CV712472

Overview
NameCV712472
Unique NameCV712472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length893
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_ORYSJ (30S ribosomal protein S3, chloroplastic OS=Oryza sativa subsp. japonica GN=rps3 PE=3 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 1.410e-78
Identity = 153/241 (63.49%), Postives = 181/241 (75.10%), Query Frame = 1
Query:   79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIR-----------------------ISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 732
            MGQKINPLGFRLGTTQ+HHS WFA+PKNY EGLQED+KIRN IKNYI+KN +                         S  E I  IEIQK ID I VII+IGFP LL   +   IEEL+ ++QKE+N VN+++NI I ++  PY  PNILAE+IA QLKNRVSFRKAMKKAIELT++ D KG++V+IAGRL GKEIARAE I++GR+PLQTI AKIDYC Y +RTIYGVLG+KIWIFVDE+
Sbjct:    1 MGQKINPLGFRLGTTQNHHSFWFAQPKNYSEGLQEDKKIRNCIKNYIQKNRKKGSNRKIEADSSFEVITHNKKMDSGSSSEVITHIEIQKEIDTIHVIIHIGFPNLL--KKKGAIEELEKDLQKEVNSVNQRLNIGIEKVKEPYRQPNILAEYIAFQLKNRVSFRKAMKKAIELTKKTDIKGVKVKIAGRLAGKEIARAECIKKGRLPLQTIRAKIDYCCYPIRTIYGVLGVKIWIFVDEE 239          
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_ORYSI (30S ribosomal protein S3, chloroplastic OS=Oryza sativa subsp. indica GN=rps3 PE=3 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 1.410e-78
Identity = 153/241 (63.49%), Postives = 181/241 (75.10%), Query Frame = 1
Query:   79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIR-----------------------ISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 732
            MGQKINPLGFRLGTTQ+HHS WFA+PKNY EGLQED+KIRN IKNYI+KN +                         S  E I  IEIQK ID I VII+IGFP LL   +   IEEL+ ++QKE+N VN+++NI I ++  PY  PNILAE+IA QLKNRVSFRKAMKKAIELT++ D KG++V+IAGRL GKEIARAE I++GR+PLQTI AKIDYC Y +RTIYGVLG+KIWIFVDE+
Sbjct:    1 MGQKINPLGFRLGTTQNHHSFWFAQPKNYSEGLQEDKKIRNCIKNYIQKNRKKGSNRKIEADSSFEVITHNKKMDSGSSSEVITHIEIQKEIDTIHVIIHIGFPNLL--KKKGAIEELEKDLQKEVNSVNQRLNIGIEKVKEPYRQPNILAEYIAFQLKNRVSFRKAMKKAIELTKKTDIKGVKVKIAGRLAGKEIARAECIKKGRLPLQTIRAKIDYCCYPIRTIYGVLGVKIWIFVDEE 239          
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_ORYSA (30S ribosomal protein S3, chloroplastic OS=Oryza sativa GN=rps3 PE=3 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 1.410e-78
Identity = 153/241 (63.49%), Postives = 181/241 (75.10%), Query Frame = 1
Query:   79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIR-----------------------ISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 732
            MGQKINPLGFRLGTTQ+HHS WFA+PKNY EGLQED+KIRN IKNYI+KN +                         S  E I  IEIQK ID I VII+IGFP LL   +   IEEL+ ++QKE+N VN+++NI I ++  PY  PNILAE+IA QLKNRVSFRKAMKKAIELT++ D KG++V+IAGRL GKEIARAE I++GR+PLQTI AKIDYC Y +RTIYGVLG+KIWIFVDE+
