CV712481
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_PROMA (Cytochrome c biogenesis protein ccsA OS=Prochlorococcus marinus GN=ccsA PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.553e-19 Identity = 58/191 (30.37%), Postives = 96/191 (50.26%), Query Frame = -1 Query: 2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNV-FLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571 HFP+S+LYE I + + + A P + + FA+ ++ S LVPAL+ WL+MHVS+++ Y L+ + R+ +++ R N + + G + N+ +N+ + S+ + ++LD SYR I+ GF+ LT G++SGAVWANEAWGS+W+W Sbjct: 74 HFPISNLYESLCFLTWGLTFIQLLIERTFPYPLIQAALTPISLLSIAFASFVLPDELKASSSLVPALKSNWLVMHVSVIMCSYAALLIGSLLSLVVLLSSSRETLQI---RSNSMGIGG--------FKNKSENLNIVKSIDELIPITFSKSEELDNLSYRTITFGFLLLTFGLISGAVWANEAWGSWWSW 253
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_PROM9 (Cytochrome c biogenesis protein ccsA OS=Prochlorococcus marinus (strain MIT 9312) GN=ccsA PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 5.688e-19 Identity = 60/190 (31.58%), Postives = 92/190 (48.42%), Query Frame = -1 Query: 2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571 HFP+S+LYE + + + + +I P T FA + S LVPAL+ WL+MHVS+++L Y L I K +++ R + + G F+ N +LN L+ + + ++LD SYR I +GF+ LT G++SGAVWANEAWG++W+W Sbjct: 70 HFPVSNLYESLYFLAWGISMGQLYIEREYSSPIIPSIAIPIELLTVAFACFVLPDDLKLSSNLVPALRSSWLVMHVSVVMLSYAALIIGSLLSASVLFINRNKPLQI---RSSSTGIGGFKFFN---------NNYLNDLADPVEFSHS--EELDTLSYRSILIGFVLLTLGLISGAVWANEAWGTWWSW 245
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_SYNS9 (Cytochrome c biogenesis protein ccsA OS=Synechococcus sp. (strain CC9902) GN=ccsA PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 2.162e-18 Identity = 61/190 (32.11%), Postives = 92/190 (48.42%), Query Frame = -1 Query: 2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571 HFP+S+LYE + + ++A P FA+ ++ + LVPAL+ WL+MHVS++++ Y LV+ + ++L R + + GS F + + + L SL +QLD SYR I++GF+ LT GI+SGAVWANEAWGSYW+W Sbjct: 64 HFPISNLYESLCFLAWACTLTQLLVERAWPSPIVAAAATPMGLGCIAFASFALPDQLQSAAPLVPALRSSWLVMHVSVIMVSYAALLVGSLLSLAVLVMDRGEALQL---RSSSI---GSGGFRQAVTTPDSGFLELQSL------EISTNEQLDSLSYRTITVGFLMLTVGIISGAVWANEAWGSYWSW 241
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_SYNSC (Cytochrome c biogenesis protein ccsA OS=Synechococcus sp. (strain CC9605) GN=ccsA PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 3.687e-18 Identity = 61/190 (32.11%), Postives = 92/190 (48.42%), Query Frame = -1 Query: 2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571 HFP+S+LYE + + ++A P FA+ ++ + LVPAL+ WL+MHVS++++ Y LV + + L R + + GS F + + +V L S+ + +QLD SYR I++GF+ LT GI+SGAVWANEAWGSYW+W Sbjct: 64 HFPISNLYESLCFLAWACTLTQLLVERAWPSPIVAAAATPMGLGCIAFASFALPDQLQSAAPLVPALRSSWLVMHVSVIMVSYAALLVGSLLSLAVLVTDRDQSLEL---RSSSI---GSGGFRQAASIANGGSVQLQSV------QLSTNEQLDSLSYRTITVGFLMLTVGIVSGAVWANEAWGSYWSW 241
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_SYNPX (Cytochrome c biogenesis protein ccsA OS=Synechococcus sp. (strain WH8102) GN=ccsA PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 3.687e-18 Identity = 60/190 (31.58%), Postives = 91/190 (47.89%), Query Frame = -1 Query: 2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571 HFP+S+LYE + + ++A P FA+ ++ + LVPAL+ WL+MHVS++++ Y L+ + + L R + + GS F + + + L S+ R +QLD SYR I++GF+ LT GI+SGAVWANEAWGSYW+W Sbjct: 64 HFPISNLYESLCFLAWACTLTQLLVERSWPSPIVAAAATPMGLGCIAFASFALPDQLQSAAPLVPALRSSWLVMHVSVIMVSYAALLVGSLLSLAVLLTDRGEALEL---RSSSI---GSGGFRQSMRVGSDGVLQLQSI------RLSTGEQLDSLSYRTITVGFLMLTVGIVSGAVWANEAWGSYWSW 241
