CV712479
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV712479 vs. ExPASy Swiss-Prot
Match: H2A_RHYAM (Histone H2A OS=Rhynchosciara americana GN=His2A PE=3 SV=2) HSP 1 Score: 112.849 bits (281), Expect = 1.326e-24 Identity = 62/108 (57.41%), Postives = 78/108 (72.22%), Query Frame = 3 Query: 210 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 530 SRS+RAGLQFPVGR+HRLL++ Y AA++EYL AEVLELAGNA++D K RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I L+ K +++ Sbjct: 16 SRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPV-YLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 122
BLAST of CV712479 vs. ExPASy Swiss-Prot
Match: H2A_DROYA (Histone H2A OS=Drosophila yakuba GN=His2A PE=2 SV=2) HSP 1 Score: 112.849 bits (281), Expect = 1.326e-24 Identity = 62/108 (57.41%), Postives = 78/108 (72.22%), Query Frame = 3 Query: 210 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 530 SRS+RAGLQFPVGR+HRLL++ Y AA++EYL AEVLELAGNA++D K RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I L+ K +++ Sbjct: 16 SRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPV-YLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 122
BLAST of CV712479 vs. ExPASy Swiss-Prot
Match: H2A_DROSI (Histone H2A OS=Drosophila simulans GN=His2A PE=3 SV=2) HSP 1 Score: 112.849 bits (281), Expect = 1.326e-24 Identity = 62/108 (57.41%), Postives = 78/108 (72.22%), Query Frame = 3 Query: 210 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 530 SRS+RAGLQFPVGR+HRLL++ Y AA++EYL AEVLELAGNA++D K RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I L+ K +++ Sbjct: 16 SRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPV-YLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 122
BLAST of CV712479 vs. ExPASy Swiss-Prot
Match: H2A_DROME (Histone H2A OS=Drosophila melanogaster GN=His2A PE=1 SV=2) HSP 1 Score: 112.849 bits (281), Expect = 1.326e-24 Identity = 62/108 (57.41%), Postives = 78/108 (72.22%), Query Frame = 3 Query: 210 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 530 SRS+RAGLQFPVGR+HRLL++ Y AA++EYL AEVLELAGNA++D K RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I L+ K +++ Sbjct: 16 SRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPV-YLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 122
BLAST of CV712479 vs. ExPASy Swiss-Prot
Match: H2A_DROHY (Histone H2A OS=Drosophila hydei GN=His2A PE=3 SV=2) HSP 1 Score: 112.849 bits (281), Expect = 1.326e-24 Identity = 62/108 (57.41%), Postives = 78/108 (72.22%), Query Frame = 3 Query: 210 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 530 SRS+RAGLQFPVGR+HRLL++ Y AA++EYL AEVLELAGNA++D K RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I L+ K +++ Sbjct: 16 SRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPV-YLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 122
BLAST of CV712479 vs. ExPASy Swiss-Prot
Match: H2A_DROER (Histone H2A OS=Drosophila erecta GN=His2A PE=3 SV=2) HSP 1 Score: 112.849 bits (281), Expect = 1.326e-24 Identity = 62/108 (57.41%), Postives = 78/108 (72.22%), Query Frame = 3 Query: 210 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 530 SRS+RAGLQFPVGR+HRLL++ Y AA++EYL AEVLELAGNA++D K RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I L+ K +++ Sbjct: 16 SRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPV-YLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 122
BLAST of CV712479 vs. ExPASy Swiss-Prot
Match: H2A_AGABI (Histone H2A OS=Agaricus bisporus PE=2 SV=3) HSP 1 Score: 112.849 bits (281), Expect = 1.326e-24 Identity = 65/109 (59.63%), Postives = 78/109 (71.56%), Query Frame = 3 Query: 207 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLI-NKSSK 527 +SRSS+AGLQFPVGRVHRLLK+ Y AA+LEYL AE+LELAGNA++D K +RI PRHLQLAIR DEEL L+ I+ GGV+PHI L+ +KSSK Sbjct: 21 MSRSSKAGLQFPVGRVHRLLKKGNYAQRVGAGAPV-YMAAVLEYLAAEILELAGNAARDNKKQRIVPRHLQLAIRNDEELHKLLGNVVISQGGVVPHIAPELLPSKSSK 128
BLAST of CV712479 vs. ExPASy Swiss-Prot
Match: H2A2_LODEL (Histone H2A.2 OS=Lodderomyces elongisporus GN=HTA2 PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.326e-24 Identity = 62/106 (58.49%), Postives = 77/106 (72.64%), Query Frame = 3 Query: 210 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSS 524 SRSS+AGL FPVGRVHR L+ Y A++LEYLTAE+LELAGNA++D K RI PRHLQLAIR DEEL+ L+ + TIA GGV+P+IH++L+ K S Sbjct: 20 SRSSKAGLTFPVGRVHRFLRNGNYAQRIGSSAPV-YLASVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGQVTIAQGGVMPYIHQNLLPKKS 124
BLAST of CV712479 vs. ExPASy Swiss-Prot
Match: H2A_STRPU (Histone H2A, embryonic OS=Strongylocentrotus purpuratus PE=1 SV=2) HSP 1 Score: 112.464 bits (280), Expect = 1.732e-24 Identity = 62/106 (58.49%), Postives = 76/106 (71.70%), Query Frame = 3 Query: 210 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 524 +RSSRAGLQFPVGRVHR L++ Y AA+LEYLTAE+LELAGNA++D K RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I L+ K + Sbjct: 16 TRSSRAGLQFPVGRVHRFLRKGNYAKRVGGGAPV-YMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 120
BLAST of CV712479 vs. ExPASy Swiss-Prot
Match: H2A_COCIM (Histone H2A OS=Coccidioides immitis GN=HTA1 PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 1.732e-24 Identity = 64/114 (56.14%), Postives = 80/114 (70.18%), Query Frame = 3 Query: 210 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSSKE*FVTPS 548 SRSS+AGL FPVGRVHRLL++ Y AA+LEYL AE+LELAGNA++D K RI PRHLQLAIR DEEL+ L+ TIA GGV+P+IH++L+ K + + PS Sbjct: 18 SRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPV-YLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVMPYIHQNLLPKKTPKTGKNPS 130 The following BLAST results are available for this feature:
BLAST of CV712479 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 241
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Sequences
The
following sequences are available for this feature:
EST sequence >CV712479 ID=CV712479; Name=CV712479; organism=Citrus sinensis; type=EST; length=607bpback to top |