CV712475

Overview
NameCV712475
Unique NameCV712475
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712475 vs. ExPASy Swiss-Prot
Match: MLC1_DROME (Myosin light chain alkali OS=Drosophila melanogaster GN=Mlc1 PE=2 SV=4)

HSP 1 Score: 67.3958 bits (163), Expect = 9.953e-11
Identity = 43/144 (29.86%), Postives = 75/144 (52.08%), Query Frame = 3
Query:   81 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMA--RKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREA--DVDGDGQINYEEFVKVMMA 500
            ++   +  F +    G+G I   +LG  +R+L  NPT A L + +          I   EFL + +  +K K+    E+  E  +++DK++NG +  AEL+H +  LGE L DE+V+ +  +     D +G I Y +FV+ +M+
Sbjct:    8 EVENVEFVFEVMGSPGEG-IDAVDLGDALRALNLNPTLA-LIEKLGGTKKRNEKKIKLDEFLPIYSQVKKEKEQGCYEDFIECLKLYDKEENGTMLLAELQHALLALGESLDDEQVETLFADCMDPEDDEGFIPYSQFVQRLMS 149          
BLAST of CV712475 vs. ExPASy Swiss-Prot
Match: CML29_ORYSJ (Probable calcium-binding protein CML29 OS=Oryza sativa subsp. japonica GN=CML29 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.953e-11
Identity = 47/136 (34.56%), Postives = 72/136 (52.94%), Query Frame = 3
Query:   84 ISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLM-ARKMKDTDSEEELKEAFRVFDK--DQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEF 482
            IS   EAF  FD D DG +T  EL  ++ SLG +  E E++DM+   DAD +G +   E L++M A ++        L+ A    +     +G + A EL  +++ +G   + E+  E+I   D DGDG I+ EEF
Sbjct:   29 ISSLVEAFQAFDSDNDGLVTAPELRGLLASLGLDKPEHEVRDMLARADADRDGKLSVEELLDVMNAGQLGLGALGALLQSAVPALESAAGPDGVLGADELARLLSVMG-TASVEDCMEIIACMDGDGDGAISVEEF 163          
The following BLAST results are available for this feature:
BLAST of CV712475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 482
Match NameE-valueIdentityDescription
MLC1_DROME9.953e-1129.86Myosin light chain alkali OS=Drosophila melanogast... [more]
CML29_ORYSJ9.953e-1134.56Probable calcium-binding protein CML29 OS=Oryza sa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0001G24_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001G24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712475 ID=CV712475; Name=CV712475; organism=Citrus sinensis; type=EST; length=770bp
ATTTGATTTTGCGGGGAAAAAAAAAAACCTAGTTTTCGGTGTAAAAAAAG
AAGAAAATGGCGGATCAGCTCACCGACGATCAGATCTCCGAGTTTAAAGA
AGCCTTCAGCTTGTTCGACAAGGACGGCGACGGTTGCATTACCACCAAGG
AGCTTGGCACTGTTATGAGGTCACTGGGTCAGAACCCCACTGAGGCTGAG
CTCCAGGACATGATCAATGAAGTGGATGCTGATGGTAATGGAACTATTGA
TTTTCCTGAATTCCTAAACCTCATGGCCAGGAAGATGAAGGATACCGACT
CTGAGGAGGAGCTGAAAGAGGCCTTCCGGGTTTTCGACAAGGATCAGAAT
GGTTTCATCTCAGCTGCTGAACTGCGTCATGTGATGACAAACCTTGGGGA
GAAGCTTACTGATGAGGAAGTCGATGAGATGATAAGGGAAGCTGATGTCG
ATGGTGATGGCCAGATAAATTATGAGGAATTTGTCAAGGTTATGATGGCT
AAGTAAGTGACTCCACCCAACCAAAACTTCCTGGAAAAAGAAGAAATTGG
TTGATTAATATAATTGGTTCCCTAGTTTCCTTTTTTATAAATTTTAATTT
GATAACTCTGAGGTCAAGCTAAAGGAAGCATGTTGTCTCCTGCTTCAATT
TGTCTTGTGACTGGAGCAACTTTTCAGTTTTTTAATGTTTTAGTTTTTTT
CCGCTCTTCTGTGAACATTGTTTCTGTTAAATGAGTGACTCGTTGATCTG
CCTTATTTCTTATTTCGAGA
back to top