Sbjct:    1 MGQKINPLGFRLGTTQNHHSFWFAQPKNYSEGLQEDKKIRNCIKNYIQKNRKKGSNRKIEADSSFEVITHNKKMDSGSSSEVITHIEIQKEIDTIHVIIHIGFPNLL--KKKGAIEELEKDLQKEVNSVNQRLNIGIEKVKEPYRQPNILAEYIAFQLKNRVSFRKAMKKAIELTKKTDIKGVKVKIAGRLAGKEIARAECIKKGRLPLQTIRAKIDYCCYPIRTIYGVLGVKIWIFVDEE 239          
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_ORYNI (30S ribosomal protein S3, chloroplastic OS=Oryza nivara GN=rps3 PE=3 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 1.410e-78
Identity = 153/241 (63.49%), Postives = 181/241 (75.10%), Query Frame = 1
Query:   79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIR-----------------------ISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 732
            MGQKINPLGFRLGTTQ+HHS WFA+PKNY EGLQED+KIRN IKNYI+KN +                         S  E I  IEIQK ID I VII+IGFP LL   +   IEEL+ ++QKE+N VN+++NI I ++  PY  PNILAE+IA QLKNRVSFRKAMKKAIELT++ D KG++V+IAGRL GKEIARAE I++GR+PLQTI AKIDYC Y +RTIYGVLG+KIWIFVDE+
Sbjct:    1 MGQKINPLGFRLGTTQNHHSFWFAQPKNYSEGLQEDKKIRNCIKNYIQKNRKKGSNRKIEADSSFEVITHNKKMDSGSSSEVITHIEIQKEIDTIHVIIHIGFPNLL--KKKGAIEELEKDLQKEVNSVNQRLNIGIEKVKEPYRQPNILAEYIAFQLKNRVSFRKAMKKAIELTKKTDIKGVKVKIAGRLAGKEIARAECIKKGRLPLQTIRAKIDYCCYPIRTIYGVLGVKIWIFVDEE 239          
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_CYCTA (30S ribosomal protein S3, chloroplastic OS=Cycas taitungensis GN=rps3 PE=3 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 2.404e-78
Identity = 146/218 (66.97%), Postives = 177/218 (81.19%), Query Frame = 1
Query:   79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 732
            MGQK+NPLGFRLG TQ+H S WFA+ KNY E L+ED+KI N I NYI++++R SS   GIAR+EI+++IDLIQV I+IGFP LL+ENR R  E+L+ +V+  LN V+ K+NIAI ++  PYG PNILAEFIA QL++RVS  + +K+AIEL EQAD KGIQ+QIAGRLDG EIAR EW REGRVPLQTI AKID+C Y  +TIYGVLGIKIWIF DEK
Sbjct:    1 MGQKMNPLGFRLGITQNHRSHWFAQQKNYSEDLREDEKISNCIVNYIRRHMRSSSNHGGIARVEIRRKIDLIQVEIHIGFPNLLIENRGRGSEQLRTDVRNMLNPVDGKLNIAIVKVAKPYGEPNILAEFIALQLEDRVSLGRTVKRAIELAEQADIKGIQIQIAGRLDGNEIARVEWAREGRVPLQTIRAKIDHCYYPAQTIYGVLGIKIWIFGDEK 218          
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_GINBI (30S ribosomal protein S3, chloroplastic OS=Ginkgo biloba GN=rps3 PE=3 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 4.101e-78
Identity = 142/218 (65.14%), Postives = 179/218 (82.11%), Query Frame = 1
Query:   79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 732
            MGQ+INPLGFRLG TQ+H S WFA+ K Y E LQED++IRN I+NY++++++  S   GIAR+EI+++IDLIQV I+IGFP LL+E+R R IE+L+ +V+  LN  NRK+NI+I ++  PYG PNILAE+IA QL++RVSFRK +KKAIEL EQAD +GIQ+QIAGRLDG EIAR EW R GRVPLQTI A+ID+C Y  +TIYGVLGIKIWIF DE+
Sbjct:    1 MGQRINPLGFRLGVTQNHRSHWFAQKKYYSEDLQEDEEIRNCIENYVRRHMKNYSNYGGIARVEIRRKIDLIQVEIHIGFPNLLIEDRGRGIEQLRTDVRNMLNSANRKLNISIAKVAKPYGVPNILAEYIALQLEDRVSFRKTVKKAIELAEQADIRGIQIQIAGRLDGNEIARVEWARGGRVPLQTIRARIDHCYYPAKTIYGVLGIKIWIFGDEE 218          
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_WHEAT (30S ribosomal protein S3, chloroplastic OS=Triticum aestivum GN=rps3 PE=3 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 5.356e-78
