CV712479

Overview
NameCV712479
Unique NameCV712479
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712479 vs. ExPASy Swiss-Prot
Match: H2A_MYTGA (Histone H2A OS=Mytilus galloprovincialis PE=3 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 2.671e-25
Identity = 64/108 (59.26%), Postives = 78/108 (72.22%), Query Frame = 3
Query:  210 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 530
            SRSSRAGLQFPVGR+HRLL++              Y AA+LEYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K +++
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPV-YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQK 122          
BLAST of CV712479 vs. ExPASy Swiss-Prot
Match: H2A_MYTED (Histone H2A OS=Mytilus edulis PE=3 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 2.671e-25
Identity = 64/108 (59.26%), Postives = 78/108 (72.22%), Query Frame = 3
Query:  210 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 530
            SRSSRAGLQFPVGR+HRLL++              Y AA+LEYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K +++
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPV-YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQK 122          
BLAST of CV712479 vs. ExPASy Swiss-Prot
Match: H2A_MYTCH (Histone H2A OS=Mytilus chilensis PE=3 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 2.671e-25
Identity = 64/108 (59.26%), Postives = 78/108 (72.22%), Query Frame = 3
Query:  210 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 530
            SRSSRAGLQFPVGR+HRLL++              Y AA+LEYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K +++
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPV-YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQK 122          
BLAST of CV712479 vs. ExPASy Swiss-Prot
Match: H2A_MYTCA (Histone H2A OS=Mytilus californianus PE=3 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 2.671e-25
Identity = 64/108 (59.26%), Postives = 78/108 (72.22%), Query Frame = 3
Query:  210 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 530
            SRSSRAGLQFPVGR+HRLL++              Y AA+LEYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K +++
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPV-YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQK 122          
BLAST of CV712479 vs. ExPASy Swiss-Prot
Match: H2AX_XENLA (Histone H2A.x OS=Xenopus laevis GN=h2afx PE=1 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 2.671e-25
Identity = 64/106 (60.38%), Postives = 77/106 (72.64%), Query Frame = 3
Query:  210 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 524
            +RSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I   L+ K S
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYAHRVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKS 121          
BLAST of CV712479 vs. ExPASy Swiss-Prot
Match: H2AX_HUMAN (Histone H2A.x OS=Homo sapiens GN=H2AFX PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 2.671e-25
Identity = 65/106 (61.32%), Postives = 77/106 (72.64%), Query Frame = 3
Query:  210 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 524
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K +
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGHYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 121          
BLAST of CV712479 vs. ExPASy Swiss-Prot
Match: H2A2B_MOUSE (Histone H2A type 2-B OS=Mus musculus GN=Hist2h2ab PE=1 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 2.671e-25
Identity = 64/107 (59.81%), Postives = 78/107 (72.90%), Query Frame = 3
Query:  210 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSK 527
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I   L+ K ++
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTE 122          
BLAST of CV712479 vs. ExPASy Swiss-Prot
Match: H2A2B_HUMAN (Histone H2A type 2-B OS=Homo sapiens GN=HIST2H2AB PE=1 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 2.671e-25
Identity = 64/107 (59.81%), Postives = 78/107 (72.90%), Query Frame = 3
Query:  210 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSK 527
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I   L+ K ++
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTE 122          
BLAST of CV712479 vs. ExPASy Swiss-Prot
Match: H2AJ_MACFA (Histone H2A.J OS=Macaca fascicularis GN=H2AFJ PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.489e-25
Identity = 65/107 (60.75%), Postives = 78/107 (72.90%), Query Frame = 3
Query:  210 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSSK 527
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ K ++
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122          
BLAST of CV712479 vs. ExPASy Swiss-Prot
Match: H2AJ_HUMAN (Histone H2A.J OS=Homo sapiens GN=H2AFJ PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.489e-25
Identity = 65/107 (60.75%), Postives = 78/107 (72.90%), Query Frame = 3
Query:  210 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSSK 527
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ K ++
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122          
The following BLAST results are available for this feature:
BLAST of CV712479 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
H2A_MYTGA2.671e-2559.26Histone H2A OS=Mytilus galloprovincialis PE=3 SV=3[more]
H2A_MYTED2.671e-2559.26Histone H2A OS=Mytilus edulis PE=3 SV=3[more]
H2A_MYTCH2.671e-2559.26Histone H2A OS=Mytilus chilensis PE=3 SV=3[more]
H2A_MYTCA2.671e-2559.26Histone H2A OS=Mytilus californianus PE=3 SV=3[more]
H2AX_XENLA2.671e-2560.38Histone H2A.x OS=Xenopus laevis GN=h2afx PE=1 SV=3[more]
H2AX_HUMAN2.671e-2561.32Histone H2A.x OS=Homo sapiens GN=H2AFX PE=1 SV=2[more]
H2A2B_MOUSE2.671e-2559.81Histone H2A type 2-B OS=Mus musculus GN=Hist2h2ab ... [more]
H2A2B_HUMAN2.671e-2559.81Histone H2A type 2-B OS=Homo sapiens GN=HIST2H2AB ... [more]
H2AJ_MACFA3.489e-2560.75Histone H2A.J OS=Macaca fascicularis GN=H2AFJ PE=2... [more]
H2AJ_HUMAN3.489e-2560.75Histone H2A.J OS=Homo sapiens GN=H2AFJ PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001H03_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712479 ID=CV712479; Name=CV712479; organism=Citrus sinensis; type=EST; length=607bp
CTCAAACGCTCGCTTAGCTTTATCTCTTTCTTTCCTCTCCGATAATTTTC
ATCTCAGAAAAAATTAAAAATAATTAAATAAATAATTAATTAATTTAAAA
GAAGCTGTAGAAATTAGGCGGGAAAATGTCGGGCAAAGGAGCCAAAGGAC
TGATAACAGGCAAAACCACCATTAACAACAACAAGGATAAGGACAAGAAG
AAACCCGTCTCCCGTTCTTCTCGTGCTGGTCTTCAGTTCCCAGTGGGAAG
GGTCCATCGTCTGCTAAAGGAAAGGGCTGCTGCTCACGGAAGGGTTGGTG
CAACAGCTGCTGTTTATACAGCAGCCATTTTGGAGTATCTAACTGCCGAA
GTGTTGGAGTTGGCAGGGAATGCTAGCAAGGATTTGAAGGTCAAACGTAT
TACTCCAAGGCATTTGCAGCTTGCTATCCGAGGAGATGAAGAACTTGACA
CTCTCATTAAAGGAACCATAGCCGGTGGAGGAGTTATTCCTCATATCCAC
AAGTCCCTCATCAATAAATCCTCCAAAGAGTAGTTCGTGACACCATCATC
CTCTCGGCTTTGTTTATGTGTGTACTTTTAGCTGTGCTGAAATATCTAAA
TGAGAAA
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