CV712481

Overview
NameCV712481
Unique NameCV712481
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_PANGI (Cytochrome c biogenesis protein ccsA OS=Panax ginseng GN=ccsA PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.531e-56
Identity = 116/191 (60.73%), Postives = 131/191 (68.59%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS-LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFPLSDLYE           IH +  FK  + +LS ITA S  FTQGFATSG LT++HQS ILVPALQ +WL+MHVSMM+L Y             LVITFRK   +F KR     +N  F F EIQYMNE+ NV   +  SA+NYYR Q+IQQLD WSYR+ISLGFIFLT GILSGAVWANEAWGSYWNW
Sbjct:   65 HFPLSDLYESLIFLSWSLSVIHIVPYFKKKKKNLSTITASSVIFTQGFATSGLLTEIHQSAILVPALQSEWLIMHVSMMILSYAALLCGSLLSVALLVITFRKNRNIFCKRNPL--LNELFSFGEIQYMNERNNVLRTTFFSAKNYYRSQLIQQLDYWSYRVISLGFIFLTIGILSGAVWANEAWGSYWNW 253          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_OENEH (Cytochrome c biogenesis protein ccsA OS=Oenothera elata subsp. hookeri GN=ccsA PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 4.455e-56
Identity = 115/192 (59.90%), Postives = 133/192 (69.27%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFPLS+LYE           IH    FK  ++++  IT+ S  FTQG  TSG L++M QS ILVPALQ QWLMMHVSMMVLGY             LVITFRK +R+F K+K F  +  SF F EIQY NE  NV L++  +S++NYYR Q+IQQLDRWS RIISLGFIFLT GILSGAVWANEAWGSYWNW
Sbjct:   65 HFPLSNLYESLLFLSWSFAIIHMFPYFKKQKSYVRTITSSSTIFTQGLVTSGLLSEMQQSEILVPALQSQWLMMHVSMMVLGYAALLCGSLLSVALLVITFRKALRIFSKKKAF--LKDSFSFVEIQYRNEPSNVLLSTSFISSKNYYRAQLIQQLDRWSSRIISLGFIFLTIGILSGAVWANEAWGSYWNW 254          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_OENBI (Cytochrome c biogenesis protein ccsA OS=Oenothera biennis GN=ccsA PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 4.455e-56
Identity = 115/192 (59.90%), Postives = 133/192 (69.27%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFPLS+LYE           IH    FK  ++++  IT+ S  FTQG  TSG L++M QS ILVPALQ QWLMMHVSMMVLGY             LVITFRK +R+F K+K F  +  SF F EIQY NE  NV L++  +S++NYYR Q+IQQLDRWS RIISLGFIFLT GILSGAVWANEAWGSYWNW
Sbjct:   65 HFPLSNLYESLLFLSWSFAIIHMFPYFKKQKSYVRTITSSSTIFTQGLVTSGLLSEMQQSEILVPALQSQWLMMHVSMMVLGYAALLCGSLLSVALLVITFRKALRIFSKKKAF--LKDSFSFVEIQYRNEPSNVLLSTSFISSKNYYRAQLIQQLDRWSSRIISLGFIFLTIGILSGAVWANEAWGSYWNW 254          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_OLIPU (Cytochrome c biogenesis protein ccsA OS=Olimarabidopsis pumila GN=ccsA PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 5.819e-56
Identity = 119/197 (60.41%), Postives = 133/197 (67.51%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDF-KNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKR--KNFVHVNGSFCFSEIQYMNEKKNVFL----NSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFPLS+LYE           IH +  F K  QNHL+AITAPSA F QGFATSG L KM QS ILVPALQ QWLMMHVSMM+LGY             LVITFRKV   F K+  K  V +N  F F  + Y+NE+ ++ L    N   +RNYYRYQ+IQQLD WS+RIISLGFIFLT GILSGAVWANE WGSYWNW
Sbjct:   67 HFPLSNLYESLIFLSWAFSIIHMVSYFNKKQQNHLNAITAPSAIFIQGFATSGLLNKMPQSAILVPALQSQWLMMHVSMMILGYGALLCGSLLSIALLVITFRKVGPTFWKKNIKKNVLLNELFSFDVLYYINERNSILLQQNINFSFSRNYYRYQLIQQLDYWSFRIISLGFIFLTVGILSGAVWANETWGSYWNW 263          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_OENGL (Cytochrome c biogenesis protein ccsA OS=Oenothera glazioviana GN=ccsA PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 5.819e-56
