CV712481

Overview
NameCV712481
Unique NameCV712481
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_MESVI (Cytochrome c biogenesis protein ccsA OS=Mesostigma viride GN=ccsA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.108e-22
Identity = 64/191 (33.51%), Postives = 92/191 (48.17%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLN-SLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFPLS++YE            H + +     N +  IT P A     FAT      M  S  LVPAL+  WL+MHV++M+  Y             L +T+ K I L           G+     I  +N++ N ++   +  +     ++ + +D  SYR I +GF  LT GI+SGAVWAN+AWGSYW+W
Sbjct:   65 HFPLSNMYESLMFLCWCFTFFHLLIEKYIQINFIGFITVPIAMLVNAFATFFLPLDMQHSTPLVPALKSNWLIMHVTIMMASYAALILGSLLSIAFLFLTYNKQIEL----------QGN----SIGNINDEMNSYITIDIEFQKNESIELAKLIDNLSYRTIGIGFPLLTIGIISGAVWANDAWGSYWSW 241          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_PROM1 (Cytochrome c biogenesis protein ccsA OS=Prochlorococcus marinus (strain NATL1A) GN=ccsA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.447e-22
Identity = 64/190 (33.68%), Postives = 96/190 (50.53%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFP+S+LYE                +       +SA+  P +  + GFA+      +  S  LVPAL+  WL+MHVS+++  Y              ++  +K   +    +N    +GSF  S   Y++E+ N  LNS+    +      +QLD  SYR I+ GF+ LT G++SGAVWANEAWGS+W+W
Sbjct:   69 HFPISNLYESLCFLTWGCTLAQLFVERAWRSPIVSAVATPVSLLSIGFASFVLPENLQSSAPLVPALRSSWLVMHVSVIMCSYAALLIGSILSFGVFLVDGKKQFNI----RNSSFGSGSFRQSSELYLDER-NENLNSIQPIEFTN---AEQLDSLSYRSITAGFLLLTVGLISGAVWANEAWGSWWSW 250          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_NOSP7 (Cytochrome c biogenesis protein ccsA OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ccsA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.467e-22
Identity = 69/226 (30.53%), Postives = 101/226 (44.69%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRL------------------------------------FLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            +FPLS+LYE           +H I +  +    +  +TAP A     FAT    ++M  S  LVPAL+  WLMMHVS+M+L Y             L++T  + I+L                                    F + ++  + NG+   + +  +   +   + S    +  R  + + LD  SYRII LGF  LT GI++G VWANEAWGSYW+W
Sbjct:   65 YFPLSNLYESLFFLTWGITTVHLIAESSSRSRLVGVVTAPVAMLIAAFATMTLPSQMQASEPLVPALKSNWLMMHVSVMMLSYSALMVGALLAIAFLIVTRGQNIQLQGSSVGTGGYRSNGYRLHKAAELISQPPAPSAENNGFARFESSSNGNGNANTAVLNLVTTSEPQTVASAEPLSPQRLSLAETLDNISYRIIGLGFPLLTIGIIAGGVWANEAWGSYWSW 290          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_CHLRE (Cytochrome c biogenesis protein ccsA OS=Chlamydomonas reinhardtii GN=ccsA PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 5.497e-22
Identity = 69/193 (35.75%), Postives = 95/193 (49.22%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNN---QNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFPLS+LYE           ++ ++        +  L ++ AP +     FAT     +M Q+  LVPALQ  WLMMHV++M++ Y             ++ +   ++ L L    F H  G+          +K + F+N+              LD  SYRII LGF FLT GILSGAVWANEAWGSYW+W
Sbjct:  135 HFPLSNLYESLMFLAWCCTFLYLLYCTSFTLLVEKMLGSLIAPCSLLMNAFATFSLPKEMQQASPLVPALQSNWLMMHVTVMIISY----------ATLIIGSLLSILFLIL----FKHKKGT---------PKKYDNFINN--------------LDALSYRIIGLGFPFLTIGILSGAVWANEAWGSYWSW 290          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_CHLVU (Cytochrome c biogenesis protein ccsA OS=Chlorella vulgaris GN=ccsA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.225e-21
