CV712481

Overview
NameCV712481
Unique NameCV712481
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_HELAN (Cytochrome c biogenesis protein ccsA OS=Helianthus annuus GN=ccsA PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 5.097e-52
Identity = 107/192 (55.73%), Postives = 126/192 (65.62%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFPLSDLYE           IH +  FK  +N L+ ITA    FTQGFATSG L ++H+  ILVPALQ +WL+MHVSMM+L Y             LVITFR +     K  N + +N SF F EIQY NE+ N+F  +   S +NYY+ Q IQQLD WSYR+ISLGFIFLT GILSGAVWANEAWGSYW+W
Sbjct:   65 HFPLSDLYESLIFLSWSFSLIHIVPYFKIRKNDLTTITASITIFTQGFATSGLLNEIHKPTILVPALQSEWLIMHVSMMILSYAALLCGSLLSVALLVITFRNIF-YSSKSNNLLKLNESFSFGEIQYKNERNNIFQKTSFFSDKNYYKAQFIQQLDYWSYRVISLGFIFLTIGILSGAVWANEAWGSYWSW 255          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_AMBTC (Cytochrome c biogenesis protein ccsA OS=Amborella trichopoda GN=ccsA PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 5.097e-52
Identity = 107/191 (56.02%), Postives = 128/191 (67.02%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLN-SLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            H PLS+LYE           IH I   +N++N LS+ITAPSA  TQGF TSG LT+MHQS ILVPALQ  WL+MHVSMM+L Y             LVITFRK + +      F+ +   F F EIQY+NEK+++  N S S RNY++YQ+ QQLD WSYR+I +GF  LT GILSGAVWANEAWGSYWNW
Sbjct:   64 HLPLSNLYESLIFLSWGFSLIHMISKIQNHKNFLSSITAPSAILTQGFVTSGLLTEMHQSAILVPALQSHWLIMHVSMMLLSYAALLCGSLLSIALLVITFRKKLDII-----FLLIR-LFSFGEIQYLNEKRSILQNTSFSFRNYHKYQLTQQLDHWSYRVIGIGFTLLTLGILSGAVWANEAWGSYWNW 248          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_TOBAC (Cytochrome c biogenesis protein ccsA OS=Nicotiana tabacum GN=ccsA PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 8.695e-52
Identity = 115/192 (59.90%), Postives = 126/192 (65.62%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFPLSDLYE           IH I  FK N   LS IT PSA FTQGFATSG LT++HQS ILVPALQ +WL+MHVSMM+LGY             LVITFRK  +LF K   F  +N SF   E        NV  N+   SA+NYYR Q+IQQLD WSYR+ISLGF FLT GILSGAVWANEAWGSYWNW
Sbjct:   65 HFPLSDLYESLIFLSWSFSLIHIIPYFKKNVLILSKITGPSAIFTQGFATSGILTEIHQSVILVPALQSEWLIMHVSMMILGYAALLCGSLLSVALLVITFRKNRQLFYKSNGF--LNESFFLGE--------NVLQNTSFFSAKNYYRSQLIQQLDYWSYRVISLGFTFLTIGILSGAVWANEAWGSYWNW 246          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_PHAVU (Cytochrome c biogenesis protein ccsA OS=Phaseolus vulgaris GN=ccsA PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 8.695e-52
Identity = 107/198 (54.04%), Postives = 127/198 (64.14%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNH-LSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQY--MNEKKNV-----FLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            H P S+LYE            + +   K  +N+  + I  PS  FTQGFATSG LT+MHQS ILVPALQ  WLMMHVSMM+LGY             LVITF+++I +  K K F   N +  F+EI+Y  MN+KKN+     F++  S  NYYRYQ IQQLDRW YR ISLGFIFLT G +SGAVWANEAWGSYWNW
