CV712481

Overview
NameCV712481
Unique NameCV712481
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_TRACE (Cytochrome c biogenesis protein ccsA OS=Trachelium caeruleum GN=ccsA PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 6.448e-47
Identity = 102/192 (53.12%), Postives = 126/192 (65.62%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFPLS+LYE           IH +   K N+N LS ITA S  FTQGFATSG LT++++S ILVPALQ +WL+MHVSMM+L Y             LVIT RK      K    + +  S  F +IQY N++ ++F  +   S +NYY+ Q++QQLD WSYR+ISLGFIFLT GILSGAVWANEAWGSYW+W
Sbjct:   65 HFPLSNLYESLIFLSWSFSLIHIVAYLKKNKN-LSRITASSTIFTQGFATSGLLTEINKSGILVPALQSEWLIMHVSMMILSYAALLCGSLLSAALLVITCRK------KFNELLRLIESLSFDKIQYRNQRIHLFGKTYFFSVKNYYKIQLVQQLDYWSYRVISLGFIFLTMGILSGAVWANEAWGSYWSW 249          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_LOLPR (Cytochrome c biogenesis protein ccsA OS=Lolium perenne GN=ccsA PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.437e-46
Identity = 99/190 (52.11%), Postives = 119/190 (62.63%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFPLS+LYE           +H I   +N++N LS IT PS   TQGFATSG LT+MHQS ILVPALQ QWLMMHVSMM+L Y             L+I FR     F K+K  V +  +F FS+  Y+        +  S  NYY+YQ+ ++LD WSYR+ISLGF  LT GIL GAVWAN+AWGSYWNW
Sbjct:   65 HFPLSNLYESLIFLSWALYILHTIPKIQNSKNDLSTITTPSTILTQGFATSGLLTEMHQSTILVPALQSQWLMMHVSMMLLSYATLLCGSLLSAAILIIRFRNNFFFFSKKKKNVLLK-TFFFSDF-YVKRSSLKSTSVPSFPNYYKYQLTERLDSWSYRVISLGFTLLTIGILCGAVWANDAWGSYWNW 252          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_CUSEX (Cytochrome c biogenesis protein ccsA OS=Cuscuta exaltata GN=ccsA PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.216e-45
Identity = 100/190 (52.63%), Postives = 122/190 (64.21%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFPLSDL E           IH I  F  N   LS IT+ S  FTQGFATSG LT++ +S ILVPALQ +WL+MHVS+M+LGY             +VITFRK  + F K K+F+       F+EI Y    K +F+   +  NYY+ Q+IQ+LD WSY++I LGFIFLT GILSGAVWANEAWGSYW+W
Sbjct:   65 HFPLSDLSESLIFLSWSFALIHSIAYFTKNTKLLSTITSQSTVFTQGFATSGILTEIQKSSILVPALQSEWLIMHVSLMILGYAALLCGSLLSVALMVITFRKDGKFFSKSKDFL-------FTEIFY----KKIFV--FNYNNYYKTQLIQELDFWSYQVIGLGFIFLTIGILSGAVWANEAWGSYWSW 241          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_CUSRE (Cytochrome c biogenesis protein ccsA OS=Cuscuta reflexa GN=ccsA PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.588e-45
Identity = 100/190 (52.63%), Postives = 119/190 (62.63%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFPLSDL E           IH I  F  N   LS IT+ S  FTQGFATSG LTK+ +S IL+PAL+ +WL+MHVS+M+LGY             +VIT R   + F K  NF+       F EI Y N  KN F     A NYY+ Q+I++LD WSY++ISLGFIFLT GILSGAVWANEAWGSYW+W
Sbjct:   65 HFPLSDLSESLIFLSWSFALIHSIGYFTKNLKFLSTITSQSTLFTQGFATSGILTKIQKSSILIPALKSEWLIMHVSLMILGYAALLCGSLLSVALMVITVRNDGKFFFKSNNFL-------FREISYQN--KNFFY----AINYYKTQLIKELDFWSYQVISLGFIFLTIGILSGAVWANEAWGSYWSW 241          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_MARPO (Cytochrome c biogenesis protein ccsA OS=Marchantia polymorpha GN=ccsA PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.592e-37
Identity = 88/193 (45.60%), Postives = 108/193 (55.96%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS---LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFPLS+LYE           IH I + K+    L  ITAPSA  T GFAT     +M +S  LVPALQ  WLMMHV+MM+L Y             L+IT  K   L +    F     SF F  +    E + +   +    S  N+ ++Q+I++LD WSYR+ISLGF  LT GILSGAVWANEAWGSYWNW
