CV712448

Overview
NameCV712448
Unique NameCV712448
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712448 vs. ExPASy Swiss-Prot
Match: NU6C_AETCO (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Aethionema cordifolium GN=ndhG PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 7.198e-60
Identity = 116/155 (74.84%), Postives = 127/155 (81.94%), Query Frame = -1
Query:  334 GPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 798
            GPIHDF                 LF NPI+SAFSLG VLVCISL YILSNSHFVAAAQLLIYVGA+ VLIIFAVMFMN S+YS D  LN WT+GDG+TS++CT+I FSLI+TILDTSWYG+IWTTR NQI+EQDLISNSQQIGIHLSTDFFLPFE
Sbjct:    5 GPIHDFLLVFLGSGLLFGSLGVVLFPNPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAITVLIIFAVMFMNDSEYSTD--LNRWTVGDGITSVICTTILFSLISTILDTSWYGVIWTTRLNQILEQDLISNSQQIGIHLSTDFFLPFE 157          
BLAST of CV712448 vs. ExPASy Swiss-Prot
Match: NU6C_SOLLC (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Solanum lycopersicum GN=ndhG PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.228e-59
Identity = 116/154 (75.32%), Postives = 127/154 (82.47%), Query Frame = -1
Query:  334 PIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 795
            PIHDF                 L  NPIYSAFSLGLVLVC SLFYILSN++FVAAAQLLIYVGA+NVLIIFAVMFMNGS+Y KDF  +LWT+GDG+TS+VC S+F SLITTI DTSWYGIIWTTR+NQIIEQD +SNSQQIGIHLSTDFFLPFE
Sbjct:    6 PIHDFLLVFLGSGLILGGLGVVLLPNPIYSAFSLGLVLVCTSLFYILSNAYFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKDF--HLWTVGDGITSMVCISLFISLITTISDTSWYGIIWTTRSNQIIEQDFLSNSQQIGIHLSTDFFLPFE 157          
BLAST of CV712448 vs. ExPASy Swiss-Prot
Match: NU6C_OLIPU (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Olimarabidopsis pumila GN=ndhG PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.228e-59
Identity = 116/155 (74.84%), Postives = 127/155 (81.94%), Query Frame = -1
Query:  334 GPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 798
            GPIHDF                 L  NPI+SAFSLG VLVCISL YILSNSHFVAAAQLLIYVGA+NVLIIFAVMFMN S+YS DF  NLWT+G+G+TSLVCT+I F L++TILDTSWYG+IWTTR NQI+EQDLISNSQQIGIHLSTDFFLPFE
Sbjct:    5 GPIHDFLLVFLGSGLLVGGLGVVLLPNPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMNDSEYSTDF--NLWTVGNGITSLVCTTILFLLMSTILDTSWYGVIWTTRLNQILEQDLISNSQQIGIHLSTDFFLPFE 157          
BLAST of CV712448 vs. ExPASy Swiss-Prot
Match: NU6C_PIPCE (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Piper cenocladum GN=ndhG PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.604e-59
Identity = 117/155 (75.48%), Postives = 127/155 (81.94%), Query Frame = -1
Query:  334 GPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 798
            GPIHD                  L TN IYSAFSLG VLVCISLFYILSNS+FVAAAQLLIYVGA+NVLIIFAVMFM GS+YS DF  ++WT+GDG+TSLVCTSIFFSLITTILDTSWYGIIWTTR+NQI+EQDL+SN QQIGIHL TDF LPFE
Sbjct:    5 GPIHDILLVFLGSGIVLGSLGVILLTNTIYSAFSLGFVLVCISLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSNDF--SIWTVGDGVTSLVCTSIFFSLITTILDTSWYGIIWTTRSNQIMEQDLLSNVQQIGIHLVTDFILPFE 157          
BLAST of CV712448 vs. ExPASy Swiss-Prot