Sbjct:   66 HLPFSNLYESLIFLSWTFSIFYMVLCLKKKKNYYFNTIITPSILFTQGFATSGLLTEMHQSLILVPALQSHWLMMHVSMMILGYTTLLCGSLLSVAILVITFQELIHMIGKSKTFFFFNETLSFAEIKYMNMNDKKNLLQKTPFMSDSSYINYYRYQFIQQLDRWGYRTISLGFIFLTVGNISGAVWANEAWGSYWNW 263          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_NICSY (Cytochrome c biogenesis protein ccsA OS=Nicotiana sylvestris GN=ccsA PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 8.695e-52
Identity = 115/192 (59.90%), Postives = 126/192 (65.62%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFPLSDLYE           IH I  FK N   LS IT PSA FTQGFATSG LT++HQS ILVPALQ +WL+MHVSMM+LGY             LVITFRK  +LF K   F  +N SF   E        NV  N+   SA+NYYR Q+IQQLD WSYR+ISLGF FLT GILSGAVWANEAWGSYWNW
Sbjct:   65 HFPLSDLYESLIFLSWSFSLIHIIPYFKKNVLILSKITGPSAIFTQGFATSGILTEIHQSVILVPALQSEWLIMHVSMMILGYAALLCGSLLSVALLVITFRKNRQLFYKSNGF--LNESFFLGE--------NVLQNTSFFSAKNYYRSQLIQQLDYWSYRVISLGFTFLTIGILSGAVWANEAWGSYWNW 246          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_NUPAD (Cytochrome c biogenesis protein ccsA OS=Nuphar advena GN=ccsA PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 3.304e-51
Identity = 108/190 (56.84%), Postives = 124/190 (65.26%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            H PLSDLYE           IH +  F+N +N+ S ITAPSA  TQGFATSG LTKMHQS ILVPALQ +WLMMHVSMM+L Y             LVITFR+ I +  K  +   +  SF F EIQY+N         +S RNY+RYQ+ Q+LD WSYR+I LGF  LT GILSGAVWANEAWGSYWNW
Sbjct:   64 HVPLSDLYESLMFLSWSFSFIHIVPYFRNYKNYFSTITAPSAILTQGFATSGLLTKMHQSAILVPALQSRWLMMHVSMMLLSYAALLCGSLLSITLLVITFRRNIDIIGKTNHL--LISSFSFDEIQYLN---------VSFRNYHRYQLTQRLDHWSYRVIGLGFTLLTIGILSGAVWANEAWGSYWNW 242          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_NICTO (Cytochrome c biogenesis protein ccsA OS=Nicotiana tomentosiformis GN=ccsA PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 3.304e-51
Identity = 113/190 (59.47%), Postives = 125/190 (65.79%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFPLSDLYE           IH I  FK N   LS I  PSA FTQGFATSG LT++HQS ILVPALQ +WL+MHVSMM+LGY             LVITFRK  +LF K   F  +N SF   E    N  +N +    SA+NYYR Q+IQQLD WSYR+ISLGF FLT GILSGAVWANEAWGSYWNW
Sbjct:   65 HFPLSDLYESLIFLSWSFSLIHIIPYFKKNVLILSKIIGPSAIFTQGFATSGILTEIHQSVILVPALQSEWLIMHVSMMILGYAALLCGSLLSVALLVITFRKNRQLFYKSNGF--LNESFFLGE----NVLQNTYF--FSAKNYYRSQLIQQLDYWSYRVISLGFTFLTIGILSGAVWANEAWGSYWNW 246          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_SOLTU (Cytochrome c biogenesis protein ccsA OS=Solanum tuberosum GN=ccsA PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.640e-50
Identity = 113/192 (58.85%), Postives = 124/192 (64.58%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFPLSDLYE           IH I  FK N   LS IT PSA  TQGFATSG LT++HQS ILVPALQ +WL+MHVSMM+LGY             LVITFRK  +LF K   F  +N SF   E        NV  N+    A+NYYR Q+IQQLD WSYR+ISLGF FLT GILSGAVWANEAWGSYWNW
Sbjct:   65 HFPLSDLYESLIFLSWSFSLIHIIPYFKKNVLILSKITGPSAILTQGFATSGILTEIHQSGILVPALQSEWLIMHVSMMILGYAALLCGSLLSVALLVITFRKNRKLFYKSNGF--LNESFFLGE--------NVVENTSFFCAKNYYRSQLIQQLDYWSYRVISLGFTFLTIGILSGAVWANEAWGSYWNW 246          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_SOLBU (Cytochrome c biogenesis protein ccsA OS=Solanum bulbocastanum GN=ccsA PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.640e-50