Identity = 63/193 (32.64%), Postives = 95/193 (49.22%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHV---NGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFPLS+LYE           ++   +       L  +T+P+      F      T++ QS  LVPALQ  WL+MHV++M+  Y             LV++     + F+K   FV     + +    +  ++ EK+   +  +  +N    + +  LD  SYR I +GF FLT GILSGA+WANE WG+YW+W
Sbjct:   67 HFPLSNLYESLIFLAWCLLLLYIYIEVSTKTLFLGVLTSPAILCLVAFTDFSLPTELQQSTPLVPALQSNWLVMHVTVMIASYAALLLGCFIAIAYLVLS-----KFFIKT-TFVTAPLSSQNTVLRQESFLEEKQKTDI--VFEKNDKNLKFLFFLDNLSYRTIGIGFCFLTLGILSGAIWANETWGNYWSW 251          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_ANASP (Cytochrome c biogenesis protein ccsA OS=Anabaena sp. (strain PCC 7120) GN=ccsA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.225e-21
Identity = 76/224 (33.93%), Postives = 94/224 (41.96%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRL----------------FLKRKNFVHV-------NGSFCFSEIQYMNEKKNVFLN-----------SLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            +FPLS+LYE           +H I +  +    +   T P A     FAT    + M  S  LVPAL+  WLMMHVS+M+L Y             LVIT    I+L                 +K    V         N  F   E Q         LN           S    +  R  + + LD  SYRII LGF  LT GI++GAVWANEAWGSYW+W
Sbjct:   65 YFPLSNLYESLFFLSWGITTVHLIAENSSRSRLVGVFTTPVAMGIVAFATLTLPSDMQVSEPLVPALKSNWLMMHVSVMMLSYSALMVGSLLAIAFLVITRGNNIQLQGSSVGNGGYRTNGYRLMKAGELVSQPATPPVENNGFTRLESQNNGNSNTAVLNLATTPQTPTLTSTETLSPQRLSLAETLDNISYRIIGLGFPLLTIGIIAGAVWANEAWGSYWSW 288          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_SYNP6 (Cytochrome c biogenesis protein ccsA OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ccsA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.089e-21
Identity = 69/205 (33.66%), Postives = 102/205 (49.76%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQ---------------LDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            +FP+S+LYE           IH + +  +    + A T+P A     FA      +M Q+  LVPAL+  WLMMHVS+M++ Y             LV+T  + I L   R + V   G+  F +++ +N   ++ + +  +       V++Q               LD  SYR+I LGF  LT GI++GAVWANEAWGSYW+W
Sbjct:   65 YFPISNLYESLFFLAWGLTAIHLLAEKLSGSRLVGAATSPLALGIVAFAAFTLPKEMRQAEPLVPALKSNWLMMHVSVMMVSYAALLVGSLLSVAFLVVTRGQAIEL---RGSSV---GTGSFRQVK-LNRASDLTIATAESGGSGGTAVLEQPVLQLAPEQLSLADTLDNVSYRVIGLGFPLLTIGIIAGAVWANEAWGSYWSW 262          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_SYNE7 (Cytochrome c biogenesis protein ccsA OS=Synechococcus elongatus (strain PCC 7942) GN=ccsA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.089e-21
Identity = 69/205 (33.66%), Postives = 102/205 (49.76%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQ---------------LDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            +FP+S+LYE           IH + +  +    + A T+P A     FA      +M Q+  LVPAL+  WLMMHVS+M++ Y             LV+T  + I L   R + V   G+  F +++ +N   ++ + +  +       V++Q               LD  SYR+I LGF  LT GI++GAVWANEAWGSYW+W
Sbjct:   65 YFPISNLYESLFFLAWGLTAIHLLAEKLSGSRLVGAATSPLALGIVAFAAFTLPKEMRQAEPLVPALKSNWLMMHVSVMMVSYAALLVGSLLSVAFLVVTRGQAIEL---RGSSV---GTGSFRQVK-LNRASDLTIATAESGGSGGTAVLEQPVLQLAPEQLSLADTLDNVSYRVIGLGFPLLTIGIIAGAVWANEAWGSYWSW 262          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_CYAA5 (Cytochrome c biogenesis protein ccsA OS=Cyanothece sp. (strain ATCC 51142) GN=ccsA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.563e-21
