CV712379

Overview
NameCV712379
Unique NameCV712379
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length359
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712379 vs. ExPASy Swiss-Prot
Match: UBIQ_DICDI (Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.237e-21
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 2
Query:    2 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 160
            E SD I+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct:   18 EGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70          
BLAST of CV712379 vs. ExPASy Swiss-Prot
Match: UBIQ_PHYIN (Ubiquitin OS=Phytophthora infestans PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.616e-21
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 2
Query:    2 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 160
            E SD+IDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct:   18 EPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70          
BLAST of CV712379 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.018e-21
Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = 2
Query:    2 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 160
            E SDTI+NVKAKIQDKEGIPPDQQRLIFA KQLE+GRTL+DYNIQKESTLHLV
Sbjct:   18 EPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLV 70          
BLAST of CV712379 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.198e-16
Identity = 40/53 (75.47%), Postives = 45/53 (84.91%), Query Frame = 2
Query:    2 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 160
            E  DT+  VK KI DKEG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+V
Sbjct:   18 EPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMV 70          
BLAST of CV712379 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 3.486e-16
Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = 2
Query:    2 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 160
            E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+V
Sbjct:   18 EPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMV 70          
BLAST of CV712379 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.711e-13
Identity = 34/53 (64.15%), Postives = 42/53 (79.25%), Query Frame = 2
Query:    2 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 160
            E +DTID VK ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLV
Sbjct:   18 EPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLV 70          
BLAST of CV712379 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.153e-13
Identity = 33/53 (62.26%), Postives = 42/53 (79.25%), Query Frame = 2
Query:    2 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 160
            E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLV
Sbjct:   18 EPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLV 70          
BLAST of CV712379 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.153e-13
Identity = 33/53 (62.26%), Postives = 42/53 (79.25%), Query Frame = 2
Query:    2 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 160
            E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLV
Sbjct:   18 EPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLV 70          
BLAST of CV712379 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.153e-13
Identity = 33/53 (62.26%), Postives = 42/53 (79.25%), Query Frame = 2
Query:    2 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 160
            E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLV
Sbjct:   18 EPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLV 70          
BLAST of CV712379 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.790e-12
Identity = 30/53 (56.60%), Postives = 41/53 (77.36%), Query Frame = 2
Query:    2 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 160
            E +D +D +K ++++KEGIPP QQRLIF+GKQ+ D +T ADY +Q  S LHLV
Sbjct:   18 EPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLV 70          
The following BLAST results are available for this feature:
BLAST of CV712379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
UBIQ_DICDI1.237e-2192.45Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1... [more]
UBIQ_PHYIN1.616e-2192.45Ubiquitin OS=Phytophthora infestans PE=1 SV=1[more]
UBIQ_LEITA8.018e-2190.57Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3... [more]
UBIL_NPVOP1.198e-1675.47Ubiquitin-like protein OS=Orgyia pseudotsugata mul... [more]
UBIL_NPVAC3.486e-1671.70Ubiquitin-like protein OS=Autographa californica n... [more]
RUB1_DESAN4.711e-1364.15NEDD8-like protein RUB1 OS=Deschampsia antarctica ... [more]
RUB2_ORYSJ6.153e-1362.26NEDD8-like protein RUB2 OS=Oryza sativa subsp. jap... [more]
RUB1_ORYSJ6.153e-1362.26NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap... [more]
RUB1_ARATH6.153e-1362.26NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN... [more]
NEDD8_DROME1.790e-1256.60NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001E21_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001E21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712379 ID=CV712379; Name=CV712379; organism=Citrus sinensis; type=EST; length=359bp
AGAGAGTTCTGATACCATTGACAATGTCAAAGCCAAGATTCAGGACAAGG
AAGGGATCCCACCTGATCAGCAGAGGCTCATCTTCGCTGGGAAGCAGCTT
GAGGACGGGCGTACTCTGGCTGATTACAACATTCAGAAGGAGTCCACCCT
CCATCTCGTCCTCCGTCTCCGAGGTGGTGGTTTCTGAGGGGGATTCACTG
CGCCCCGTGTCAATGTCTTTTCTGTTCAAGATGGTCCTTATGTTGTCTTT
GTCTTCTTGAAGAAGACTAGTTATAATTGATAATATGGTCTTTTGTTTTT
ATATGTTGTTGTTTGTTGAACGAGTTATGCTTTTGAATAAAAAACTCTAG
TTTAAATAA
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