CV712472
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_ORYSJ (30S ribosomal protein S3, chloroplastic OS=Oryza sativa subsp. japonica GN=rps3 PE=3 SV=1) HSP 1 Score: 293.123 bits (749), Expect = 1.410e-78 Identity = 153/241 (63.49%), Postives = 181/241 (75.10%), Query Frame = 1 Query: 79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIR-----------------------ISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 732 MGQKINPLGFRLGTTQ+HHS WFA+PKNY EGLQED+KIRN IKNYI+KN + S E I IEIQK ID I VII+IGFP LL + IEEL+ ++QKE+N VN+++NI I ++ PY PNILAE+IA QLKNRVSFRKAMKKAIELT++ D KG++V+IAGRL GKEIARAE I++GR+PLQTI AKIDYC Y +RTIYGVLG+KIWIFVDE+ Sbjct: 1 MGQKINPLGFRLGTTQNHHSFWFAQPKNYSEGLQEDKKIRNCIKNYIQKNRKKGSNRKIEADSSFEVITHNKKMDSGSSSEVITHIEIQKEIDTIHVIIHIGFPNLL--KKKGAIEELEKDLQKEVNSVNQRLNIGIEKVKEPYRQPNILAEYIAFQLKNRVSFRKAMKKAIELTKKTDIKGVKVKIAGRLAGKEIARAECIKKGRLPLQTIRAKIDYCCYPIRTIYGVLGVKIWIFVDEE 239
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_ORYSI (30S ribosomal protein S3, chloroplastic OS=Oryza sativa subsp. indica GN=rps3 PE=3 SV=1) HSP 1 Score: 293.123 bits (749), Expect = 1.410e-78 Identity = 153/241 (63.49%), Postives = 181/241 (75.10%), Query Frame = 1 Query: 79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIR-----------------------ISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 732 MGQKINPLGFRLGTTQ+HHS WFA+PKNY EGLQED+KIRN IKNYI+KN + S E I IEIQK ID I VII+IGFP LL + IEEL+ ++QKE+N VN+++NI I ++ PY PNILAE+IA QLKNRVSFRKAMKKAIELT++ D KG++V+IAGRL GKEIARAE I++GR+PLQTI AKIDYC Y +RTIYGVLG+KIWIFVDE+ Sbjct: 1 MGQKINPLGFRLGTTQNHHSFWFAQPKNYSEGLQEDKKIRNCIKNYIQKNRKKGSNRKIEADSSFEVITHNKKMDSGSSSEVITHIEIQKEIDTIHVIIHIGFPNLL--KKKGAIEELEKDLQKEVNSVNQRLNIGIEKVKEPYRQPNILAEYIAFQLKNRVSFRKAMKKAIELTKKTDIKGVKVKIAGRLAGKEIARAECIKKGRLPLQTIRAKIDYCCYPIRTIYGVLGVKIWIFVDEE 239
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_ORYSA (30S ribosomal protein S3, chloroplastic OS=Oryza sativa GN=rps3 PE=3 SV=1) HSP 1 Score: 293.123 bits (749), Expect = 1.410e-78 Identity = 153/241 (63.49%), Postives = 181/241 (75.10%), Query Frame = 1 Query: 79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIR-----------------------ISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 732 MGQKINPLGFRLGTTQ+HHS WFA+PKNY EGLQED+KIRN IKNYI+KN + S E I IEIQK ID I VII+IGFP LL + IEEL+ ++QKE+N VN+++NI I ++ PY PNILAE+IA QLKNRVSFRKAMKKAIELT++ D KG++V+IAGRL GKEIARAE I++GR+PLQTI AKIDYC Y +RTIYGVLG+KIWIFVDE+ Sbjct: 1 MGQKINPLGFRLGTTQNHHSFWFAQPKNYSEGLQEDKKIRNCIKNYIQKNRKKGSNRKIEADSSFEVITHNKKMDSGSSSEVITHIEIQKEIDTIHVIIHIGFPNLL--KKKGAIEELEKDLQKEVNSVNQRLNIGIEKVKEPYRQPNILAEYIAFQLKNRVSFRKAMKKAIELTKKTDIKGVKVKIAGRLAGKEIARAECIKKGRLPLQTIRAKIDYCCYPIRTIYGVLGVKIWIFVDEE 239