Sbjct:   65 HFPLSNLYESSMFLSWSFTLIHLILENKSKNTWLGIITAPSAMLTHGFATLSLPKEMQESVFLVPALQSHWLMMHVTMMMLSYSTLLCGSLLAITILIITLTKQKNLPILTSYFNFPFNSFIFKNLLQPMENEILSYKTQKVFSFINFRKWQLIKELDNWSYRVISLGFPLLTIGILSGAVWANEAWGSYWNW 257          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_CYCTA (Cytochrome c biogenesis protein ccsA OS=Cycas taitungensis GN=ccsA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.121e-36
Identity = 90/199 (45.23%), Postives = 115/199 (57.79%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNH-LSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRK---VIRLFLKRKN-----FVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            H PLS+LYE           IH I + ++ ++  L AITAPS   T GFATSG   +M QS +LVPALQ  WLMMHVSM++L Y             L+ITFR+   ++ L   R N     F   N  +     Q  ++ +N F   LS  N+ + ++ QQLD WSYR+I LGF+ LT GILSGAVWANEAWGS W+W
Sbjct:   64 HLPLSNLYESFMFLSWSSSVIHIILEVRSQKDRGLGAITAPSTMLTHGFATSGLPKEMQQSAMLVPALQSHWLMMHVSMILLSYATLLCGSLSSIAFLIITFRRNRRILSLLSARDNSFIWPFPSRNNLYLHE--QEKSDLQNTFY--LSFTNHRKCKLTQQLDYWSYRVIGLGFLLLTIGILSGAVWANEAWGSRWSW 258          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_PINTH (Cytochrome c biogenesis protein ccsA OS=Pinus thunbergii GN=ccsA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.798e-31
Identity = 85/206 (41.26%), Postives = 106/206 (51.46%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNH-LSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITF---RKVI---------RLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS---LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            H PLS+LYE            H + + ++  +  L AITAPSA  T GFAT G   +M +S +LVPALQ  W MMHVSM++  Y             LVI     R+VI         R  L  +NF             Y +EK+   L      S+ NY + Q+I+QLD WSYR I LGF   T G LSGA+WANEAWGSYW+W
Sbjct:   64 HLPLSNLYESFMFLSWSSSVFHILLEVRSRDDRWLGAITAPSAMLTHGFATLGLPEEMQRSGMLVPALQSHWSMMHVSMILFSYATLLCGSLASIALLVIMSGVNRQVIFGAMDNLFSRAILPNENF-------------YSHEKQKSDLQYTVYFSSTNYRKCQLIKQLDHWSYRAIGLGFSLSTIGTLSGAIWANEAWGSYWSW 256          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_WELMI (Cytochrome c biogenesis protein ccsA OS=Welwitschia mirabilis GN=ccsA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.105e-30
Identity = 78/191 (40.84%), Postives = 98/191 (51.31%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKN-NQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            H PLS+LYE           I    D KN N   +  ITAPSA FT  FAT     +M QS+ L+PALQ  WL+MHV+++ LGY             L I   K +  F              +   +Y  E K    +  S +N+ + Q+I Q+D  SY  I +GF FLT GILSGAVWANEAWGSYW+W
Sbjct:   64 HLPLSNLYESLMFFSWNFCLIPFFIDIKNPNTQWIGVITAPSALFTHAFATLILPIEMQQSQRLIPALQSHWLIMHVTIIFLGYVTLLCGSLSSIALLAINLEKKLSFFT------------LYFRKEYSYENKRKAFHPYSFKNFRKSQMIHQIDNLSYYTIVIGFTFLTIGILSGAVWANEAWGSYWSW 242          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_HETA4 (Cytochrome c biogenesis protein ccsA OS=Heterosigma akashiwo (strain CCMP452) GN=ccsA PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.484e-30
Identity = 75/191 (39.27%), Postives = 103/191 (53.93%), Query Frame = -1