Identity = 113/192 (58.85%), Postives = 124/192 (64.58%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFPLSDLYE           IH I  FK N   LS IT PSA  TQGFATSG LT++HQS ILVPALQ +WL+MHVSMM+LGY             LVITFRK  +LF K   F  +N SF   E        NV  N+    A+NYYR Q+IQQLD WSYR+ISLGF FLT GILSGAVWANEAWGSYWNW
Sbjct:   65 HFPLSDLYESLIFLSWSFSLIHIIPYFKKNVLILSKITGPSAILTQGFATSGILTEIHQSGILVPALQSEWLIMHVSMMILGYAALLCGSLLSVALLVITFRKNRKLFYKSNGF--LNESFFLGE--------NVVENTSFFCAKNYYRSQLIQQLDYWSYRVISLGFTFLTIGILSGAVWANEAWGSYWNW 246          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_NYMAL (Cytochrome c biogenesis protein ccsA OS=Nymphaea alba GN=ccsA PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.640e-50
Identity = 108/190 (56.84%), Postives = 122/190 (64.21%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            H PLSDLYE           IH +  F+N +N  S ITAPSA  TQGFATSG LTKMHQS ILVPALQ +WLMMHVSMM+L Y             LVITFR+ I +F K  +   +  SF F E QY+N          S RNY+RYQ+ Q+LD WSYR+I LGF  LT GILSGAVWANEAWGSYWNW
Sbjct:   64 HVPLSDLYESLMFLSWSFSLIHIVPYFRNYKNFFSKITAPSAILTQGFATSGLLTKMHQSAILVPALQSRWLMMHVSMMLLSYAALLCGSLLSITLLVITFRRKIDIFGKTNHL--LISSFSFDETQYVN---------FSFRNYHRYQLTQRLDYWSYRVIGLGFTLLTIGILSGAVWANEAWGSYWNW 242          
The following BLAST results are available for this feature:
BLAST of CV712481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
CCSA_HELAN5.097e-5255.73Cytochrome c biogenesis protein ccsA OS=Helianthus... [more]
CCSA_AMBTC5.097e-5256.02Cytochrome c biogenesis protein ccsA OS=Amborella ... [more]
CCSA_TOBAC8.695e-5259.90Cytochrome c biogenesis protein ccsA OS=Nicotiana ... [more]
CCSA_PHAVU8.695e-5254.04Cytochrome c biogenesis protein ccsA OS=Phaseolus ... [more]
CCSA_NICSY8.695e-5259.90Cytochrome c biogenesis protein ccsA OS=Nicotiana ... [more]
CCSA_NUPAD3.304e-5156.84Cytochrome c biogenesis protein ccsA OS=Nuphar adv... [more]
CCSA_NICTO3.304e-5159.47Cytochrome c biogenesis protein ccsA OS=Nicotiana ... [more]
CCSA_SOLTU1.640e-5058.85Cytochrome c biogenesis protein ccsA OS=Solanum tu... [more]
CCSA_SOLBU1.640e-5058.85Cytochrome c biogenesis protein ccsA OS=Solanum bu... [more]
CCSA_NYMAL1.640e-5056.84Cytochrome c biogenesis protein ccsA OS=Nymphaea a... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001H04_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712481 ID=CV712481; Name=CV712481; organism=Citrus sinensis; type=EST; length=571bp
CCCAATTCCAATAAGACCCCCACGCCTCATTAGCCCATACTGCTCCCGAA
AGAATACCTGTGGTTAAAAAGATAAATCCTAAACTAATAATACGATAACT
CCAACGATCCAATTGTTGAATCACTTGATACCTGTAATAATTTCTAGCGG
AAAGACTATTTAGAAAAACATTCTTTTTTTCGTTCATGTATTGGATTTCA
CTGAAACAAAATGACCCATTTACATGTACAAAATTTTTTCTTTTCAAAAA
AAGCCTTATCACTTTTCGAAATGTAATGACTAGAAGAGCCGTGGATAATA
ATGATCCACATAAAAGAGCTGCATAGCCCAATACCATCATACTTACGTGC
ATCATTAACCACTGGACTTGGAGAGCGGGTACTAATATTCTGGATTGATG
CATTTTGGTTAAAAAACCCGAAGTCGCAAAGCCTTGGGTAAAAAAAGCAC
TTGGTGCCGTTATAGCGCTTAAATGATTTTGATTATTTTTAAAATCAAAA
ATCTTATGAATAATAGATAAACTCCATGAAAGAAAGATTAATGATTCATA
TAAATCACTTAATGGGAAATG
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