CV712481

Overview
NameCV712481
Unique NameCV712481
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_PROMA (Cytochrome c biogenesis protein ccsA OS=Prochlorococcus marinus GN=ccsA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.553e-19
Identity = 58/191 (30.37%), Postives = 96/191 (50.26%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNV-FLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFP+S+LYE           I  + +       + A   P +  +  FA+     ++  S  LVPAL+  WL+MHVS+++  Y             L+ + R+ +++   R N + + G        + N+ +N+  + S+       +   ++LD  SYR I+ GF+ LT G++SGAVWANEAWGS+W+W
Sbjct:   74 HFPISNLYESLCFLTWGLTFIQLLIERTFPYPLIQAALTPISLLSIAFASFVLPDELKASSSLVPALKSNWLVMHVSVIMCSYAALLIGSLLSLVVLLSSSRETLQI---RSNSMGIGG--------FKNKSENLNIVKSIDELIPITFSKSEELDNLSYRTITFGFLLLTFGLISGAVWANEAWGSWWSW 253          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_PROM9 (Cytochrome c biogenesis protein ccsA OS=Prochlorococcus marinus (strain MIT 9312) GN=ccsA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.688e-19
Identity = 60/190 (31.58%), Postives = 92/190 (48.42%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFP+S+LYE                + + +   + +I  P    T  FA       +  S  LVPAL+  WL+MHVS+++L Y             L I   K +++   R +   + G   F+         N +LN L+    + +   ++LD  SYR I +GF+ LT G++SGAVWANEAWG++W+W
Sbjct:   70 HFPVSNLYESLYFLAWGISMGQLYIEREYSSPIIPSIAIPIELLTVAFACFVLPDDLKLSSNLVPALRSSWLVMHVSVVMLSYAALIIGSLLSASVLFINRNKPLQI---RSSSTGIGGFKFFN---------NNYLNDLADPVEFSHS--EELDTLSYRSILIGFVLLTLGLISGAVWANEAWGTWWSW 245          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_SYNS9 (Cytochrome c biogenesis protein ccsA OS=Synechococcus sp. (strain CC9902) GN=ccsA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.162e-18
Identity = 61/190 (32.11%), Postives = 92/190 (48.42%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFP+S+LYE              + +       ++A   P       FA+     ++  +  LVPAL+  WL+MHVS++++ Y             LV+   + ++L   R + +   GS  F +     +   + L SL           +QLD  SYR I++GF+ LT GI+SGAVWANEAWGSYW+W
Sbjct:   64 HFPISNLYESLCFLAWACTLTQLLVERAWPSPIVAAAATPMGLGCIAFASFALPDQLQSAAPLVPALRSSWLVMHVSVIMVSYAALLVGSLLSLAVLVMDRGEALQL---RSSSI---GSGGFRQAVTTPDSGFLELQSL------EISTNEQLDSLSYRTITVGFLMLTVGIISGAVWANEAWGSYWSW 241          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_SYNSC (Cytochrome c biogenesis protein ccsA OS=Synechococcus sp. (strain CC9605) GN=ccsA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.687e-18
Identity = 61/190 (32.11%), Postives = 92/190 (48.42%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFP+S+LYE              + +       ++A   P       FA+     ++  +  LVPAL+  WL+MHVS++++ Y             LV    + + L   R + +   GS  F +   +    +V L S+      +    +QLD  SYR I++GF+ LT GI+SGAVWANEAWGSYW+W
Sbjct:   64 HFPISNLYESLCFLAWACTLTQLLVERAWPSPIVAAAATPMGLGCIAFASFALPDQLQSAAPLVPALRSSWLVMHVSVIMVSYAALLVGSLLSLAVLVTDRDQSLEL---RSSSI---GSGGFRQAASIANGGSVQLQSV------QLSTNEQLDSLSYRTITVGFLMLTVGIVSGAVWANEAWGSYWSW 241          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_SYNPX (Cytochrome c biogenesis protein ccsA OS=Synechococcus sp. (strain WH8102) GN=ccsA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.687e-18
