CV712472
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_GOSBA (30S ribosomal protein S3, chloroplastic OS=Gossypium barbadense GN=rps3 PE=3 SV=1) HSP 1 Score: 397.512 bits (1020), Expect = 5.307e-110 Identity = 191/218 (87.61%), Postives = 211/218 (96.79%), Query Frame = 1 Query: 79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 732 MGQKINPLGFRLGTTQSHHSLWFA+PK Y EGLQED+KIR+ IKNY++KN R+SSGVEGIARIEIQKR+DLIQVIIY+GFPKLL+E++PR++EELQMNVQKELNC+NRK+NIAITRI NPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQ+QIAGR+DGKEIAR EWIREGRVPLQTIGAKI+YCSY VRTIYGVLGIKIWIF+DE+ Sbjct: 1 MGQKINPLGFRLGTTQSHHSLWFAQPKKYSEGLQEDKKIRDCIKNYVQKNTRLSSGVEGIARIEIQKRLDLIQVIIYMGFPKLLIEDKPRKLEELQMNVQKELNCMNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIREGRVPLQTIGAKIEYCSYRVRTIYGVLGIKIWIFIDEE 218
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_VITVI (30S ribosomal protein S3, chloroplastic OS=Vitis vinifera GN=rps3 PE=3 SV=1) HSP 1 Score: 396.741 bits (1018), Expect = 9.052e-110 Identity = 196/218 (89.91%), Postives = 209/218 (95.87%), Query Frame = 1 Query: 79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 732 MGQKINPLGFRLGTTQ HHSLWFA+PKNY +GLQEDQKIR+ IKNY++KNIRISSGVEGIARIEIQKRIDLIQVIIY+GFPKLL+E +PRRIEELQMNVQKELN VNRK+NIAITRIT PYGHPNILAEFIAGQL+NRVSFRKA+KKAIELTEQADTKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSY VRTIYGVLGIKIWIFVDE+ Sbjct: 1 MGQKINPLGFRLGTTQGHHSLWFAQPKNYSKGLQEDQKIRDCIKNYVQKNIRISSGVEGIARIEIQKRIDLIQVIIYMGFPKLLVEGKPRRIEELQMNVQKELNYVNRKLNIAITRITKPYGHPNILAEFIAGQLRNRVSFRKAIKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYRVRTIYGVLGIKIWIFVDEE 218
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_LOBMA (30S ribosomal protein S3, chloroplastic OS=Lobularia maritima GN=rps3 PE=3 SV=1) HSP 1 Score: 396.356 bits (1017), Expect = 1.182e-109 Identity = 193/218 (88.53%), Postives = 211/218 (96.79%), Query Frame = 1 Query: 79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 732 MGQKINPLGFRLGTTQSH SLWFA+PK Y EGL+ED+KIR+ IKNY++KNIRISSG+EGIARIEIQKRIDLIQ+IIY+GFPKLL+E++PRR+EELQM VQKELNCVNRK+NIAITRI+NPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQA+TKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIFVDE+ Sbjct: 1 MGQKINPLGFRLGTTQSHRSLWFAQPKKYSEGLEEDKKIRDCIKNYVQKNIRISSGMEGIARIEIQKRIDLIQIIIYMGFPKLLIEDKPRRVEELQMTVQKELNCVNRKLNIAITRISNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQANTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIEAKIDYCSYTVRTIYGVLGIKIWIFVDEE 218
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_BARVE (30S ribosomal protein S3, chloroplastic OS=Barbarea verna GN=rps3 PE=3 SV=1) HSP 1 Score: 396.356 bits (1017), Expect = 1.182e-109 Identity = 193/217 (88.94%), Postives = 211/217 (97.24%), Query Frame = 1 Query: 79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 729 MGQKINPLGFRLGTTQSHHSLWFA+PK Y EGL+ED+KIR+ IKNY++KNIRISSG+EGIARIEIQKRIDLIQ+IIY+GFPKLL+E++PRR+EEL+MNVQKELNCVNRK+NIAITRI+NPYG PNILAEFIAGQLKNRVSFRKAMKKAIELTEQA+TKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIFVDE Sbjct: 1 MGQKINPLGFRLGTTQSHHSLWFAQPKKYSEGLEEDKKIRDCIKNYVQKNIRISSGMEGIARIEIQKRIDLIQIIIYMGFPKLLIEDKPRRVEELRMNVQKELNCVNRKLNIAITRISNPYGDPNILAEFIAGQLKNRVSFRKAMKKAIELTEQANTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIEAKIDYCSYTVRTIYGVLGIKIWIFVDE 217
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_LEPVR (30S ribosomal protein S3, chloroplastic OS=Lepidium virginicum GN=rps3 PE=3 SV=1) HSP 1 Score: 395.971 bits (1016), Expect = 1.544e-109 Identity = 193/218 (88.53%), Postives = 211/218 (96.79%), Query Frame = 1 Query: 79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 732 MGQKINPLGFRLGTTQSHHSLWFA+PK Y EGL+ED+KIR+ IK Y++KNIRISSG+EGIARIEIQKRIDLIQ+IIY+GFPKLL+E++PRR+EELQMNVQKELNCVNRK+NIAITRI+NPYG PNILAEFIAGQLKNRVSFRKAMKKAIELTEQA+TKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIFVDE+ Sbjct: 1 MGQKINPLGFRLGTTQSHHSLWFAQPKKYSEGLEEDKKIRDCIKKYVQKNIRISSGMEGIARIEIQKRIDLIQIIIYMGFPKLLIEDKPRRVEELQMNVQKELNCVNRKLNIAITRISNPYGDPNILAEFIAGQLKNRVSFRKAMKKAIELTEQANTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIEAKIDYCSYTVRTIYGVLGIKIWIFVDEE 218