Identity = 115/192 (59.90%), Postives = 132/192 (68.75%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFPLS+LYE           IH    FK   +++  IT+ S  FTQG  TSG L++M QS ILVPALQ QWLMMHVSMMVLGY             LVITFRK +R+F K+K F  +  SF F EIQY NE  NV L++  +S++NYYR Q+IQQLDRWS RIISLGFIFLT GILSGAVWANEAWGSYWNW
Sbjct:   65 HFPLSNLYESLLFLSWSFAIIHMFPYFKKQNSYVRTITSSSTIFTQGLVTSGLLSEMQQSEILVPALQSQWLMMHVSMMVLGYAALLCGSLLSVALLVITFRKALRIFSKKKAF--LKDSFSFVEIQYRNEPSNVLLSTSFISSKNYYRAQLIQQLDRWSSRIISLGFIFLTIGILSGAVWANEAWGSYWNW 254          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_DAUCA (Cytochrome c biogenesis protein ccsA OS=Daucus carota GN=ccsA PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 9.925e-56
Identity = 114/193 (59.07%), Postives = 131/193 (67.88%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKN-FVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            H PLSDLYE           IH +  FK N++HLS ITA S  FTQGFATSG LT++HQS ILVPALQ +WL+MHVSMM+LGY             LV+TFRK   L  K+    + +   F F EIQY+NE  N+F N+   S  NYYR Q+IQQLD WSYR+ISLGFIFLT GILSGAVWANEAWGSYWNW
Sbjct:   65 HLPLSDLYESLIFLSWSLSFIHIVPYFKKNKSHLSTITASSVIFTQGFATSGLLTEIHQSAILVPALQSEWLIMHVSMMILGYAALLCGSLLSVALLVLTFRKNRNLLCKKNPLLLKLTEEFSFGEIQYINEINNIFGNASFFSDNNYYRSQLIQQLDYWSYRVISLGFIFLTIGILSGAVWANEAWGSYWNW 257          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_DRIGR (Cytochrome c biogenesis protein ccsA OS=Drimys granadensis GN=ccsA PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.296e-55
Identity = 115/192 (59.90%), Postives = 135/192 (70.31%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSL--SARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFPLSDLYE           IH +    N++N LSAIT PSA FTQGFATS  LT+MHQS ILVPALQ QWLMMHVSMM+L Y             LVITFRK   + +K  N++ + G+F F EIQY+NEK++V  N+   S RNY+RY++ Q+LD WSYR+ISLGFIF T GILSGAVWANEAWGSYWNW
Sbjct:   65 HFPLSDLYESLMFLSWSFSIIHMVPKAGNHKNDLSAITGPSAIFTQGFATSDLLTEMHQSAILVPALQSQWLMMHVSMMLLSYAALLCGALLSVAFLVITFRKNTDIAVK-SNYLLI-GTFSFGEIQYLNEKRSVLQNTSFPSFRNYHRYRLTQRLDHWSYRVISLGFIFSTIGILSGAVWANEAWGSYWNW 254          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_SOYBN (Cytochrome c biogenesis protein ccsA OS=Glycine max GN=ccsA PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.693e-55
Identity = 113/195 (57.95%), Postives = 133/195 (68.21%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNH-LSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMN--EKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            H P SDLYE            + +  FK ++N+ L+ I  PS  FTQGFATSG LTKMH+S ILVPALQ  WLMMHVSMM+LGY             LVITF+++I++  K KNF  +N SF F+EI+YMN  +K NV   +  LS RNYYR Q +QQLDRW YR ISLGFIFLT GI+SGAVWANEAWGSYWNW
Sbjct:   66 HLPFSDLYESLIFLSWTFSIFYMVPYFKKSKNYYLNTIITPSVIFTQGFATSGLLTKMHESLILVPALQSHWLMMHVSMMILGYATLLCGSLLSVAILVITFQELIQIIGKSKNFYFLNESFSFAEIKYMNMTDKNNVLQKTSFLSYRNYYRSQFLQQLDRWGYRTISLGFIFLTIGIISGAVWANEAWGSYWNW 260          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_CALFG (Cytochrome c biogenesis protein ccsA OS=Calycanthus floridus var. glaucus GN=ccsA PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.693e-55
