CV712464

Overview
NameCV712464
Unique NameCV712464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length853
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712464 vs. ExPASy Swiss-Prot
Match: ETR1_SCHPO (Probable trans-2-enoyl-CoA reductase, mitochondrial OS=Schizosaccharomyces pombe GN=etr1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.143e-16
Identity = 60/167 (35.93%), Postives = 87/167 (52.10%), Query Frame = -2
Query:  250 SRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGFLANLPE------PALGFNCVGGNSASMVLKFLSQGGTMVTYGGMSKKPITVSTSSFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLK-YDMELVPFN---NFQTALSKALGLHGSQPKQVIKF 720
            +R   ++ KE+LK LGA  V T+ +L  +  K     +PE        LG +CV G  A+ + K++S+G TM T+GGMS++P+ V  S  IFK+L   GFW+ KW  SE   E   +I  +    R G LK  + ELV      + +T L   L       K++IKF
Sbjct:  207 NRPDIEKLKEQLKSLGATIVITDEELMDR--KTMKQKVPEWIQGGEVKLGIDCVSGRVAAEMAKYMSKGATMATFGGMSRQPLPVPVSLLIFKNLKFHGFWVTKW-KSEHPEEFLKIIHKVEDFYRNGTLKTVNTELVSLKEDADEKTFLDTFLNAIEGHGKKIIKF 370          
BLAST of CV712464 vs. ExPASy Swiss-Prot
Match: ETR2_CANTR (Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 2, mitochondrial OS=Candida tropicalis GN=ETR2 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.021e-14
Identity = 47/128 (36.72%), Postives = 72/128 (56.25%), Query Frame = -2
Query:  349 RAGSDEAKEKLKGLGADEVFTESQLEVKN----VKGFLANLP-EPALGFNCVGGNSASMVLKFLSQGGTMVTYGGMSKKPITVSTSSFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKL 717
            R   DE    LK LGA +V TE Q   K     +K ++     E  L  NCVGG S++ + + L+  G M+TYGGMS +P+T+ TS +IFK+ +  GFW+ + L + K  +  + ++ ++    EGKL
Sbjct:  224 RPNLDEVVASLKELGATQVITEDQNNSKEFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKELK-TSTLNQIIAWYEEGKL 350          
BLAST of CV712464 vs. ExPASy Swiss-Prot
Match: ETR1_CANTR (Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1, mitochondrial OS=Candida tropicalis GN=ETR1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.274e-14
Identity = 46/128 (35.94%), Postives = 72/128 (56.25%), Query Frame = -2
Query:  349 RAGSDEAKEKLKGLGADEVFTESQLEVKN----VKGFLANLP-EPALGFNCVGGNSASMVLKFLSQGGTMVTYGGMSKKPITVSTSSFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKL 717
            R   DE    LK LGA +V TE Q   +     +K ++     E  L  NCVGG S++ + + L+  G M+TYGGMS +P+T+ TS +IFK+ +  GFW+ + L + K  +  + ++ ++    EGKL
Sbjct:  224 RPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKELK-TSTLNQIIAWYEEGKL 350          
BLAST of CV712464 vs. ExPASy Swiss-Prot
Match: MECR2_CAEEL (Probable trans-2-enoyl-CoA reductase 2, mitochondrial OS=Caenorhabditis elegans GN=Y48A6B.9 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.969e-14
Identity = 51/146 (34.93%), Postives = 78/146 (53.42%), Query Frame = -2
Query:  289 SRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGFLANLPEPALGFNCVGGNSASMVLKFLSQGGTMVTYGGMSKKPITVSTSSFIFKDLSLKGFWLQKWLSSEKATECRNM-IDYLLCLAREGKL-KYDMELVPFNNFQTALSKAL 720