Query:    2 FPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVI-TFRKVIRLFLKRKNFVHVNGSFCFSEIQY-MNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 568
            FPLS+LYE           I++  +FK     + A+  P     QGFA+    T M +S  LVPALQ  WLM+HVSMM+L Y             LV+   +K++     ++ FV  N  F  +   + +N+  N+   + + R     ++I  LD WSYR I +GF FLT GI+SGAVWANEAWGSYW+W
Sbjct:   73 FPLSNLYESLMFLSCLLLFIYQFIEFKTRSRVIGALVLPLIVLVQGFASLSLPTAMQKSSPLVPALQSNWLMLHVSMMMLSYATLLLGSLFSILYLVLYKDKKILTKKSIKEQFVEENFVFQLTTSAFSLNQTSNIITEAKTDRQ----RLILSLDNWSYRTIGIGFPFLTMGIISGAVWANEAWGSYWSW 259          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_HETA2 (Cytochrome c biogenesis protein ccsA OS=Heterosigma akashiwo (strain NIES-293) GN=ccsA PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.484e-30
Identity = 75/191 (39.27%), Postives = 103/191 (53.93%), Query Frame = -1
Query:    2 FPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVI-TFRKVIRLFLKRKNFVHVNGSFCFSEIQY-MNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 568
            FPLS+LYE           I++  +FK     + A+  P     QGFA+    T M +S  LVPALQ  WLM+HVSMM+L Y             LV+   +K++     ++ FV  N  F  +   + +N+  N+   + + R     ++I  LD WSYR I +GF FLT GI+SGAVWANEAWGSYW+W
Sbjct:   73 FPLSNLYESLMFLSCLLLFIYQFIEFKTRSRVIGALVLPLIVLVQGFASLSLPTAMQKSSPLVPALQSNWLMLHVSMMMLSYATLLLGSLFSILYLVLYKDKKILTKKSIKEQFVEENFVFQLTTSAFSLNQTSNIITEAKTDRQ----RLILSLDNWSYRTIGIGFPFLTMGIISGAVWANEAWGSYWSW 259          
The following BLAST results are available for this feature:
BLAST of CV712481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
CCSA_TRACE6.448e-4753.13Cytochrome c biogenesis protein ccsA OS=Trachelium... [more]
CCSA_LOLPR1.437e-4652.11Cytochrome c biogenesis protein ccsA OS=Lolium per... [more]
CCSA_CUSEX1.216e-4552.63Cytochrome c biogenesis protein ccsA OS=Cuscuta ex... [more]
CCSA_CUSRE1.588e-4552.63Cytochrome c biogenesis protein ccsA OS=Cuscuta re... [more]
CCSA_MARPO1.592e-3745.60Cytochrome c biogenesis protein ccsA OS=Marchantia... [more]
CCSA_CYCTA5.121e-3645.23Cytochrome c biogenesis protein ccsA OS=Cycas tait... [more]
CCSA_PINTH3.798e-3141.26Cytochrome c biogenesis protein ccsA OS=Pinus thun... [more]
CCSA_WELMI1.105e-3040.84Cytochrome c biogenesis protein ccsA OS=Welwitschi... [more]
CCSA_HETA45.484e-3039.27Cytochrome c biogenesis protein ccsA OS=Heterosigm... [more]
CCSA_HETA25.484e-3039.27Cytochrome c biogenesis protein ccsA OS=Heterosigm... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001H04_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712481 ID=CV712481; Name=CV712481; organism=Citrus sinensis; type=EST; length=571bp
CCCAATTCCAATAAGACCCCCACGCCTCATTAGCCCATACTGCTCCCGAA
AGAATACCTGTGGTTAAAAAGATAAATCCTAAACTAATAATACGATAACT
CCAACGATCCAATTGTTGAATCACTTGATACCTGTAATAATTTCTAGCGG
AAAGACTATTTAGAAAAACATTCTTTTTTTCGTTCATGTATTGGATTTCA
CTGAAACAAAATGACCCATTTACATGTACAAAATTTTTTCTTTTCAAAAA
AAGCCTTATCACTTTTCGAAATGTAATGACTAGAAGAGCCGTGGATAATA
ATGATCCACATAAAAGAGCTGCATAGCCCAATACCATCATACTTACGTGC
ATCATTAACCACTGGACTTGGAGAGCGGGTACTAATATTCTGGATTGATG
CATTTTGGTTAAAAAACCCGAAGTCGCAAAGCCTTGGGTAAAAAAAGCAC
TTGGTGCCGTTATAGCGCTTAAATGATTTTGATTATTTTTAAAATCAAAA
ATCTTATGAATAATAGATAAACTCCATGAAAGAAAGATTAATGATTCATA
TAAATCACTTAATGGGAAATG
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