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_CRUWA (30S ribosomal protein S3, chloroplastic OS=Crucihimalaya wallichii GN=rps3 PE=3 SV=1) HSP 1 Score: 393.275 bits (1009), Expect = 1.001e-108 Identity = 192/217 (88.48%), Postives = 210/217 (96.77%), Query Frame = 1 Query: 79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 729 MGQKINPLGFRLGTTQSHHSLWFA+PK Y EGL+ED+KIR+ IKNY++KNIRISSG+EGIARIEIQKRIDLIQ+IIY+GFPKLL+E++PRR+EELQMNVQKELNCVN+K+NIAITRI+NPYG PNILAEFIAGQLKNRVSFRKAMKKAIELTEQA+TKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCS TVRTIYGVLGIKIWIFVDE Sbjct: 1 MGQKINPLGFRLGTTQSHHSLWFAQPKKYSEGLEEDKKIRDCIKNYVQKNIRISSGMEGIARIEIQKRIDLIQIIIYMGFPKLLIEDKPRRVEELQMNVQKELNCVNKKLNIAITRISNPYGDPNILAEFIAGQLKNRVSFRKAMKKAIELTEQANTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIEAKIDYCSSTVRTIYGVLGIKIWIFVDE 217
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_EUCGG (30S ribosomal protein S3, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rps3 PE=3 SV=1) HSP 1 Score: 390.578 bits (1002), Expect = 6.487e-108 Identity = 192/214 (89.72%), Postives = 205/214 (95.79%), Query Frame = 1 Query: 79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 720 MGQKINPLGFRLGTTQ HHS+WFA+ KNY +GLQEDQKIRN IKNY++KN+RISSGVEGIARIEI+KRIDLIQVIIY+GFPKLLLE + RRIEELQMNVQKELNCVNRK+NIAITRITNPYGHPNILAEFIAGQLKNRVSFRKA+KKAIELTEQADTKGIQVQIAGRLDGKEIAR EW+REGRVPLQTI AKIDYCSY VRT+YGVLGIKIWIF Sbjct: 1 MGQKINPLGFRLGTTQGHHSIWFAQAKNYSDGLQEDQKIRNCIKNYLQKNMRISSGVEGIARIEIRKRIDLIQVIIYMGFPKLLLEGKTRRIEELQMNVQKELNCVNRKLNIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAIKKAIELTEQADTKGIQVQIAGRLDGKEIARVEWMREGRVPLQTIRAKIDYCSYGVRTVYGVLGIKIWIF 214
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_ATRBE (30S ribosomal protein S3, chloroplastic OS=Atropa belladonna GN=rps3 PE=3 SV=1) HSP 1 Score: 389.808 bits (1000), Expect = 1.107e-107 Identity = 189/218 (86.70%), Postives = 208/218 (95.41%), Query Frame = 1 Query: 79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 732 MGQKINPLGFRLGTTQ HHSLWF++PKNY EGLQEDQKIR+ IKNY++KN+R SSGVEGIARIEIQKRIDLIQVII++GFPKLL+E+RPR IEELQM +QKELNCVNRK+NIA+TRI PYG+PNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKIDYC+YTVRTIYGVLGIKIWIF+DE+ Sbjct: 1 MGQKINPLGFRLGTTQGHHSLWFSQPKNYSEGLQEDQKIRDCIKNYVQKNMRTSSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIESRPRGIEELQMTLQKELNCVNRKLNIAVTRIAKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCAYTVRTIYGVLGIKIWIFLDEE 218
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_DAUCA (30S ribosomal protein S3, chloroplastic OS=Daucus carota GN=rps3 PE=3 SV=1) HSP 1 Score: 389.423 bits (999), Expect = 1.445e-107 Identity = 190/216 (87.96%), Postives = 204/216 (94.44%), Query Frame = 1 Query: 79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVD 726 MGQKINPLGFRLGTTQSHHSLWF +PKNY EGLQEDQKIR+FIKNY++KN++ISSGVEGIARIEI KRIDLIQVIIY+GFPKLL+ENRP IE+LQMN+QKE NCVNRK+NI ITRI PYG PNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQI+GR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIF+D Sbjct: 1 MGQKINPLGFRLGTTQSHHSLWFTQPKNYSEGLQEDQKIRDFIKNYVQKNLKISSGVEGIARIEIHKRIDLIQVIIYMGFPKLLIENRPGGIEKLQMNLQKEFNCVNRKLNITITRIAKPYGSPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQISGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGVLGIKIWIFLD 216
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_SOLLC (30S ribosomal protein S3, chloroplastic OS=Solanum lycopersicum GN=rps3 PE=3 SV=1) HSP 1 Score: 388.652 bits (997), Expect = 2.465e-107 Identity = 187/218 (85.78%), Postives = 208/218 (95.41%), Query Frame = 1 Query: 79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 732 MGQKINPLGFRLGTTQSHHSLWF++PKNY EGLQED+KIR+ IKNY++KN+R SSG+EGIARIEIQKRIDLIQVII++GFPKLL+E+RPR IEELQM +QKE NCVNRK+NIA+TRI PYG+PNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYG+LGIKIWIF+DE+ Sbjct: 1 MGQKINPLGFRLGTTQSHHSLWFSQPKNYSEGLQEDKKIRDCIKNYVQKNMRTSSGIEGIARIEIQKRIDLIQVIIFMGFPKLLIESRPRGIEELQMTLQKEFNCVNRKLNIAVTRIAKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGILGIKIWIFLDEE 218 The following BLAST results are available for this feature:
BLAST of CV712472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CV712472 ID=CV712472; Name=CV712472; organism=Citrus sinensis; type=EST; length=893bpback to top |