Match: NU6C_SOLBU (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Solanum bulbocastanum GN=ndhG PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.094e-59
Identity = 116/154 (75.32%), Postives = 127/154 (82.47%), Query Frame = -1
Query:  334 PIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 795
            PIHDF                 L  NPIYSAFSLGLVLVC SLFYILSNS+FVAAAQLLIYVGA+NVLIIFAVMFMNGS+Y KDF  +LWT+G+G+TS+VC S+F SLITTI DTSWYGIIWTTR+NQIIEQD +SNSQQIGIHLSTDFFLPFE
Sbjct:    6 PIHDFLLVFLGSGLILGGLGVVLLPNPIYSAFSLGLVLVCTSLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKDF--HLWTVGNGITSMVCISLFISLITTISDTSWYGIIWTTRSNQIIEQDFLSNSQQIGIHLSTDFFLPFE 157          
BLAST of CV712448 vs. ExPASy Swiss-Prot
Match: NU6C_NASOF (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Nasturtium officinale GN=ndhG PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.094e-59
Identity = 116/155 (74.84%), Postives = 127/155 (81.94%), Query Frame = -1
Query:  334 GPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 798
            GPIHDF                 L  NPI+SAFSLG VLVCISL YILSNSHFVAAAQLLIYVGA+NVLIIFAVMFMN S+YS D   NLWT+G+G+TSLVCT+I FSL++TILDTSWYG+IWTTR NQI+EQDLISNSQQIGIHLSTDFFLPFE
Sbjct:    5 GPIHDFLLVFLGSGLLVGGLGVVLLPNPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMNDSEYSTDS--NLWTVGNGITSLVCTTILFSLMSTILDTSWYGVIWTTRLNQILEQDLISNSQQIGIHLSTDFFLPFE 157          
BLAST of CV712448 vs. ExPASy Swiss-Prot
Match: NU6C_NANDO (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Nandina domestica GN=ndhG PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.094e-59
Identity = 116/154 (75.32%), Postives = 127/154 (82.47%), Query Frame = -1
Query:  334 PIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 795
            PIHDF                 L TNPIYSAFSLGLVLVCISLF+I +NSHFVAAAQLLIYVGA+NVLI+FAVMFMNGS+Y  DF  +LWT+GDG+TSLVCTSIF SLITTI DTSWYGIIWTTR+NQIIEQDLI+  QQ+GIHLSTDFFLPFE
Sbjct:    6 PIHDFLLVFLGLGLIVGGLGVVLLTNPIYSAFSLGLVLVCISLFHIPANSHFVAAAQLLIYVGAINVLIVFAVMFMNGSEYYNDF--HLWTVGDGVTSLVCTSIFVSLITTISDTSWYGIIWTTRSNQIIEQDLINKGQQLGIHLSTDFFLPFE 157          
BLAST of CV712448 vs. ExPASy Swiss-Prot
Match: NU6C_JASNU (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Jasminum nudiflorum GN=ndhG PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.094e-59
Identity = 116/155 (74.84%), Postives = 126/155 (81.29%), Query Frame = -1
Query:  334 GPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 798
            GPIHDF                    NPIYSAFSLGLVL CISLFYIL NS+FVAAAQLLIYVGA+NVLIIFAVMFMNGS+Y KDF L  WT+GDG+TS+VCTS+F SLITTI DTSWYGIIWTT++NQIIE+DLISNSQQIGIHL TDFFLPFE
Sbjct:    5 GPIHDFLLVFLELGLILGSLGVVFLPNPIYSAFSLGLVLFCISLFYILLNSYFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKDFYL--WTVGDGVTSMVCTSLFISLITTIPDTSWYGIIWTTKSNQIIEKDLISNSQQIGIHLVTDFFLPFE 157          
BLAST of CV712448 vs. ExPASy Swiss-Prot
Match: NU6C_ARATH (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Arabidopsis thaliana GN=ndhG PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.094e-59
Identity = 116/155 (74.84%), Postives = 127/155 (81.94%), Query Frame = -1