Identity = 152/241 (63.07%), Postives = 181/241 (75.10%), Query Frame = 1
Query:   79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIR-----------------------ISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 732
            MGQKINPLGFRLGTTQ HHS WFA+PKNY EGLQED+KIR+ IKNYI+KN +                         S  E I  IEIQK ID I VII+IGFP LL   +   IEEL+ ++QKE+N VN++ NI+I ++  PY  PNILAE+IA QLKNRVSFRKAMKKAIELT++AD +G++V+IAGRL GKEIARAE I++GR+PLQTI AKIDYC Y +RTIYGVLG+KIWIFVDE+
Sbjct:    1 MGQKINPLGFRLGTTQKHHSFWFAQPKNYSEGLQEDKKIRDCIKNYIQKNRKKGSNRKIESDSSSEVITHNRKMDSGSSSEVITHIEIQKEIDTIHVIIHIGFPNLL--KKKGAIEELEKDLQKEINSVNQRFNISIEKVKEPYRQPNILAEYIAFQLKNRVSFRKAMKKAIELTKKADIRGVKVKIAGRLGGKEIARAESIKKGRLPLQTIRAKIDYCCYPIRTIYGVLGVKIWIFVDEE 239          
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_HORVU (30S ribosomal protein S3, chloroplastic OS=Hordeum vulgare GN=rps3 PE=3 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 6.996e-78
Identity = 152/241 (63.07%), Postives = 180/241 (74.69%), Query Frame = 1
Query:   79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIR-----------------------ISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 732
            MGQKINPLGFRLGTTQ HHS WFA+PKNY EGLQED+KIR+ IKNYI+KN +                         S  E I  IEIQK ID I VII+IGFP LL   +   IEEL+ ++QKE+N VN++ NI+I ++  PY  PNILAE+IA QLKNRVSFRKAMKKAIELT++AD +G++V+IAGRL GKEIARAE I+ GR+PLQTI AKIDYC Y +RTIYGVLG+KIWIFVDE+
Sbjct:    1 MGQKINPLGFRLGTTQKHHSFWFAQPKNYSEGLQEDKKIRDCIKNYIQKNRKKGSNRKIESDSSSEVITHNRKMDSGSSSEVITHIEIQKEIDTIHVIIHIGFPNLL--KKKGAIEELEKDLQKEINSVNQRFNISIEKVKEPYRQPNILAEYIAFQLKNRVSFRKAMKKAIELTKKADIRGVKVKIAGRLGGKEIARAESIKRGRLPLQTIRAKIDYCCYPIRTIYGVLGVKIWIFVDEE 239          
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_ANTFO (30S ribosomal protein S3, chloroplastic OS=Anthoceros formosae GN=rps3 PE=2 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 5.014e-76
Identity = 140/218 (64.22%), Postives = 174/218 (79.82%), Query Frame = 1
Query:   79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 732
            MGQKINPLGFRLG TQ+H S WFAKP NY + L+ED+K+RN I NY++K+I+ SS   GIARIEI+++ DLIQ+ IY GFP LL+E+R R IEEL+ +VQ  LN  NRK+ +A+T +  PY  PNILAE+IA QL+NRV+FR+ MKKAIELT +   KGI++QIAGRL+G EIAR EW REGRVPLQTI A+I+YC Y  +TIYGVLGIK+WIF  E+
Sbjct:    1 MGQKINPLGFRLGVTQNHCSHWFAKPNNYYKLLEEDEKMRNCIYNYVRKHIKSSSNYGGIARIEIERKTDLIQIEIYTGFPALLVESRGRGIEELKADVQTVLNLGNRKLRMALTEVEEPYTEPNILAEYIALQLENRVAFRRTMKKAIELTRKTSVKGIKIQIAGRLNGAEIARVEWAREGRVPLQTIRAQINYCYYPAQTIYGVLGIKVWIFQTEE 218          
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_HUPLU (30S ribosomal protein S3, chloroplastic OS=Huperzia lucidula GN=rps3 PE=3 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 5.736e-72