Identity = 60/190 (31.58%), Postives = 91/190 (47.89%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFP+S+LYE              + +       ++A   P       FA+     ++  +  LVPAL+  WL+MHVS++++ Y             L+    + + L   R + +   GS  F +   +     + L S+      R    +QLD  SYR I++GF+ LT GI+SGAVWANEAWGSYW+W
Sbjct:   64 HFPISNLYESLCFLAWACTLTQLLVERSWPSPIVAAAATPMGLGCIAFASFALPDQLQSAAPLVPALRSSWLVMHVSVIMVSYAALLVGSLLSLAVLLTDRGEALEL---RSSSI---GSGGFRQSMRVGSDGVLQLQSI------RLSTGEQLDSLSYRTITVGFLMLTVGIVSGAVWANEAWGSYWSW 241          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_SYNR3 (Cytochrome c biogenesis protein ccsA OS=Synechococcus sp. (strain RCC307) GN=ccsA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.816e-18
Identity = 58/190 (30.53%), Postives = 88/190 (46.32%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFP+S+LYE                +       + A T P A     FA+      +  +  LVPAL+  WL+MHVS++++ Y               + F +  +    R + +   GS  F +     +   V L +          + ++LD  SYR I++GF+ LT GI+SGAVWANEAWGS+W+W
Sbjct:   69 HFPISNLYESLCFLAWGCTFTQLFVERSWPSPLVPAATTPMALVCVAFASFALPDTLQNAAPLVPALRSSWLVMHVSVIMMSYAALLVGSLLSA---AVLFTQPGQAMELRSSSI---GSGSFQKAGLQTDGGTVVLEAAPIA------LSERLDNLSYRTITVGFLLLTVGIISGAVWANEAWGSWWSW 246          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_PROM2 (Cytochrome c biogenesis protein ccsA OS=Prochlorococcus marinus (strain MIT 9215) GN=ccsA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.816e-18
Identity = 61/190 (32.11%), Postives = 89/190 (46.84%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFP+S+LYE              + + +     + +I  P    T  FA       +  S  LVPAL+  WL+MHVS+++L Y             L I   K +++   R +   + G F  S    +NE       S S          ++LD  SYR I +GF+ LT G++SGAVWANEAWG++W+W
Sbjct:   70 HFPISNLYESLYFLTWGITMGQLLIEREYQSPIIPSIAIPIELLTVAFACFVLPDDLKISSNLVPALRSSWLVMHVSVVMLSYAALIIGSLLSASVLFINKNKPLQI---RSSSTGI-GGFKISNNYPLNELVEPIEFSHS----------EELDTLSYRSILIGFVLLTLGLISGAVWANEAWGTWWSW 245          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_SYNPW (Cytochrome c biogenesis protein ccsA OS=Synechococcus sp. (strain WH7803) GN=ccsA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.401e-17
Identity = 62/196 (31.63%), Postives = 98/196 (50.00%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSE-IQYMNEKKNVFLNS-----LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFP+S+LYE              + + +     ++A   P       FA+     ++ Q+  LVPAL+  WL+MHVS++++ Y              V+   +  +L L+  +     GS  F + +    E   V + +     LS+ ++ R +   QLD  SYR I++GF+ LT GI+SGAVWANEAWGS+W+W
Sbjct:   69 HFPISNLYESLCFLAWACTLTQLLVERQWPSPLVAASATPMGLGCIAFASFALPDQLQQASPLVPALRSSWLVMHVSVIMVSYAALLVGSLLSVA--VLMTDRGQQLELRSSSI----GSGAFRKAVSITGETSAVGVQAAPELQLSSIDFSRSE---QLDSLSYRTITVGFLLLTVGIISGAVWANEAWGSWWSW 255          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_PROMP (Cytochrome c biogenesis protein ccsA OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=ccsA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.401e-17