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_ORYNI (30S ribosomal protein S3, chloroplastic OS=Oryza nivara GN=rps3 PE=3 SV=1) HSP 1 Score: 293.123 bits (749), Expect = 1.410e-78 Identity = 153/241 (63.49%), Postives = 181/241 (75.10%), Query Frame = 1 Query: 79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIR-----------------------ISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 732 MGQKINPLGFRLGTTQ+HHS WFA+PKNY EGLQED+KIRN IKNYI+KN + S E I IEIQK ID I VII+IGFP LL + IEEL+ ++QKE+N VN+++NI I ++ PY PNILAE+IA QLKNRVSFRKAMKKAIELT++ D KG++V+IAGRL GKEIARAE I++GR+PLQTI AKIDYC Y +RTIYGVLG+KIWIFVDE+ Sbjct: 1 MGQKINPLGFRLGTTQNHHSFWFAQPKNYSEGLQEDKKIRNCIKNYIQKNRKKGSNRKIEADSSFEVITHNKKMDSGSSSEVITHIEIQKEIDTIHVIIHIGFPNLL--KKKGAIEELEKDLQKEVNSVNQRLNIGIEKVKEPYRQPNILAEYIAFQLKNRVSFRKAMKKAIELTKKTDIKGVKVKIAGRLAGKEIARAECIKKGRLPLQTIRAKIDYCCYPIRTIYGVLGVKIWIFVDEE 239
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_CYCTA (30S ribosomal protein S3, chloroplastic OS=Cycas taitungensis GN=rps3 PE=3 SV=1) HSP 1 Score: 292.352 bits (747), Expect = 2.404e-78 Identity = 146/218 (66.97%), Postives = 177/218 (81.19%), Query Frame = 1 Query: 79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 732 MGQK+NPLGFRLG TQ+H S WFA+ KNY E L+ED+KI N I NYI++++R SS GIAR+EI+++IDLIQV I+IGFP LL+ENR R E+L+ +V+ LN V+ K+NIAI ++ PYG PNILAEFIA QL++RVS + +K+AIEL EQAD KGIQ+QIAGRLDG EIAR EW REGRVPLQTI AKID+C Y +TIYGVLGIKIWIF DEK Sbjct: 1 MGQKMNPLGFRLGITQNHRSHWFAQQKNYSEDLREDEKISNCIVNYIRRHMRSSSNHGGIARVEIRRKIDLIQVEIHIGFPNLLIENRGRGSEQLRTDVRNMLNPVDGKLNIAIVKVAKPYGEPNILAEFIALQLEDRVSLGRTVKRAIELAEQADIKGIQIQIAGRLDGNEIARVEWAREGRVPLQTIRAKIDHCYYPAQTIYGVLGIKIWIFGDEK 218
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_GINBI (30S ribosomal protein S3, chloroplastic OS=Ginkgo biloba GN=rps3 PE=3 SV=1) HSP 1 Score: 291.582 bits (745), Expect = 4.101e-78 Identity = 142/218 (65.14%), Postives = 179/218 (82.11%), Query Frame = 1 Query: 79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 732 MGQ+INPLGFRLG TQ+H S WFA+ K Y E LQED++IRN I+NY++++++ S GIAR+EI+++IDLIQV I+IGFP LL+E+R R IE+L+ +V+ LN NRK+NI+I ++ PYG PNILAE+IA QL++RVSFRK +KKAIEL EQAD +GIQ+QIAGRLDG EIAR EW R GRVPLQTI A+ID+C Y +TIYGVLGIKIWIF DE+ Sbjct: 1 MGQRINPLGFRLGVTQNHRSHWFAQKKYYSEDLQEDEEIRNCIENYVRRHMKNYSNYGGIARVEIRRKIDLIQVEIHIGFPNLLIEDRGRGIEQLRTDVRNMLNSANRKLNISIAKVAKPYGVPNILAEYIALQLEDRVSFRKTVKKAIELAEQADIRGIQIQIAGRLDGNEIARVEWARGGRVPLQTIRARIDHCYYPAKTIYGVLGIKIWIFGDEE 218
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_WHEAT (30S ribosomal protein S3, chloroplastic OS=Triticum aestivum GN=rps3 PE=3 SV=1) HSP 1 Score: 291.197 bits (744), Expect = 5.356e-78 Identity = 152/241 (63.07%), Postives = 181/241 (75.10%), Query Frame = 1 Query: 79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIR-----------------------ISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 732 MGQKINPLGFRLGTTQ HHS WFA+PKNY EGLQED+KIR+ IKNYI+KN + S E I IEIQK ID I VII+IGFP LL + IEEL+ ++QKE+N VN++ NI+I ++ PY PNILAE+IA QLKNRVSFRKAMKKAIELT++AD +G++V+IAGRL GKEIARAE I++GR+PLQTI AKIDYC Y +RTIYGVLG+KIWIFVDE+ Sbjct: 1 MGQKINPLGFRLGTTQKHHSFWFAQPKNYSEGLQEDKKIRDCIKNYIQKNRKKGSNRKIESDSSSEVITHNRKMDSGSSSEVITHIEIQKEIDTIHVIIHIGFPNLL--KKKGAIEELEKDLQKEINSVNQRFNISIEKVKEPYRQPNILAEYIAFQLKNRVSFRKAMKKAIELTKKADIRGVKVKIAGRLGGKEIARAESIKKGRLPLQTIRAKIDYCCYPIRTIYGVLGVKIWIFVDEE 239