Identity = 70/208 (33.65%), Postives = 94/208 (45.19%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLF------------LKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSAR------NYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            +FPLS+LYE           IH + +  +    +  +T P A     FA      +M  S  LVPAL+  WLMMHVS+M+L Y             LV+T  + I L             L R    + +     +  Q         L S++ +      +  R  +   LD  SYRII LGF  LT GI++GAVWANEAWGSYW+W
Sbjct:   65 YFPLSNLYESLFFLAWGVTAIHLVAEQMSRSALVGVVTTPVAMGITAFAALSLPPEMQTSAPLVPALKSNWLMMHVSVMMLSYATLMVGSVLAIAFLVVTRNRDIELKGSSVGTGGYRDKLGRSLLNNNHKQTTVNLTQSNGSGGTAILESVAVKPETVTLSPQRLNLADTLDNISYRIIGLGFPLLTIGIIAGAVWANEAWGSYWSW 272          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_CYAP7 (Cytochrome c biogenesis protein ccsA OS=Cyanothece sp. (strain PCC 7424) GN=ccsA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.653e-21
Identity = 67/201 (33.33%), Postives = 89/201 (44.28%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKR------KNFVHVNGSFCFSEIQYMNEKKNVFLNSL-----SARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            +FP+S+LYE            H I    +  + +  +T P A     FA       M  S  LVPAL+  WLMMHVS+M+L Y             L +T  + + L          +  V +N      E           LN+       + +  R  +   LD  SYRII LGF  LT GI++GAVWANEAWGSYW+W
Sbjct:   65 YFPISNLYESLFFLAWGVTAAHLIAQQMSRSHLVGVVTTPVAMGISAFAALTLPADMQTSAPLVPALKSNWLMMHVSVMMLSYATLMVGSALAIAFLFVTKGQNVELHGSSVGTGGYRTGVRLNKPQPVQETAIEGSGNVAVLNTTVVSDAPSLSLQRLSIADTLDNISYRIIGLGFPLLTIGIIAGAVWANEAWGSYWSW 265          
The following BLAST results are available for this feature:
BLAST of CV712481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
CCSA_MESVI1.108e-2233.51Cytochrome c biogenesis protein ccsA OS=Mesostigma... [more]
CCSA_PROM11.447e-2233.68Cytochrome c biogenesis protein ccsA OS=Prochloroc... [more]
CCSA_NOSP72.467e-2230.53Cytochrome c biogenesis protein ccsA OS=Nostoc pun... [more]
CCSA_CHLRE5.497e-2235.75Cytochrome c biogenesis protein ccsA OS=Chlamydomo... [more]
CCSA_CHLVU1.225e-2132.64Cytochrome c biogenesis protein ccsA OS=Chlorella ... [more]
CCSA_ANASP1.225e-2133.93Cytochrome c biogenesis protein ccsA OS=Anabaena s... [more]
CCSA_SYNP62.089e-2133.66Cytochrome c biogenesis protein ccsA OS=Synechococ... [more]
CCSA_SYNE72.089e-2133.66Cytochrome c biogenesis protein ccsA OS=Synechococ... [more]
CCSA_CYAA53.563e-2133.65Cytochrome c biogenesis protein ccsA OS=Cyanothece... [more]
CCSA_CYAP74.653e-2133.33Cytochrome c biogenesis protein ccsA OS=Cyanothece... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001H04_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712481 ID=CV712481; Name=CV712481; organism=Citrus sinensis; type=EST; length=571bp
CCCAATTCCAATAAGACCCCCACGCCTCATTAGCCCATACTGCTCCCGAA
AGAATACCTGTGGTTAAAAAGATAAATCCTAAACTAATAATACGATAACT
CCAACGATCCAATTGTTGAATCACTTGATACCTGTAATAATTTCTAGCGG
AAAGACTATTTAGAAAAACATTCTTTTTTTCGTTCATGTATTGGATTTCA
CTGAAACAAAATGACCCATTTACATGTACAAAATTTTTTCTTTTCAAAAA
AAGCCTTATCACTTTTCGAAATGTAATGACTAGAAGAGCCGTGGATAATA
ATGATCCACATAAAAGAGCTGCATAGCCCAATACCATCATACTTACGTGC
ATCATTAACCACTGGACTTGGAGAGCGGGTACTAATATTCTGGATTGATG
CATTTTGGTTAAAAAACCCGAAGTCGCAAAGCCTTGGGTAAAAAAAGCAC
TTGGTGCCGTTATAGCGCTTAAATGATTTTGATTATTTTTAAAATCAAAA
ATCTTATGAATAATAGATAAACTCCATGAAAGAAAGATTAATGATTCATA
TAAATCACTTAATGGGAAATG
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