CV712439

Overview
NameCV712439
Unique NameCV712439
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length271
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712439 vs. ExPASy Swiss-Prot
Match: G3P_AMAMU (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Amanita muscaria GN=GPD PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.080e-33
Identity = 66/89 (74.16%), Postives = 76/89 (85.39%), Query Frame = 3
Query:    3 IPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEG 269
            IPWG  G +Y+VES+GVFTT  KASAH+KGGAKK+VISAPSADAPMFV GVN   Y P   +VSNASCTTNCLAPLAKVV+++FGI+EG
Sbjct:   62 IPWGSAGAEYIVESTGVFTTTEKASAHLKGGAKKIVISAPSADAPMFVCGVNLDKYDPKFQVVSNASCTTNCLAPLAKVVNDKFGIVEG 150          
BLAST of CV712439 vs. ExPASy Swiss-Prot
Match: G3P_SORMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Sordaria macrospora GN=GPD PE=3 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 1.411e-33
Identity = 63/89 (70.79%), Postives = 78/89 (87.64%), Query Frame = 3
Query:    3 IPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEG 269
            IPW + G DY+VES+GVFTT  KASAH+KGGAKKV+ISAPSADAPM+V+GVN ++Y  + N++SNASCTTNCLAPLAKV+H+ F I+EG
Sbjct:   84 IPWSETGADYIVESTGVFTTTEKASAHLKGGAKKVIISAPSADAPMYVMGVNNESYDGSANVISNASCTTNCLAPLAKVIHDNFTIVEG 172          
BLAST of CV712439 vs. ExPASy Swiss-Prot
Match: G3P_LACDT (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Lactarius deterrimus GN=GPD PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.411e-33
Identity = 66/89 (74.16%), Postives = 76/89 (85.39%), Query Frame = 3
Query:    3 IPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEG 269
            I WG  G DYVVESSGVFTT+ KASAH+KGGAKKV+ISAPSADAPMFVVGVN   Y     ++SNASCTTNCLAPLAKV++++FGI+EG
Sbjct:   63 IQWGSVGADYVVESSGVFTTVDKASAHLKGGAKKVIISAPSADAPMFVVGVNLDAYDSKYTVISNASCTTNCLAPLAKVINDKFGIVEG 151          
BLAST of CV712439 vs. ExPASy Swiss-Prot
Match: G3P_BRUMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia malayi GN=G3PD PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.411e-33
Identity = 68/90 (75.56%), Postives = 79/90 (87.78%), Query Frame = 3
Query:    3 IPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTY-KPNMNIVSNASCTTNCLAPLAKVVHEEFGILEG 269
            IPWG  G +YVVES+GVFTT  KASAH+KGGAKKV+ISAPSADAPMFV+GVN   Y K N +I+SNASCTTNCLAPLAKV+H++FGI+EG
Sbjct:   89 IPWGVDGAEYVVESTGVFTTTDKASAHLKGGAKKVIISAPSADAPMFVMGVNNDMYDKANNHIISNASCTTNCLAPLAKVIHDKFGIIEG 178          
BLAST of CV712439 vs. ExPASy Swiss-Prot
Match: G3P_BOLED (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Boletus edulis GN=GPD PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.411e-33
Identity = 66/89 (74.16%), Postives = 76/89 (85.39%), Query Frame = 3
Query:    3 IPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEG 269
            IPWG  G  YVVES+GVFTTI KASAH+KGGAKKV+ISAPS+DAPMFV GVN   Y P   ++SNASCTTNCLAPLAKVV+++FGI+EG
Sbjct:   63 IPWGTVGAQYVVESTGVFTTIEKASAHLKGGAKKVIISAPSSDAPMFVCGVNLDAYDPKHTVISNASCTTNCLAPLAKVVNDKFGIVEG 151          
BLAST of CV712439 vs. ExPASy Swiss-Prot
Match: G3PC_ARATH (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Arabidopsis thaliana GN=GAPC PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 1.411e-33
Identity = 67/89 (75.28%), Postives = 78/89 (87.64%), Query Frame = 3
Query:    3 IPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEG 269
            IPW + G DYVVES+GVFT   KA+AH+KGGAKKVVISAPS DAPMFVVGVNE  YK +++IVSNASCTTNCLAPLAKV+++ FGI+EG
Sbjct:   89 IPWAEAGADYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAPLAKVINDRFGIVEG 177          
BLAST of CV712439 vs. ExPASy Swiss-Prot