Query:  334 GPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 798
            GPIHDF                 L  NPI+SAFSLG VLVCISL YILSNSHFVAAAQLLIYVGA+NVLIIFAVMFMN S+YS DF  NLWTIG+G+TSLVCT+I F L++TILDTSWYG+IWTT+ NQI+EQDLISNSQQIGIHLSTDFFLPFE
Sbjct:    5 GPIHDFLLVFLGSGLLVGGLGVVLLPNPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMNDSEYSTDF--NLWTIGNGITSLVCTTILFLLMSTILDTSWYGVIWTTKLNQILEQDLISNSQQIGIHLSTDFFLPFE 157          
BLAST of CV712448 vs. ExPASy Swiss-Prot
Match: NU6C_PELHO (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Pelargonium hortorum GN=ndhG PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.735e-59
Identity = 114/155 (73.55%), Postives = 128/155 (82.58%), Query Frame = -1
Query:  334 GPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 798
            GPIHDF                 L TNPIYSAFSLG V +CISLFYILSNS+FVAAAQLLIYVGA+NVLI+FAVMFMNGS+Y KDF  +LWT+GDGLTSL+CT +F SLITTILDTSWYGI+WTT++NQIIE+D ISNSQQ+GI LSTDFFLPFE
Sbjct:    5 GPIHDFLLVFLGSGIILGGLGVVLLTNPIYSAFSLGFVFICISLFYILSNSYFVAAAQLLIYVGAINVLILFAVMFMNGSEYYKDF--HLWTLGDGLTSLICTILFLSLITTILDTSWYGILWTTKSNQIIEKDFISNSQQLGILLSTDFFLPFE 157          
The following BLAST results are available for this feature:
BLAST of CV712448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
NU6C_AETCO7.198e-6074.84NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_SOLLC1.228e-5975.32NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_OLIPU1.228e-5974.84NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_PIPCE1.604e-5975.48NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_SOLBU2.094e-5975.32NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_NASOF2.094e-5974.84NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_NANDO2.094e-5975.32NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_JASNU2.094e-5974.84NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_ARATH2.094e-5974.84NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_PELHO2.735e-5973.55NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001G10_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712448 ID=CV712448; Name=CV712448; organism=Citrus sinensis; type=EST; length=798bp
CAACTTCCGTACCAATTTCGATTCATTTCAATCTGAACAATAATAATAAT
GCAAGTGATTTGGTTGCTTAGAATATACCAGGTACGGAACAAAAGAATCC
ATTTGGTAATAGATCGAATAAAAAAAATTCTATTTTGATTTTCTATTGAT
CTGTGAATAGTATTCAACTAGACTTTACAAGAATTTAAGGGAAATGAATG
TGATAACACATAATGAATGTGATAACACATAAAAAGTCGAATTGGGATTG
CTGTTCCTAGTTATAAAGATTTGTTATTGACGCGCCACGGCAATTGCACC
TATTAAAGCAACTAAAAGAATTATTGAAACGAGTTCAAATGGAAGAAAAA
AGTCTGTTGATAAATGAATTCCAATTTGTTGACTATTACTTATCAAATCT
TGTTCAATAATCTGGTTGGCTCGTGTAGTCCAAATAATCCCGTACCACGA
TGTATCGAGAATAGTAGTGATTAGCGAAAAAAAAATACTTGTACAAACCA
GAGAAGTAAGACCATCGCCAATAGTCCAAAGATTCAACTGAAAATCTTTG
GAATAGTCTGAGCCGTTCATGAACATTACAGCAAATATGATTAAAACATT
TACAGCTCCCACGTAAATAAGGAGTTGCGCGGCAGCTACAAAATGGGAAT
TTGATAGAATATAGAATAATGATATACAAACAAGAACCAATCCCAAGGAA
AAGGCAGAATAAATTGGGTTGGTAAATAATACCACTCCCAGACCTCCTAA
TATAAGACCCGATCCCAGAANAACTAAAATAAAATCGTGTATTGGTCC
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