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_HORVU (30S ribosomal protein S3, chloroplastic OS=Hordeum vulgare GN=rps3 PE=3 SV=1) HSP 1 Score: 290.812 bits (743), Expect = 6.996e-78 Identity = 152/241 (63.07%), Postives = 180/241 (74.69%), Query Frame = 1 Query: 79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIR-----------------------ISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 732 MGQKINPLGFRLGTTQ HHS WFA+PKNY EGLQED+KIR+ IKNYI+KN + S E I IEIQK ID I VII+IGFP LL + IEEL+ ++QKE+N VN++ NI+I ++ PY PNILAE+IA QLKNRVSFRKAMKKAIELT++AD +G++V+IAGRL GKEIARAE I+ GR+PLQTI AKIDYC Y +RTIYGVLG+KIWIFVDE+ Sbjct: 1 MGQKINPLGFRLGTTQKHHSFWFAQPKNYSEGLQEDKKIRDCIKNYIQKNRKKGSNRKIESDSSSEVITHNRKMDSGSSSEVITHIEIQKEIDTIHVIIHIGFPNLL--KKKGAIEELEKDLQKEINSVNQRFNISIEKVKEPYRQPNILAEYIAFQLKNRVSFRKAMKKAIELTKKADIRGVKVKIAGRLGGKEIARAESIKRGRLPLQTIRAKIDYCCYPIRTIYGVLGVKIWIFVDEE 239
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_ANTFO (30S ribosomal protein S3, chloroplastic OS=Anthoceros formosae GN=rps3 PE=2 SV=1) HSP 1 Score: 284.648 bits (727), Expect = 5.014e-76 Identity = 140/218 (64.22%), Postives = 174/218 (79.82%), Query Frame = 1 Query: 79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 732 MGQKINPLGFRLG TQ+H S WFAKP NY + L+ED+K+RN I NY++K+I+ SS GIARIEI+++ DLIQ+ IY GFP LL+E+R R IEEL+ +VQ LN NRK+ +A+T + PY PNILAE+IA QL+NRV+FR+ MKKAIELT + KGI++QIAGRL+G EIAR EW REGRVPLQTI A+I+YC Y +TIYGVLGIK+WIF E+ Sbjct: 1 MGQKINPLGFRLGVTQNHCSHWFAKPNNYYKLLEEDEKMRNCIYNYVRKHIKSSSNYGGIARIEIERKTDLIQIEIYTGFPALLVESRGRGIEELKADVQTVLNLGNRKLRMALTEVEEPYTEPNILAEYIALQLENRVAFRRTMKKAIELTRKTSVKGIKIQIAGRLNGAEIARVEWAREGRVPLQTIRAQINYCYYPAQTIYGVLGIKVWIFQTEE 218
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_HUPLU (30S ribosomal protein S3, chloroplastic OS=Huperzia lucidula GN=rps3 PE=3 SV=1) HSP 1 Score: 271.166 bits (692), Expect = 5.736e-72 Identity = 131/219 (59.82%), Postives = 174/219 (79.45%), Query Frame = 1 Query: 79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKEL-NCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 732 MGQKINPLGFRLG T++H+S WFAKP NY E LQED+K+RN I NY+ ++++ SS G+AR+EIQ++ DLI V I+ GFP LL+E+ + IE+++ +VQ+ L + R++++ T I PYG PNILAE+IA QL+NRV+FR+ ++KAIEL ++ D KGI++QIAGRL+G EIAR EW REGRVPLQT+ A+IDYC Y +TIYGVLGIKIWIF DE+ Sbjct: 1 MGQKINPLGFRLGITKNHNSHWFAKPNNYSEFLQEDRKVRNCIDNYVHRHVKNSSNYGGVARVEIQRKTDLILVEIHTGFPALLVESHGQGIEQIRKDVQQNLLDSKIRRVHVTSTEIAKPYGEPNILAEYIAIQLENRVAFRRTIRKAIELAKETDIKGIKIQIAGRLNGTEIARVEWAREGRVPLQTLRAQIDYCYYPAQTIYGVLGIKIWIFRDEE 219 The following BLAST results are available for this feature:
BLAST of CV712472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CV712472 ID=CV712472; Name=CV712472; organism=Citrus sinensis; type=EST; length=893bpback to top |