Identity = 131/219 (59.82%), Postives = 174/219 (79.45%), Query Frame = 1
Query:   79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKEL-NCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 732
            MGQKINPLGFRLG T++H+S WFAKP NY E LQED+K+RN I NY+ ++++ SS   G+AR+EIQ++ DLI V I+ GFP LL+E+  + IE+++ +VQ+ L +   R++++  T I  PYG PNILAE+IA QL+NRV+FR+ ++KAIEL ++ D KGI++QIAGRL+G EIAR EW REGRVPLQT+ A+IDYC Y  +TIYGVLGIKIWIF DE+
Sbjct:    1 MGQKINPLGFRLGITKNHNSHWFAKPNNYSEFLQEDRKVRNCIDNYVHRHVKNSSNYGGVARVEIQRKTDLILVEIHTGFPALLVESHGQGIEQIRKDVQQNLLDSKIRRVHVTSTEIAKPYGEPNILAEYIAIQLENRVAFRRTIRKAIELAKETDIKGIKIQIAGRLNGTEIARVEWAREGRVPLQTLRAQIDYCYYPAQTIYGVLGIKIWIFRDEE 219          
The following BLAST results are available for this feature:
BLAST of CV712472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR3_ORYSJ1.410e-7863.4930S ribosomal protein S3, chloroplastic OS=Oryza s... [more]
RR3_ORYSI1.410e-7863.4930S ribosomal protein S3, chloroplastic OS=Oryza s... [more]
RR3_ORYSA1.410e-7863.4930S ribosomal protein S3, chloroplastic OS=Oryza s... [more]
RR3_ORYNI1.410e-7863.4930S ribosomal protein S3, chloroplastic OS=Oryza n... [more]
RR3_CYCTA2.404e-7866.9730S ribosomal protein S3, chloroplastic OS=Cycas t... [more]
RR3_GINBI4.101e-7865.1430S ribosomal protein S3, chloroplastic OS=Ginkgo ... [more]
RR3_WHEAT5.356e-7863.0730S ribosomal protein S3, chloroplastic OS=Triticu... [more]
RR3_HORVU6.996e-7863.0730S ribosomal protein S3, chloroplastic OS=Hordeum... [more]
RR3_ANTFO5.014e-7664.2230S ribosomal protein S3, chloroplastic OS=Anthoce... [more]
RR3_HUPLU5.736e-7259.8230S ribosomal protein S3, chloroplastic OS=Huperzi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001G23_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001G23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712472 ID=CV712472; Name=CV712472; organism=Citrus sinensis; type=EST; length=893bp
CAAAAACACTAGATTAATAAATAAAAAAAAGAAAAAAAAAACTATGACAT
GTCATGATACATATAGGAATGGGGGATTATGGGACAAAAAATAAATCCAC
TAGGTTTCCGGCTTGGTACAACACAAAGTCATCATTCTCTTTGGTTTGCA
AAACCAAAAAACTATTGCGAGGGTCTACAAGAAGATCAAAAAATACGAAA
CTTTATTAAGAATTATATAAAAAAAAATATCAGAATATCTTCCGGTGTTG
AGGGAATTGCACGGATAGAGATTCAAAAAAGAATTGATCTAATTCAAGTT
ATAATCTATATAGGGTTCCCAAAATTATTACTAGAAAATAGACCGCGAAG
AATTGAAGAATTACAGATGAATGTACAAAAAGAACTTAATTGTGTGAATC
GAAAAATAAACATTGCTATTACACGAATTACAAATCCTTATGGACACCCC
AATATTCTTGCCGAATTTATAGCCGGACAATTAAAAAATAGAGTTTCTTT
TCGAAAAGCAATGAAAAAAGCTATTGAATTAACGGAACAGGCCGATACAA
AAGGAATTCAAGTACAAATTGCAGGGCGTCTTGACGGAAAAGAAATTGCG
CGCGCCGAATGGATCAGAGAAGGTAGAGTTCCTCTACAAACCATTGGAGC
TAAAATTGATTATTGTTCCTATACGGTTCGAACTATCTACGGGGTATTGG
GAATCAAAATTTGGATATTTGTAGACGAAAAAAAATAAGAGTTTACGGGT
CTTTAGAGCCCCCCCATTAATGGAAATAAACCAAACAAAGAACGAGCTCT
TTTTATCTTCAATCAAAACAAAAATGAGAAATTCCGCAATTCTATAGGGT
TGAATAAAAATTCGATTGATTTTTTTTTTTTTATATAATTGCT
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