EY660163

Overview
NameEY660163
Unique NameEY660163
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length666
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660163 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.648e-21
Identity = 49/63 (77.78%), Postives = 57/63 (90.48%), Query Frame = 1
Query:   61 LVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNF 249
            L+NS +  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLA+ YL EAALG+ANADAI +GNF
Sbjct:  377 LLNSFDGPPTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTGNF 439          
BLAST of EY660163 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.152e-21
Identity = 47/67 (70.15%), Postives = 61/67 (91.04%), Query Frame = 1
Query:   55 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG 255
            K LVNS++   TFEQP+MT+EKLLEYG+M+VQEQ+NVKRVQLAD Y+S+AALG+AN DA+++G+FYG
Sbjct:  361 KRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 427          
BLAST of EY660163 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.671e-21
Identity = 48/66 (72.73%), Postives = 59/66 (89.39%), Query Frame = 1
Query:   55 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFY 252
            K LVNSKE  PTF+QP+MT++KLL Y +M+VQEQENVKRVQLAD+YL+EAALG AN DAI+SG+F+
Sbjct:  375 KKLVNSKEGPPTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQYLNEAALGNANEDAIKSGSFF 440          
BLAST of EY660163 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.262e-21
Identity = 47/63 (74.60%), Postives = 57/63 (90.48%), Query Frame = 1
Query:   55 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSG 243
            + L+NS++  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLA+ YL EAALG+ANADAI +G
Sbjct:  370 EKLLNSRDGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTG 432          
BLAST of EY660163 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.313e-12
Identity = 32/42 (76.19%), Postives = 40/42 (95.24%), Query Frame = 1
Query:   55 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQL 180
            ++LVNSKE+ PTF+QP+MT+EKLLEYGNM+V EQENVKRV+L
Sbjct:  368 RNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKL 409          
The following BLAST results are available for this feature:
BLAST of EY660163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RCA2_TOBAC1.648e-2177.78Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU2.152e-2170.15Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU3.671e-2172.73Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN6.262e-2174.60Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA5.313e-1276.19Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-019-C02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660163 ID=EY660163; Name=EY660163; organism=Citrus sinensis; type=EST; length=666bp
CCACGCGTCCGGTGAGGAATTGTGATCTCTGGTATTGGTGTTGGAAGCAT
TGGCAAGAGCCTTGTGAACTCAAAGGAAGCAGCCCCAACATTCGAGCAAC
CAAGGATGACAATGGAGAAGCTGCTCGAGTACGGAAACATGATTGTGCAA
GAGCAAGAGAATGTGAAGAGAGTTCAGTTGGCTGACAAGTATTTGAGTGA
GGCCGCTCTTGGTGAAGCTAATGCAGATGCTATTCAGAGTGGAAATTTCT
ATGGTTAGCCCCCTTGATCCTAGCTAAGAGGCCTTGATGGGAGGTTTGCT
ACTAGCATTCTAGAAAATTTAGAGCATAAATTGAGATCAAATGAAGAATA
TAACAAAGCATTTTTTTTTTTTTTTGGGTAAATTTTGTTGTTGCAGGCAA
AGCAGCCCAGCAAATGAATGTTCCAGTTCCTGAAGGATGTACTGATCCTA
CTGCAGAAAACTTTGATCCAACTGCAAGAAGTGATGATGGAAGCTGCCAA
TACACGCTTTAGGCCTTGTTTCTAAGGGTTGAGAAGTGTCGCACTTTGCT
TAAGATGTGAGATATTCAAATAATATTGGTGCATTTTCATTTCTTTGGTA
ATTAGAAGAATCCTCTAATTTTGTGTTATATCACAACTCTTTATTCGATC
CTTAAAAAAAAAAAAA
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