            +R   +  K  L  +GAD VFTE + +  + +   +    P L  N VGG SA  +   L +GGT VTYGGMSKK    +TS+ +F D+ ++G  +  W   E+  +  N+ +D +  LA  GK+    ME V   + +TA+ K+L
Sbjct:  181 NRQNIEALKTDLWRIGADHVFTEEEFKGTSRQFLKSINVRPKLALNGVGGKSALQISSVLERGGTCVTYGGMSKKAHEFTTSALVFNDICVRGVAVGMWARQEEHLDEWNLCVDEVQKLAVAGKITAIPMEKVVLADHKTAIQKSL 326          
BLAST of CV712464 vs. ExPASy Swiss-Prot
Match: ETR1_CANGA (Probable trans-2-enoyl-CoA reductase, mitochondrial OS=Candida glabrata GN=ETR1 PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.013e-11
Identity = 45/129 (34.88%), Postives = 69/129 (53.49%), Query Frame = -2
Query:  349 RAGSDEAKEKLKG-LGADEVFTESQ-----LEVKNVKGFLANLPEPALGFNCVGGNSASMVLKFLSQGGTMVTYGGMSKKPITVSTSSFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKL 717
            R   +E  E L+   GA +V +ESQ        K +   L +     L  N VGG S+S + + L +   M+TYGGMSK+P+T+ TS  IFK L+ KG+W+ +  +    T+  N I   + L ++GK+
Sbjct:  215 RDNFEEVAEVLEQKFGATKVISESQNNDKDFGKKELPKVLGDKARVRLALNSVGGKSSSAIARKLERDALMLTYGGMSKQPVTIPTSLHIFKGLTSKGYWVTE-NNKRDPTDKVNTIKGFIDLYKQGKI 342          
The following BLAST results are available for this feature:
BLAST of CV712464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
ETR1_SCHPO4.143e-1635.93Probable trans-2-enoyl-CoA reductase, mitochondria... [more]
ETR2_CANTR1.021e-1436.72Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s... [more]
ETR1_CANTR2.274e-1435.94Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s... [more]
MECR2_CAEEL2.969e-1434.93Probable trans-2-enoyl-CoA reductase 2, mitochondr... [more]
ETR1_CANGA4.013e-1134.88Probable trans-2-enoyl-CoA reductase, mitochondria... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0001G19_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001G19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712464 ID=CV712464; Name=CV712464; organism=Citrus sinensis; type=EST; length=853bp
TTTTTTTTTTTTTTTTTAGGGCAAGGAGGAATTCCATTCAATGTCCTGAA
AACTTTTCATCTCTCTTTTAGCACGGTAATTACAATAGCATAAAAATCCA
GTACAAAAATGTAAGTTTCATATGTTACAGCACATGGAATGGTCTATAAT
GCAATAAAGACCAAATTAAGTCCTCTCCGTCTCCTTTTCGTAGAGTTCTA
GAGTAATATCTCATATTCCATCTTTTTTGGGTCACACCATAAGTGTTTAG
AACTTGATGACTTGTTTAGGTTGGCTACCGTGTAATCCAAGTGCCTTACT
CAGTGCAGTCTGAAAATTGTTGAAAGGAACCAGCTCCATGTCATATTTTA
ATTTCCCTTCTCGTGCTAGGCACAGAAGATAATCTATCATATTTCTGCAC
TCTGTTGCTTTCTCTGAGCTCAACCATTTTTGCAACCAAAAGCCCTTCAA
GGAAAGATCCTTAAATATGAAGGATGAAGTTGATACAGTGATGGGTTTCT
TTGACATTCCACCATATGTTACCATAGTTCCTCCCTGACTCAAGAATTTG
AGAACCATAGAAGCAGAATTGCCCCCAACACAGTTAAATCCCAAAGCAGG
TTCAGGTAAATTAGCCAGAAAACCCTTGACATTTTTCACTTCCAGCTGGC
TCTCAGTAAATACTTCATCTGCACCAAGTCCTTTAAGCTTTTCCTTAGCT
TCATCTGACCCTGCCCTGGACCAAGCTGAAGAGGGTAATTGAAGGTATAT
AGGCAGGCATCCATTGGATAACAAAACTTCAAGCAATTAAAAAATTCAGT
CAGATAAACCCTTCTTGCCACATTCTAAATTTTTAAAAGTTAAAGCTGTG
TCT
back to top