Identity = 117/194 (60.31%), Postives = 134/194 (69.07%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFL----NSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFPLSDLYE           IH +  F+N++N LSAITAPSA FTQGFATSG LT+MHQS ILVPALQ QWLMMHVSMM+LGY             LVITFRK + +  K  +F  + GSF F EI+Y NEK+   +    +  S RNY+RYQ+ Q+LD  SYRIISLGF F T GILSGAVWANEAWGSYWNW
Sbjct:   65 HFPLSDLYESLMFLSWSFSIIHMVPYFRNHKNSLSAITAPSAIFTQGFATSGLLTEMHQSAILVPALQSQWLMMHVSMMLLGYASLLCGSLLSVALLVITFRKTLGIPGKNNHF--LIGSFPFGEIRYFNEKRKRSVLKKTSFFSFRNYHRYQLTQRLDHCSYRIISLGFTFSTIGILSGAVWANEAWGSYWNW 256          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_CAPBU (Cytochrome c biogenesis protein ccsA OS=Capsella bursa-pastoris GN=ccsA PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 2.211e-55
Identity = 119/198 (60.10%), Postives = 134/198 (67.68%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDF-KNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLK---RKNFVHVNGSFCFSEIQYMNEKKNVFL----NSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFPLS+LYE           IH +  F K  QNHL+AITAPSA F QGFATSG L KM QS ILVPALQ QWLMMHVSMM+LGY             LVITFRKV   F K   +K F+ +N  F F  + Y+NE+ ++ L    N   +RNYYRYQ+IQQLD WS+RIISLGFIFLT GILSGAVWANE WGSYWNW
Sbjct:   67 HFPLSNLYESLIFLSWSFSIIHMVSYFNKKQQNHLNAITAPSAIFIQGFATSGLLNKMPQSAILVPALQSQWLMMHVSMMILGYGALLCGSLLSIALLVITFRKVGPTFWKKNIKKKFL-LNELFSFDVLYYINERNSILLQQNINFSFSRNYYRYQLIQQLDFWSFRIISLGFIFLTVGILSGAVWANETWGSYWNW 263          
The following BLAST results are available for this feature:
BLAST of CV712481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
CCSA_PANGI1.531e-5660.73Cytochrome c biogenesis protein ccsA OS=Panax gins... [more]
CCSA_OENEH4.455e-5659.90Cytochrome c biogenesis protein ccsA OS=Oenothera ... [more]
CCSA_OENBI4.455e-5659.90Cytochrome c biogenesis protein ccsA OS=Oenothera ... [more]
CCSA_OLIPU5.819e-5660.41Cytochrome c biogenesis protein ccsA OS=Olimarabid... [more]
CCSA_OENGL5.819e-5659.90Cytochrome c biogenesis protein ccsA OS=Oenothera ... [more]
CCSA_DAUCA9.925e-5659.07Cytochrome c biogenesis protein ccsA OS=Daucus car... [more]
CCSA_DRIGR1.296e-5559.90Cytochrome c biogenesis protein ccsA OS=Drimys gra... [more]
CCSA_SOYBN1.693e-5557.95Cytochrome c biogenesis protein ccsA OS=Glycine ma... [more]
CCSA_CALFG1.693e-5560.31Cytochrome c biogenesis protein ccsA OS=Calycanthu... [more]
CCSA_CAPBU2.211e-5560.10Cytochrome c biogenesis protein ccsA OS=Capsella b... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001H04_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712481 ID=CV712481; Name=CV712481; organism=Citrus sinensis; type=EST; length=571bp
CCCAATTCCAATAAGACCCCCACGCCTCATTAGCCCATACTGCTCCCGAA
AGAATACCTGTGGTTAAAAAGATAAATCCTAAACTAATAATACGATAACT
CCAACGATCCAATTGTTGAATCACTTGATACCTGTAATAATTTCTAGCGG
AAAGACTATTTAGAAAAACATTCTTTTTTTCGTTCATGTATTGGATTTCA
CTGAAACAAAATGACCCATTTACATGTACAAAATTTTTTCTTTTCAAAAA
AAGCCTTATCACTTTTCGAAATGTAATGACTAGAAGAGCCGTGGATAATA
ATGATCCACATAAAAGAGCTGCATAGCCCAATACCATCATACTTACGTGC
ATCATTAACCACTGGACTTGGAGAGCGGGTACTAATATTCTGGATTGATG
CATTTTGGTTAAAAAACCCGAAGTCGCAAAGCCTTGGGTAAAAAAAGCAC
TTGGTGCCGTTATAGCGCTTAAATGATTTTGATTATTTTTAAAATCAAAA
ATCTTATGAATAATAGATAAACTCCATGAAAGAAAGATTAATGATTCATA
TAAATCACTTAATGGGAAATG
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