CV712379

Overview
NameCV712379
Unique NameCV712379
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length359
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV712379 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPAL (Ubiquitin OS=Lupinus albus PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.726e-23
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 2 
Query:    2 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 160
            ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV
Sbjct:   18 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
[Close]
BLAST of CV712379 vs. ExPASy Swiss-Prot
Match: UBIQ_LINUS (Ubiquitin OS=Linum usitatissimum PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.726e-23
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 2 
Query:    2 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 160
            ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV
Sbjct:   18 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
[Close]
BLAST of CV712379 vs. ExPASy Swiss-Prot
Match: UBIQ_HORVU (Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.726e-23
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 2 
Query:    2 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 160
            ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV
Sbjct:   18 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
[Close]
BLAST of CV712379 vs. ExPASy Swiss-Prot
Match: UBIQ_HELAN (Ubiquitin OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.726e-23
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 2 
Query:    2 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 160
            ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV
Sbjct:   18 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
[Close]
BLAST of CV712379 vs. ExPASy Swiss-Prot
Match: UBIQ_DESAN (Ubiquitin OS=Deschampsia antarctica PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.726e-23
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 2 
Query:    2 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 160
            ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV
Sbjct:   18 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
[Close]
BLAST of CV712379 vs. ExPASy Swiss-Prot
Match: UBIQ_DAUCA (Ubiquitin OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.726e-23
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 2 
Query:    2 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 160
            ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV
Sbjct:   18 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
[Close]
BLAST of CV712379 vs. ExPASy Swiss-Prot
Match: UBIQ_BRARA (Ubiquitin OS=Brassica rapa PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.726e-23
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 2 
Query:    2 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 160
            ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV
Sbjct:   18 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
[Close]
BLAST of CV712379 vs. ExPASy Swiss-Prot
Match: UBIQ_AVESA (Ubiquitin OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.726e-23
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 2 
Query:    2 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 160
            ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV
Sbjct:   18 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
[Close]
BLAST of CV712379 vs. ExPASy Swiss-Prot
Match: UBIQ_AVEFA (Ubiquitin OS=Avena fatua PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.726e-23
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 2 
Query:    2 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 160
            ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV
Sbjct:   18 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
[Close]
BLAST of CV712379 vs. ExPASy Swiss-Prot
Match: UBIQ_ASPOF (Ubiquitin OS=Asparagus officinalis PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.726e-23
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 2 
Query:    2 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 160
            ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV
Sbjct:   18 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
The following BLAST results are available for this feature:
BLAST of CV712379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
UBIQ_LUPAL1.726e-23100.00Ubiquitin OS=Lupinus albus PE=3 SV=1[more]
UBIQ_LINUS1.726e-23100.00Ubiquitin OS=Linum usitatissimum PE=3 SV=1[more]
UBIQ_HORVU1.726e-23100.00Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1[more]
UBIQ_HELAN1.726e-23100.00Ubiquitin OS=Helianthus annuus PE=3 SV=1[more]
UBIQ_DESAN1.726e-23100.00Ubiquitin OS=Deschampsia antarctica PE=2 SV=1[more]
UBIQ_DAUCA1.726e-23100.00Ubiquitin OS=Daucus carota PE=3 SV=1[more]
UBIQ_BRARA1.726e-23100.00Ubiquitin OS=Brassica rapa PE=3 SV=1[more]
UBIQ_AVESA1.726e-23100.00Ubiquitin OS=Avena sativa PE=1 SV=1[more]
UBIQ_AVEFA1.726e-23100.00Ubiquitin OS=Avena fatua PE=3 SV=1[more]
UBIQ_ASPOF1.726e-23100.00Ubiquitin OS=Asparagus officinalis PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001E21_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001E21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712379 ID=CV712379; Name=CV712379; organism=Citrus sinensis; type=EST; length=359bp
AGAGAGTTCTGATACCATTGACAATGTCAAAGCCAAGATTCAGGACAAGG
AAGGGATCCCACCTGATCAGCAGAGGCTCATCTTCGCTGGGAAGCAGCTT
GAGGACGGGCGTACTCTGGCTGATTACAACATTCAGAAGGAGTCCACCCT
CCATCTCGTCCTCCGTCTCCGAGGTGGTGGTTTCTGAGGGGGATTCACTG
CGCCCCGTGTCAATGTCTTTTCTGTTCAAGATGGTCCTTATGTTGTCTTT
GTCTTCTTGAAGAAGACTAGTTATAATTGATAATATGGTCTTTTGTTTTT
ATATGTTGTTGTTTGTTGAACGAGTTATGCTTTTGAATAAAAAACTCTAG
TTTAAATAA
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