CV712481

Overview
NameCV712481
Unique NameCV712481
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_PROM0 (Cytochrome c biogenesis protein ccsA OS=Prochlorococcus marinus (strain MIT 9301) GN=ccsA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.121e-17
Identity = 58/190 (30.53%), Postives = 90/190 (47.37%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFP+S+LYE              + + +     + +I  P       FA       +  S  LVPAL+  WL+MHVS+++L Y             L I   K +++   R +   + G F  S    +N+     + S+       +   ++LD  SYR I +GF+ LT G++SGAVWANEAWG++W+W
Sbjct:   70 HFPISNLYESLYFLAWGITLGQLLVEREYQAPIIPSIAIPIELLIVSFACFVLPEDLKSSSNLVPALRSSWLVMHVSVVMLSYAALIIGSLLSMSVLFINKNKPLQI---RSSSTGIGG-FKLSNSYPVND----LVESIE------FSHSEELDTLSYRSILIGFVLLTLGLISGAVWANEAWGTWWSW 245          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_SYNS3 (Cytochrome c biogenesis protein ccsA OS=Synechococcus sp. (strain CC9311) GN=ccsA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.077e-17
Identity = 61/198 (30.81%), Postives = 91/198 (45.96%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRL--------FLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFP+S+LYE              + +       ++A   P       FA+     ++ ++  LVPAL+  WL+MHVS++++ Y             LV      + L          +R       G+   SE+Q            LS+  + R ++   LD  SYR I++GF+ LT GI+SGAVWANEAWGSYW+W
Sbjct:   59 HFPISNLYESLCFLAWACTLTQLLVERSWPTPIVAAAATPMGLGCIAFASFALPDQLQEASPLVPALRSSWLVMHVSVIMVSYAALLVGSLLSVAVLVTDRGHALELRSSSIGSGGYRRAALATPLGNVGDSEVQ------------LSSVKFTRNEL---LDSLSYRTITVGFLLLTVGIISGAVWANEAWGSYWSW 241          
The following BLAST results are available for this feature:
BLAST of CV712481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
CCSA_PROM03.121e-1730.53Cytochrome c biogenesis protein ccsA OS=Prochloroc... [more]
CCSA_SYNS34.077e-1730.81Cytochrome c biogenesis protein ccsA OS=Synechococ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001H04_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712481 ID=CV712481; Name=CV712481; organism=Citrus sinensis; type=EST; length=571bp
CCCAATTCCAATAAGACCCCCACGCCTCATTAGCCCATACTGCTCCCGAA
AGAATACCTGTGGTTAAAAAGATAAATCCTAAACTAATAATACGATAACT
CCAACGATCCAATTGTTGAATCACTTGATACCTGTAATAATTTCTAGCGG
AAAGACTATTTAGAAAAACATTCTTTTTTTCGTTCATGTATTGGATTTCA
CTGAAACAAAATGACCCATTTACATGTACAAAATTTTTTCTTTTCAAAAA
AAGCCTTATCACTTTTCGAAATGTAATGACTAGAAGAGCCGTGGATAATA
ATGATCCACATAAAAGAGCTGCATAGCCCAATACCATCATACTTACGTGC
ATCATTAACCACTGGACTTGGAGAGCGGGTACTAATATTCTGGATTGATG
CATTTTGGTTAAAAAACCCGAAGTCGCAAAGCCTTGGGTAAAAAAAGCAC
TTGGTGCCGTTATAGCGCTTAAATGATTTTGATTATTTTTAAAATCAAAA
ATCTTATGAATAATAGATAAACTCCATGAAAGAAAGATTAATGATTCATA
TAAATCACTTAATGGGAAATG
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