TTGGTGCCGTTATAGCGCTTAAATGATTTTGATTATTTTTAAAATCAAAA
ATCTTATGAATAATAGATAAACTCCATGAAAGAAAGATTAATGATTCATA
TAAATCACTTAATGGGAAATG
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