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_SYNR3 (Cytochrome c biogenesis protein ccsA OS=Synechococcus sp. (strain RCC307) GN=ccsA PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 4.816e-18 Identity = 58/190 (30.53%), Postives = 88/190 (46.32%), Query Frame = -1 Query: 2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571 HFP+S+LYE + + A T P A FA+ + + LVPAL+ WL+MHVS++++ Y + F + + R + + GS F + + V L + + ++LD SYR I++GF+ LT GI+SGAVWANEAWGS+W+W Sbjct: 69 HFPISNLYESLCFLAWGCTFTQLFVERSWPSPLVPAATTPMALVCVAFASFALPDTLQNAAPLVPALRSSWLVMHVSVIMMSYAALLVGSLLSA---AVLFTQPGQAMELRSSSI---GSGSFQKAGLQTDGGTVVLEAAPIA------LSERLDNLSYRTITVGFLLLTVGIISGAVWANEAWGSWWSW 246
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_PROM2 (Cytochrome c biogenesis protein ccsA OS=Prochlorococcus marinus (strain MIT 9215) GN=ccsA PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 4.816e-18 Identity = 61/190 (32.11%), Postives = 89/190 (46.84%), Query Frame = -1 Query: 2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571 HFP+S+LYE + + + + +I P T FA + S LVPAL+ WL+MHVS+++L Y L I K +++ R + + G F S +NE S S ++LD SYR I +GF+ LT G++SGAVWANEAWG++W+W Sbjct: 70 HFPISNLYESLYFLTWGITMGQLLIEREYQSPIIPSIAIPIELLTVAFACFVLPDDLKISSNLVPALRSSWLVMHVSVVMLSYAALIIGSLLSASVLFINKNKPLQI---RSSSTGI-GGFKISNNYPLNELVEPIEFSHS----------EELDTLSYRSILIGFVLLTLGLISGAVWANEAWGTWWSW 245
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_SYNPW (Cytochrome c biogenesis protein ccsA OS=Synechococcus sp. (strain WH7803) GN=ccsA PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.401e-17 Identity = 62/196 (31.63%), Postives = 98/196 (50.00%), Query Frame = -1 Query: 2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSE-IQYMNEKKNVFLNS-----LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571 HFP+S+LYE + + + ++A P FA+ ++ Q+ LVPAL+ WL+MHVS++++ Y V+ + +L L+ + GS F + + E V + + LS+ ++ R + QLD SYR I++GF+ LT GI+SGAVWANEAWGS+W+W Sbjct: 69 HFPISNLYESLCFLAWACTLTQLLVERQWPSPLVAASATPMGLGCIAFASFALPDQLQQASPLVPALRSSWLVMHVSVIMVSYAALLVGSLLSVA--VLMTDRGQQLELRSSSI----GSGAFRKAVSITGETSAVGVQAAPELQLSSIDFSRSE---QLDSLSYRTITVGFLLLTVGIISGAVWANEAWGSWWSW 255
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_PROMP (Cytochrome c biogenesis protein ccsA OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=ccsA PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.401e-17 Identity = 61/193 (31.61%), Postives = 91/193 (47.15%), Query Frame = -1 Query: 2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYR---YQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571 HFP+S+LYE + + + + + AI P T FA + S LVPAL+ WL+MHVS+++L Y L I + ++L R + + V G F S NS S N + ++LD SYR I +GF+ LT G+++GA+WANEAWG++W+W Sbjct: 70 HFPISNLYESLYFLVWGITLGQLLIEKEYSTPIIPAIAIPIELLTIAFACFVLPEDLKLSSNLVPALRSSWLVMHVSVVMLSYAALIMGSLLSASVLFINNSQPLQL---RSSSMGVGG-FKIS-------------NSYSTNNVIEPINFSHSEELDTLSYRSILVGFVLLTLGLITGAIWANEAWGTWWSW 245
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_PROM5 (Cytochrome c biogenesis protein ccsA OS=Prochlorococcus marinus (strain MIT 9515) GN=ccsA PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 1.830e-17 Identity = 58/190 (30.53%), Postives = 89/190 (46.84%), Query Frame = -1 Query: 2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571 HFP+S+LYE + + + + I P T FA + S LVPAL+ WL+MHVS+++L Y L I R+ ++L R + + G +E Y N +N + ++LD SYR I +GF+ LT G+++GA+WANEAWG++W+W Sbjct: 70 HFPISNLYESLYFLVWGISLGQLLVEKEYPNPIIPVIAIPIELLTIAFACFVLPDDLKLSSNLVPALRSSWLIMHVSVVMLSYAALIIGSLLSASVLFINNRQPLQL---RSSSTGIGGFRMSNE--YSGNNFNEPIN---------FTHTEELDTLSYRSILVGFVLLTLGLITGAIWANEAWGTWWSW 245 The following BLAST results are available for this feature:
BLAST of CV712481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 132
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Sequences
The
following sequences are available for this feature:
EST sequence >CV712481 ID=CV712481; Name=CV712481; organism=Citrus sinensis; type=EST; length=571bpback to top |