Identity = 61/193 (31.61%), Postives = 91/193 (47.15%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYR---YQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFP+S+LYE              + + + +   + AI  P    T  FA       +  S  LVPAL+  WL+MHVS+++L Y             L I   + ++L   R + + V G F  S             NS S  N      +   ++LD  SYR I +GF+ LT G+++GA+WANEAWG++W+W
Sbjct:   70 HFPISNLYESLYFLVWGITLGQLLIEKEYSTPIIPAIAIPIELLTIAFACFVLPEDLKLSSNLVPALRSSWLVMHVSVVMLSYAALIMGSLLSASVLFINNSQPLQL---RSSSMGVGG-FKIS-------------NSYSTNNVIEPINFSHSEELDTLSYRSILVGFVLLTLGLITGAIWANEAWGTWWSW 245          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_PROM5 (Cytochrome c biogenesis protein ccsA OS=Prochlorococcus marinus (strain MIT 9515) GN=ccsA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.830e-17
Identity = 58/190 (30.53%), Postives = 89/190 (46.84%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFP+S+LYE              + + +     +  I  P    T  FA       +  S  LVPAL+  WL+MHVS+++L Y             L I  R+ ++L   R +   + G    +E  Y     N  +N         +   ++LD  SYR I +GF+ LT G+++GA+WANEAWG++W+W
Sbjct:   70 HFPISNLYESLYFLVWGISLGQLLVEKEYPNPIIPVIAIPIELLTIAFACFVLPDDLKLSSNLVPALRSSWLIMHVSVVMLSYAALIIGSLLSASVLFINNRQPLQL---RSSSTGIGGFRMSNE--YSGNNFNEPIN---------FTHTEELDTLSYRSILVGFVLLTLGLITGAIWANEAWGTWWSW 245          
The following BLAST results are available for this feature:
BLAST of CV712481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
CCSA_PROMA2.553e-1930.37Cytochrome c biogenesis protein ccsA OS=Prochloroc... [more]
CCSA_PROM95.688e-1931.58Cytochrome c biogenesis protein ccsA OS=Prochloroc... [more]
CCSA_SYNS92.162e-1832.11Cytochrome c biogenesis protein ccsA OS=Synechococ... [more]
CCSA_SYNSC3.687e-1832.11Cytochrome c biogenesis protein ccsA OS=Synechococ... [more]
CCSA_SYNPX3.687e-1831.58Cytochrome c biogenesis protein ccsA OS=Synechococ... [more]
CCSA_SYNR34.816e-1830.53Cytochrome c biogenesis protein ccsA OS=Synechococ... [more]
CCSA_PROM24.816e-1832.11Cytochrome c biogenesis protein ccsA OS=Prochloroc... [more]
CCSA_SYNPW1.401e-1731.63Cytochrome c biogenesis protein ccsA OS=Synechococ... [more]
CCSA_PROMP1.401e-1731.61Cytochrome c biogenesis protein ccsA OS=Prochloroc... [more]
CCSA_PROM51.830e-1730.53Cytochrome c biogenesis protein ccsA OS=Prochloroc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001H04_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712481 ID=CV712481; Name=CV712481; organism=Citrus sinensis; type=EST; length=571bp
CCCAATTCCAATAAGACCCCCACGCCTCATTAGCCCATACTGCTCCCGAA
AGAATACCTGTGGTTAAAAAGATAAATCCTAAACTAATAATACGATAACT
CCAACGATCCAATTGTTGAATCACTTGATACCTGTAATAATTTCTAGCGG
AAAGACTATTTAGAAAAACATTCTTTTTTTCGTTCATGTATTGGATTTCA
CTGAAACAAAATGACCCATTTACATGTACAAAATTTTTTCTTTTCAAAAA
AAGCCTTATCACTTTTCGAAATGTAATGACTAGAAGAGCCGTGGATAATA
ATGATCCACATAAAAGAGCTGCATAGCCCAATACCATCATACTTACGTGC
ATCATTAACCACTGGACTTGGAGAGCGGGTACTAATATTCTGGATTGATG
CATTTTGGTTAAAAAACCCGAAGTCGCAAAGCCTTGGGTAAAAAAAGCAC
TTGGTGCCGTTATAGCGCTTAAATGATTTTGATTATTTTTAAAATCAAAA
ATCTTATGAATAATAGATAAACTCCATGAAAGAAAGATTAATGATTCATA
TAAATCACTTAATGGGAAATG
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