Match: G3P_PIG (Glyceraldehyde-3-phosphate dehydrogenase OS=Sus scrofa GN=GAPDH PE=1 SV=4)

HSP 1 Score: 140.969 bits (354), Expect = 1.842e-33
Identity = 65/89 (73.03%), Postives = 77/89 (86.52%), Query Frame = 3
Query:    3 IPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEG 269
            I WGD G  YVVES+GVFTT+ KA AH+KGGAK+V+ISAPSADAPMFV+GVN + Y  ++ IVSNASCTTNCLAPLAKV+H+ FGI+EG
Sbjct:   83 IKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEG 171          
BLAST of CV712439 vs. ExPASy Swiss-Prot
Match: G3P_NEUCR (Glyceraldehyde 3-phosphate-dehydrogenase OS=Neurospora crassa GN=gpd-1 PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 1.842e-33
Identity = 63/89 (70.79%), Postives = 78/89 (87.64%), Query Frame = 3
Query:    3 IPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEG 269
            IPW + G DY+VES+GVFTT  KASAH+KGGAKKV+ISAPSADAPM+V+GVN +TY  + +++SNASCTTNCLAPLAKV+H+ F I+EG
Sbjct:   84 IPWSETGADYIVESTGVFTTTEKASAHLKGGAKKVIISAPSADAPMYVMGVNNETYDGSADVISNASCTTNCLAPLAKVIHDNFTIVEG 172          
BLAST of CV712439 vs. ExPASy Swiss-Prot
Match: G3P_TRISI (Glyceraldehyde-3-phosphate dehydrogenase OS=Trionyx sinensis GN=GAPDH PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.406e-33
Identity = 64/89 (71.91%), Postives = 78/89 (87.64%), Query Frame = 3
Query:    3 IPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEG 269
            I WGD G +YVVES+GVFTT  KASAH+KGGAK+VVISAPSADAPMFV+GVN + Y  ++ +VSNASCTTNCLAPLAKV+H+ +G++EG
Sbjct:   83 IKWGDAGAEYVVESTGVFTTTEKASAHLKGGAKRVVISAPSADAPMFVMGVNHEKYDNSLKVVSNASCTTNCLAPLAKVIHDNYGMVEG 171          
BLAST of CV712439 vs. ExPASy Swiss-Prot
Match: G3P_PONAB (Glyceraldehyde-3-phosphate dehydrogenase OS=Pongo abelii GN=GAPDH PE=2 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 2.406e-33
Identity = 64/89 (71.91%), Postives = 78/89 (87.64%), Query Frame = 3
Query:    3 IPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEG 269
            I WGD G +YVVES+GVFTT+ KA AH++GGAK+V+ISAPSADAPMFV+GVN + Y  ++ IVSNASCTTNCLAPLAKV+H+ FGI+EG
Sbjct:   85 IKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEG 173          
The following BLAST results are available for this feature:
BLAST of CV712439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 346
Match NameE-valueIdentityDescription
G3P_AMAMU1.080e-3374.16Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_SORMA1.411e-3370.79Glyceraldehyde-3-phosphate dehydrogenase OS=Sordar... [more]
G3P_LACDT1.411e-3374.16Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_BRUMA1.411e-3375.56Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia... [more]
G3P_BOLED1.411e-3374.16Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3PC_ARATH1.411e-3375.28Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_PIG1.842e-3373.03Glyceraldehyde-3-phosphate dehydrogenase OS=Sus sc... [more]
G3P_NEUCR1.842e-3370.79Glyceraldehyde 3-phosphate-dehydrogenase OS=Neuros... [more]
G3P_TRISI2.406e-3371.91Glyceraldehyde-3-phosphate dehydrogenase OS=Triony... [more]
G3P_PONAB2.406e-3371.91Glyceraldehyde-3-phosphate dehydrogenase OS=Pongo ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001G05_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712439 ID=CV712439; Name=CV712439; organism=Citrus sinensis; type=EST; length=271bp
AGATCCCTTGGGGTGACTATGGGGTTGATTATGTTGTTGAATCTTCTGGA
GTCTTTACAACAATTGCGAAGGCTTCAGCTCACATGAAGGGTGGTGCAAA
AAAGGTGGTAATATCAGCTCCATCAGCTGATGCACCAATGTTTGTGGTAG
GAGTGAATGAAAAGACATACAAGCCAAACATGAACATTGTTTCTAATGCA
AGTTGTACTACCAATTGTCTTGCTCCTCTTGCTAAGGTGGTTCATGAGGA
GTTTGGAATTCTTGAAGGCTT
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