CV712379 | Citrus Genome Database

Overview


Name	CV712379
Unique Name	CV712379
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	359

Libraries


Library Name	Type
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CV712379 vs. ExPASy Swiss-Prot
Match: RUB2_ARATH (NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN=RUB2 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.209e-12
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 2

Query:    2 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 160
            E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DY I+  S LHLV
Sbjct:   18 EPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYAIEGGSVLHLV 70

[Close]

BLAST of CV712379 vs. ExPASy Swiss-Prot
Match: NEDD8_CAEEL (NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.885e-12
Identity = 30/53 (56.60%), Postives = 40/53 (75.47%), Query Frame = 2

Query:    2 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 160
            E +D ++ +K K+++KEGIPP QQRLIFAGKQ+ D +T ADY +   S LHLV
Sbjct:   18 EPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGSVLHLV 70

[Close]

BLAST of CV712379 vs. ExPASy Swiss-Prot
Match: RUB3_ORYSJ (NEDD8-like protein RUB3 OS=Oryza sativa subsp. japonica GN=RUB3 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.585e-11
Identity = 29/53 (54.72%), Postives = 40/53 (75.47%), Query Frame = 2

Query:    2 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 160
            E +DT+D +K +++++EGIPP QQRLI+ GKQL D +T  DY I+  S LHLV
Sbjct:   18 EMTDTVDRIKERVEEREGIPPVQQRLIYGGKQLADDKTAHDYKIEAGSVLHLV 70

[Close]

BLAST of CV712379 vs. ExPASy Swiss-Prot
Match: NEDD8_RAT (NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.522e-11
Identity = 28/53 (52.83%), Postives = 40/53 (75.47%), Query Frame = 2

Query:    2 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 160
            E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLV
Sbjct:   18 EPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLV 70

[Close]

BLAST of CV712379 vs. ExPASy Swiss-Prot
Match: NEDD8_RABIT (NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.522e-11
Identity = 28/53 (52.83%), Postives = 40/53 (75.47%), Query Frame = 2

Query:    2 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 160
            E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLV
Sbjct:   18 EPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLV 70

[Close]

BLAST of CV712379 vs. ExPASy Swiss-Prot
Match: NEDD8_MOUSE (NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.522e-11
Identity = 28/53 (52.83%), Postives = 40/53 (75.47%), Query Frame = 2

Query:    2 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 160
            E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLV
Sbjct:   18 EPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLV 70

[Close]

BLAST of CV712379 vs. ExPASy Swiss-Prot
Match: NEDD8_HUMAN (NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.522e-11
Identity = 28/53 (52.83%), Postives = 40/53 (75.47%), Query Frame = 2

Query:    2 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 160
            E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLV
Sbjct:   18 EPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLV 70

[Close]

BLAST of CV712379 vs. ExPASy Swiss-Prot
Match: NEDD8_BOVIN (NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.522e-11
Identity = 28/53 (52.83%), Postives = 40/53 (75.47%), Query Frame = 2

Query:    2 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 160
            E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLV
Sbjct:   18 EPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLV 70

The following BLAST results are available for this feature:

BLAST of CV712379 vs. ExPASy Swiss-Prot

BLAST of CV712379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88


Match Name	E-value	Identity	Description
RUB2_ARATH	5.209e-12	60.38	NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN...	[more]
NEDD8_CAEEL	8.885e-12	56.60	NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1	[more]
RUB3_ORYSJ	2.585e-11	54.72	NEDD8-like protein RUB3 OS=Oryza sativa subsp. jap...	[more]
NEDD8_RAT	7.522e-11	52.83	NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1	[more]
NEDD8_RABIT	7.522e-11	52.83	NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1	[more]
NEDD8_MOUSE	7.522e-11	52.83	NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2	[more]
NEDD8_HUMAN	7.522e-11	52.83	NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1	[more]
NEDD8_BOVIN	7.522e-11	52.83	NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS08_0001E21_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001E21, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CV712379 ID=CV712379; Name=CV712379; organism=Citrus sinensis; type=EST; length=359bp
AGAGAGTTCTGATACCATTGACAATGTCAAAGCCAAGATTCAGGACAAGG
AAGGGATCCCACCTGATCAGCAGAGGCTCATCTTCGCTGGGAAGCAGCTT
GAGGACGGGCGTACTCTGGCTGATTACAACATTCAGAAGGAGTCCACCCT
CCATCTCGTCCTCCGTCTCCGAGGTGGTGGTTTCTGAGGGGGATTCACTG
CGCCCCGTGTCAATGTCTTTTCTGTTCAAGATGGTCCTTATGTTGTCTTT
GTCTTCTTGAAGAAGACTAGTTATAATTGATAATATGGTCTTTTGTTTTT
ATATGTTGTTGTTTGTTGAACGAGTTATGCTTTTGAATAAAAAACTCTAG
TTTAAATAA